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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006608 ID=TCONS_00006608|Name=TCONS_00006608|organism=Clytia hemisphaerica|type=transcript|length=796bp
TATAAGAGTACAGAGTTGATACCATAGGCCTGGCtttcattgcattaatt
ttGATGTGAAAATCTTGTTTCGTTGAATAATGAAGAAAATGATGGATGTA
CCACCACCATACGTAATTGTTGGAAAAACTGACGAAGAAGATAAAAATTG
TGAAGAACAAAAAATCCAACACCTTACATtgtgttcaaaaataaagatta
tCTTTTTCGTTCAACTTCCATTTTTATTGGGGTTAACACCCTCTTTCTAA
TGTTGAATTGGTCGATTTTGGTTGTTTTACGCTGGGCCGGTGATCGTAAT
TATTATTATAGTGATTTAACACCAATCGATGGTGAAGCAGCCATTACTAT
GCTTGGTAATATTACCCTGTGGATGTTCAACATTGTATTTATCTTCATGA
ACATTACTGAAATCGCCAACAGATTAAGAGGAGGAGATGTTAATATCCAC
AAAATTATGATGGTGATATGTTGTGTTTGCAGTCTTCCCATCTTCATTGC
AAGTGTTATGGGAATGAATTACCTTAGCAAGCCGCATTTTGATCGGTATG
AAGTGGGAAGGTGGAGTCGCGTGgtactttcttcttttttttattccttG
ATGAAATAAAAACTCGTATCAACTACACTAAGAATTCAAACAAAAAAACT
GTGAAAGTATTGCGTGTTTGTATCTTAAAGTTTTCAATCTTTCAATTCTT
TATTCTAAATGATGATTCAGTGAGGTAaccataccttatcggggaaaaaa
tgtcgggtgAACGTTACGAAAATATTGAGggttgacgaaattttcc Run BLAST on NCBI transcript from alignment at sc0000069:101598..105809- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006608 ID=TCONS_00006608|Name=TCONS_00006608|organism=Clytia hemisphaerica|type=transcript|length=4212bp|location=Sequence derived from alignment at sc0000069:101598..105809- (Clytia hemisphaerica)
TATAAGAGTACAGAGTTGATACCATAGGCCTGGCTTTCATTGCATTAATT
TTGATGTGAAAATCTTGTTTCGTTGAATAATGAAGAAAATGATGGATGTA
CCACCACCATACGTAATTGTTGGAAAAACTGACGAAGAAGATAAAAATTG
TGAAGAACAAAAAATCCAACACCTTACATTGTGTTCAAAAATAAAGATTA
TCTTTTTCGTTCAACTTCCATTTTTATTGGGGTTAACACCGTAAGTTCTC
GTTCTTTAAAGTTTTCAATTCAAAGTTGGATGGATATCCAGTAGCCGATG
AAAATCCGACGCTGCTGTTTAACTTAAGGCACATAGTTCNCTTTAAAGTT
TTCAATTCAAAGTTGGATGGATATCCAGTAGCCGATGAAAATCCGACGCT
GCTGTTTAACTTAAGGCACATAGTTCGGGGGAAGGTATTAACCTTAGGGT
TATACTACCCTTGCCGACCGACGGGGGTGCTCTGCTGAGGTTCAGAAAAT
GGACCCTACGTGGGGCTCGTTTTTTCAAAAATTTTGCCGAAATTTGCGAA
AAAAGTGACCCTGAATGGGACGGAAATTCCAAAATTTTCTACTTTTTCCA
AAAAAGGCACCCTACGAGGGACTGATTTTTCTATTTTGGCGTTTCTGCGA
CCCTAACTGGGACTCGTGGAGGTTAAAAAAGGTACCATGACCAGCGGCGC
ATCCCCGTAACCCATTTTGCCCTAGTACCCCCCCCCGGAGTATTGAAAGT
CACATGATACAATAAATAACCTCATGCACCAAATAAAGTAGTTTACGCAA
TAGATATCACACGGTACCGGCGAGTATCCCATATTGTACGAGTCTTGACG
AGTAAAATTGTGATAACTGCCCGGGGGGAGGGGGGACTTTGGGAAAAAAG
GGGGGGGGGGGGGGACTTAGGCAAAAATGGATGATGGGTATGTGCGGACG
GTAAGGGTCGGTTTTTTCACCTTTCAAAGTCTCTCTAAGGGTTGGGAAAA
TCAGAAAATTTTAAATTAGTCTCTCTAAGGGTCGGAAAATTCAGGATTTT
TAAGAAATTTTTTGATTTCCAGAGAAAAAATTGTAATAAAGTCTCTCTAA
GGGTATGACTTTTTTCAAAAATCGAAAAAAATAATTCAAAAAGTCTCTGT
AAGGGTCACCTTTTCAGCAAAAATCAGTCTCTCTAAGGGTCGGTTTTCGG
AGGTCCCGTCCGCACATACCCCTCATTCGCCAACCCTAACACCCCGGTGA
TAACTGGTTTATCGTCAACTTGTAAATATCACTAACTTTTCTCTCTCCAT
TTGTGTCGTTTTCTATGTTTTGTTTTGCTGTTGTGATTTTCTCTCTCCTC
TATTTTAATAAAAACAACATTAAAAAATTCGAAAAAATCGAACAGTCATT
AAATCATGGATCAAGTTTGAATCAAGTGTACAAAATATGATATCTCGCTT
ACCAGACCCCTTTTTGAACGCAGTCTTGTATTTGTACGGTACAATATGAA
ATCATTATGTACGCGTTTTTAGCCAATCAGATTGCTCATATTTTTCATGT
TGACGATAAATGCAATAAAACAATTTTGTTGCATGGGTTTATCAAGGCTA
CATTACAAGGTTACATTCAGTGCATAACTTTTGATATGAGAATAAGTCGA
AGAAGTAGTTTTTGGATGCTTATGCATCGGTTTATCTACCGGGTGTTTTG
GTTCTCATCAACAAAATTTGTGAATCTTCAATACGCTAAGGTAATCCATT
TTTCTTTTTACCAGCTCTTTCTAATGTTGAATTGGTCGATTTTGGTTGTT
TTACGCTGGGCCGGTGATCGTAATTATTATTATAGTGATTTAACACCAAT
CGATGGTGAAGCAGCCATTACTATGCTTGGTAATATTACCCTGTGGATGT
TCAACATTGTATTTATCTTCATGAACATTACTGAAATCGCCAACAGATTA
AGAGGAGGAGATGTTAATATCCACAAAATTGTGAGTATTTATGATATGCA
CCACTGCAATGACTTCACAAAATTATGCAAAAAACTTTTCTGTTTTTTCC
CCCCCCCAATACGTCACTTTTTCTATTGTTTAAGTGACGTATTGGGTGGA
AAATTCTAAAAGTTCTCAGAAGACTCTCCAGTGGTGCATATCATAAATAG
TGCTGTCTCAATCTCAATATAATCTGCAGGGGAGACACAAACATTTGATA
GAATTCGAATAAGATAGCGGTTTTGTGCTTTTTGAAAAGATATTCGGGAG
CGGAAAATTATCCGAAAAGAAAAAATGAAGAGACAGGTATTAAGATAGAA
CTTAGAAAACTGTCACAGCTATTATAACATCATTCCAAATGCGAGTTTCC
AATATAAATTTTGAGAAATACTTAAAACAACATCTTGGTATAAGTCACTC
CTTAGTTGGCTACCACTTGTTGGCTTAGCTATAACGCTAGCAGGTTGTGA
GGGTGTTTTGGCTGTTAACCGTTGAAAAGCATCTCTAAATATTGTTTTTT
AAAAAGCAGTTCAAATCAACTATTACCGACTACTGTAGCTGAGCACCTGT
TTGGTAAACTTAAGACTTTTTAGCAGCCGTAGCATGAAGGTAGAGCATCC
AGCTACGGTGCGCAATTTTGTGGGTTTAATCCCCAGCCGGGTCATACCAA
AGCTTCCCAAAATGGTACTTGATGCCTCTCTGCTTGATGCCTCTCTGCTT
GATGCTCAGTAACTAAAGAGACGGATCAAGGGTAAGTGGAGAAATCCAGA
GAAAGGAGTGGCGCCTCCCCTACCTTCGGGTAGACAGCTATACGAAAAGG
GAGCCTTCGGGTCGCCCTCGAATGCGGTCGCAAACTTACTTACTTACTAA
GACTTTTTAAGGGCTTATCACCAAAGAACAAAGAGACTTTTCTCTATTCT
TTACAAGAAACAATTTGCAAGTGTTTTTATTTTTCATTCATTATAGATGA
TGGTGATATGTTGTGTTTGCAGTCTTCCCATCTTCATTGCAAGTGTTATG
GGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCAGCGGAGCTTTTT
TGAAGGGGCGCCGAAGAGCAAGGGGCGCCAAAAGAAATGTTTTTAAAAGC
CGCAATCTTAAAAATCATACTTTATGCGCCTTAAATTGCGCCCCGGACCA
ACTTTACTGAGATAATTTTAGAATACTTGCAATTTTTTTCGCTCGCTTCG
CTCGCAATGTAGTTTAATTGGTAACTTCTTTGCAATCTAGCTAATTTATA
AGTTTTTTTGTGTACAATATAGCATTATTAAATGAAAATCTAACTGCACC
CCAAGACCAATTTGTTGACAACAATATTGAAATCATAGAACATCAATTTT
TTCGCTCGCTTCCCTCGCATTTCACATTGTTTCTTTAAGTCTCTTTTCAC
TCTAGCAAGTGTCAAATTTGTCTATTTTTATTTACTGATTTAGGGTGTCT
TGACAGTCAATTTTTAAAATTTTTTCTAGTCGGCCCCAACCATGGTGGGG
CCTGCTTTTCCATTCATCAAAGATATATCTACTCTTCTCCACTAAATATT
TCCTTCCTCGTTATGTCTAGGCAAATGAATTAGTAAAGGTTAGAAACTGG
TTAGTGGGGGCACCACTTTGGAAAATTGAAGGGGGCGCCATTTAAAAAAA
ATTGACTTTGGCCCCTCCAGAAAAATTTTCCCACAACGCCACTGNAGTGT
TTTTATTTTTCATTCATTATAGATGATGGTGATATGTTGTGTTTGCAGTC
TTCCCATCTTCATTGCAAGTGTTATGGGAATGAATTACCTTAGCAAGCCG
CATTTTGATCGGTATGAAGTGGGAAGGTGGAGTCGCGTGGTACTTTCTTC
TTTTTTTTATTCCTTGATGAAATAAAAACTCGTATCAACTACACTAAGAA
TTCAAACAAAAAAACTGTGAAAGTATTGCGTGTTTGTATCTTAAAGTTTT
CAATCTTTCAATTCTTTATTCTAAATGATGATTCAGTGAGGTAACCATAC
CTTATCGGGGAAAAAATGTCGGGTGAACGTTACGAAAATATTGAGGGTTG
ACGAAATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006608-exon-sc0000069-1575043694:105570..105809 | TCONS_00006608-exon-sc0000069-1575043694:105570..105809 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1575043694:103830..104045 | TCONS_00006608-exon-sc0000069-1575043694:103830..104045 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1575043694:101598..101937 | TCONS_00006608-exon-sc0000069-1575043694:101598..101937 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1510915933:105570..105809 | TCONS_00006608-exon-sc0000069-1510915933:105570..105809 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1510915933:103830..104045 | TCONS_00006608-exon-sc0000069-1510915933:103830..104045 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1510915933:101598..101937 | TCONS_00006608-exon-sc0000069-1510915933:101598..101937 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1491911889:105570..105809 | TCONS_00006608-exon-sc0000069-1491911889:105570..105809 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1491911889:103830..104045 | TCONS_00006608-exon-sc0000069-1491911889:103830..104045 | Clytia hemisphaerica | exon |
| TCONS_00006608-exon-sc0000069-1491911889:101598..101937 | TCONS_00006608-exon-sc0000069-1491911889:101598..101937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:101598..105809 - |
Blast
The following BLAST results are available for this feature:
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