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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006605 ID=TCONS_00006605|Name=TCONS_00006605|organism=Clytia hemisphaerica|type=transcript|length=1799bp
ACCTCCACGATTAGattcaaatttcaatcaaaGTTAATTTCGCTACACTA
AGAGAAAAGTAGCCTCTAAGATTGGCACCTTGAAACTTTGGCTCAATTTC
AAGATCAGAGCACACATCATCAAAATTAtgagaatttttcttcattcatt
TTTCATATTATCAATATTCTTCCAACACGTCTACAATTTCATCGACAATT
TACAGACTGAAGATTGGCATGGACAATATGGTAAAACTTTTCCCGGACAC
ATTCGAGGTCCACGAAAACTTTCGGACAGGATCGGTATCGTCGGAGCAGG
ACCCAGTGGTATCCATATGGCTTATTTGTTGAAACAAAGAGGATTCAAGA
ATATTCAAATATTGGAAGCTTCAAATAGGATAGGTGGCAAATCAAGGACA
ATCAACTATCGGGGAGCAAACCATGAAATGGGAACCTGCTATTTATCTGC
AGACTATGAGCACAATATTCTCCGCCTCGTCAATCAATTTACCCAGAGCG
CCACTAAACCTCCGCCCATTGCTAGTGTTTGGTCACGCCTTACACCCAAC
AGTAGCGTCACTTTCAATCATTACTACTCTATGgtcttgaaaatgaaata
cccGAACTTGAATATGATGGAGATACAAGGCTTATTTTTACGTAAGCTGA
AGACATATGTTTATCTCCACAAGACAATGTTCGGAGATTACTACGGAGAA
ATCATGCCGCAACCGTCGCCTCAAATTATGGAGAAAATCAAAGGGacgtt
tttggattttttggaGCGAAACGGTCTTGCTGATCTGGAGGAAATGTTTA
CAGCATCTCACACATTGCAAGGATACGGAAGAATCTCGGAAATTCCGGCA
CTTTACGGGTTGATGTGGAACACACCTAAAGTGATCGGAAGTTTGGTCGA
GCTGGTCAAAGGAAAGGCCGGAGcaATTTACATGCTAGAGGATGGTTTCG
AAAATCTGTGGCGAACTattgcagaaaaaaatcaccTCAATGTAATGTTT
AAATCGAAAGTACGGCATGTCATGTTGTCTGGTCGCCATGGAAACGAAAA
AGCTTACATTTACTACATCAACAATGGAAGATTACGGTACCGAAAATTTG
ATTTCCTTATATGGACACCCCCTGTCAACACCCTTATGCGCATTCTCAGT
GGAGTTGGTTTGCAAGAAGAACGAAAGTTGTTCCGAGGTATGACAAATAG
TTATTACGCAACATCACTCGTTGATGACGTAGGCGGAAGGCGGGGCCAAA
GCTCAGTCAATTGGTGGATGGAGAATATCAAGGGcggaaaagatttttca
gtTTGGGCGAATCGAGATGCGTACACCATGTTTCATGACCTGAACGGGAT
GAGATATAGTCAACAACAAACGGTAACCGGAAGCGACAACCAAACAGAAA
TCCGGACTTCCGTTTTCTATCAGTACTCTCATAACAAACCACGGAAAGAT
CATTTAGCCTCAGTTTTAAAgcgacatttaaaaaaaatggggGCTAGTTC
CGTGGAAATCATCAAACAGTACCCGTGGAAGTATTTCACTCGTTTCACGG
AACCTCAACTTTTGTCAGGTGCTATTTGGAAAGTGTTGGAGTTACAAGGG
AAACGAAACATGTGGTTTGTTGGTGCTTCGGTCTCATTCGAGTCAGTCAA
AAGCGTGGTTGAGTATAACCAATTGTTAGTAGACCGAATGACTGAACCCA
ATAATTGAATATTCTGCAGTGCAATATTTTTCTCTAAACAAGACATTTAG
TATTTTACTGTAAAGTACTCATGTCAAAGGATGAAAAACGAATGCGGCT Run BLAST on NCBI transcript from alignment at sc0000069:737648..741744+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006605 ID=TCONS_00006605|Name=TCONS_00006605|organism=Clytia hemisphaerica|type=transcript|length=4097bp|location=Sequence derived from alignment at sc0000069:737648..741744+ (Clytia hemisphaerica)
ACCTCCACGATTAGattcaaatttcaatcaaaGTTAATTTCGCTACACTA
AGAGAAAAGTAGCCTCTAAGATTGGCACCTTGAAACTTTGGCTCAATTTC
AAGATCAGAGCACACATCATCAAAATTAtgagaatttttcttcattcatt
TTTCATATTATCAATATTCTTCCAACACGTCTACAATTTCATCGACAATT
TACAGACTGAAGATTGGCATGGACAATATGGTAAAACTTTTCCCGGACAC
ATTCGAGGTCCACGAAAACTTTCGGACAGGATCGGTATCGTCGGAGCAGG
ACCCAGTGGTATCCATATGGCTTATTTGTTGAAACAAAGAGGATTCAAGA
ATATTCAAATATTGGAAGCTTCAAATAGGATAGGTAAAAGAGTGTTTCAT
ATTGATCTTCTTTAAAACTCTACTATATTTTACGAAGgttgttttcaaat
ttcattcaatctcgtacccagagccacttgcagcactttttttgtttttc
tgatacacccccttctcacagacccactgggacccctcccactgaaaaaa
ttggccaaaatatcgtccccagtagaaaatgatcctccaatttttctccc
cacttaaaataatcaaataaaccaacccTCGTTGCAAAAATTTATGCTAT
TTTTTCAATCCCACTGAATTCTTTGACCCTATGGTATGAATTTTCCTCTT
CGGGttttaaaacactttttccTGTCTATGTTATTAAAGGAAAATTAAAG
GATCCTCAAAATGGTGGCACTGAATTCTATACACTGAAACTACATATATC
ATATTTCTTACAGAGTAGTTAGAAGTCAGAAATAAAACCTACCTAAACCA
GAGAAAACCTTTAAACACCAAGAAAATGATTTCTCCAGTGAACCTTTTAG
TGGCGTTCGATCGCATCCAGTTCTTTCCAACTACAATCCTGGACAGAACT
GTTTgtccaccccctccccccccaaTATCAGTGTTGATGTTGAGTCTTGT
GAAGgtgcaaaaattcaactccaacattgatTTTGGGGGGAGAGGGGGGA
CTTGTCGGTGGAAAAGAGTTATTGGACATCAGTTTTGACCACGATTGTAG
AATCTAGCTGCTAAAGAAAATCAATAAATCGAAAAGTCAACCTTTTGATT
GCCAACAATACCGTGTGTTATATAAAATACTACAATACTGGTTGAGTATT
TCTGCTGAAAAATTCCAGCAACTGAGTAATCTATCAACAATAAGGGGAAA
CTTGTTTAAAGTTGTACTAAATCAAAATTATCAATACATTATGCACGGTA
TTGTATTTCACTTACATTTTTTTCAGGTGGCAAATCAAGGACAATCAACT
ATCGGGGAGCAAACCATGAAATGGGAACCTGCTATTTATCTGCAGACTAT
GAGCACAATATTCTCCGCCTCGTCAATCAATTTACCCAGAGCGCCACTAA
ACCTCCGCCCATTGCTAGTGTTTGGTCACGCCTTACACCCAACAGTAGCG
TCACTTTCAATCATTACTACTCTATGgtcttgaaaatgaaatacccGAAC
TTGAATATGATGGAGATACAAGGCTTATTTTTACGTAAGCTGAAGACATA
TGTTTATCTCCACAAGACAATGTTCGGAGATTACTACGGAGAAATCATGC
CGCAACCGTCGCCTCAAATTATGGAGAAAATCAAAGGTAAAAAGTCGAGG
GTTTCAGATTGATAAAACTTTGTTCTTGTATTTAAAACCCTTCCTTGTAT
ACTTAAATCCTTTAGATTTTGGATATTTTCACTCTGTTGTGTCGCGTGCG
CAGGGTTAGTAGTGTCTGGTGTGGCAATTTCCCTATCCTAGGGTTAGGCT
CATTCCGGATGATTCGGAGGCTTCACTTCTCTTCTCTTTTCAAAGTTGCT
CCATATTTTCTCATTAGTAGGGGACAAACCAGACGAGCACGAGATGTGCT
GTAATGTACATTTTTgcgcaaaatttaagaaatggtatcaatcattttcg
ttcaattcaatgttaaaaaaatcGTCAACAAAATCCTATCTACTTTTGAA
CCAATCACAGTCACTCACACGTGGTTGCATCCCACAAAAGATCAGGATTT
CTCCCCTTCAACCTTAGGCAgcgcttttctttttttcaaaaattttcaac
attttcctTTGCATTTTTAGGGacgtttttggattttttggaGCGAAACG
GTCTTGCTGATCTGGAGGAAATGTTTACAGCATCTCACACATTGCAAGGA
TACGGAAGAATCTCGGAAATTCCGGCACTTTACGGGTTGATGTGGAACAC
ACCTAAAGTGATCGGAAGTTTGGTCGAGCTGGTCAAAGGAAAGGCCGGAG
GTAAGagtgaaagtgaaaatgagAACGGGAATGAGAGTCGGGGTCTAaaa
gacgatatcggcttctgaattctccccgaatgattacccgtGATGCATTG
TCAGGGTTTGggttatcgtccgtgaatttttttgcgcaatgcatcatggg
caatcattcggggagaattcggtaaagccgatatcgtctattcgcAGACC
TGTATAAATACTTTCGATGTATTTCTCATCAGATACTTTGGAGTTAGAGG
GTGATAGCagtttagtttttatttttaaacgaGGAATAATTTACTCTGTA
CGAGTTGAACTGCTTGTATTATGTCAATTTCATTAGTCTGGTCTGCATAT
TACACTCTTTCTTGTATAAGAATTTCATAAGAgtaatgaggctcaaaatt
gccaaaaacttttaaacaatttaagaacaattctgAGAACCTGGTATTac
tcaattccaaaaaaattaggagtcaaagtactttaggcgtacaaactttc
gcgagcagaaacttttgcgagcagaaacttaattttgcgaggACGGAAAA
TCGCGAAAtgcacgacatttactttcgcgaatttaacggaaaaatatttt
tcgcgagcataaactttcgcgaatagaccttcctagaatttttaaagaca
tttactttcgcgaaaagagccaaaattcgcgaagatcgcgaaagtttctg
cttgcgaaagtttgtacgcctaaagtagtaaaaatcctaaaatacctcaa
tttcagtCTACGCCAGCCTTGAAAATATCtgatccttataaaaaaagtgt
atgtagGGGTTTTCAGATACTAGCTCAACCGTCTCGGAACTCAaggatgt
tttttttcttttttttctcagcaATTTACATGCTAGAGGATGGTTTCGAA
AATCTGTGGCGAACTattgcagaaaaaaatcaccTCAATGTAATGTTTAA
ATCGAAAGTACGGCATGTCATGTTGTCTGGTCGCCATGGAAACGAAAAAG
CTTACATTTACTACATCAACAATGGAAGATTACGGTACCGAAAATTTGAT
TTCCTTATATGGACACCCCCTGTCAACACCCTTATGCGCATTCTCAGTGG
AGTTGGTTTGCAAGAAGAACGAAAGTTGTTCCGAGGTATGACAAATAGTT
ATTACGCAACATCACTCGTTGATGACGTAGGCGGAAGGCGGGGCCAAAGC
TCAGTCAATTGGTGGATGGAGAATATCAAGGGcggaaaagatttttcagt
TTGGGCGAATCGAGATGCGTACACCATGTTTCATGACCTGAACGGGATGA
GATATAGTCAACAACAAACGGTAACCGGAAGCGACAACCAAACAGAAATC
CGGACTTCCGTTTTCTATCAGTACTCTCATAACAAACCACGGAAAGATCA
TTTAGCCTCAGTTTTAAAgcgacatttaaaaaaaatggggGCTAGTTCCG
TGGAAATCATCAAACAGTACCCGTGGAAGTATTTCACTCGTTTCACGGAA
CCTCAACTTTTGTCAGGTGCTATTTGGAAAGTGTTGGAGTTACAAGGGAA
ACGAAACATGTGGTTTGTTGGTGCTTCGGTCTCATTCGAGTCAGTCAAAA
GCGTGGTTGAGTATAACCAATTGTTAGTAGACCGAATGACTGAACCCAAT
AATTGAATATTCTGCAGTGCAATATTTTTCTCTAAACAAGACATTTAGTA
TTTTACTGTAAAGTACTCATGTCAAAGGATGAAAAACGAATGCGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006605-exon-sc0000069-1491911889:737648..738030 | TCONS_00006605-exon-sc0000069-1491911889:737648..738030 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1510915933:737648..738030 | TCONS_00006605-exon-sc0000069-1510915933:737648..738030 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1575043694:737648..738030 | TCONS_00006605-exon-sc0000069-1575043694:737648..738030 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1491911889:738974..739333 | TCONS_00006605-exon-sc0000069-1491911889:738974..739333 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1510915933:738974..739333 | TCONS_00006605-exon-sc0000069-1510915933:738974..739333 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1575043694:738974..739333 | TCONS_00006605-exon-sc0000069-1575043694:738974..739333 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1491911889:739818..739997 | TCONS_00006605-exon-sc0000069-1491911889:739818..739997 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1510915933:739818..739997 | TCONS_00006605-exon-sc0000069-1510915933:739818..739997 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1575043694:739818..739997 | TCONS_00006605-exon-sc0000069-1575043694:739818..739997 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1491911889:740869..741744 | TCONS_00006605-exon-sc0000069-1491911889:740869..741744 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1510915933:740869..741744 | TCONS_00006605-exon-sc0000069-1510915933:740869..741744 | Clytia hemisphaerica | exon |
| TCONS_00006605-exon-sc0000069-1575043694:740869..741744 | TCONS_00006605-exon-sc0000069-1575043694:740869..741744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:737648..741744 + |
Blast
The following BLAST results are available for this feature:
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