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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006604 ID=TCONS_00006604|Name=TCONS_00006604|organism=Clytia hemisphaerica|type=transcript|length=2777bpRun BLAST on NCBI protein sequence of TCONS_00006604-protein >TCONS_00006604-protein ID=TCONS_00006604-protein|Name=TCONS_00006604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp MAYLLKQRGFKNIQILEASNRIGGKSRTINYRGANHEMGTCYLSADYEHNRun BLAST on NCBI transcript from alignment at sc0000069:726103..741744+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006604 ID=TCONS_00006604|Name=TCONS_00006604|organism=Clytia hemisphaerica|type=transcript|length=15642bp|location=Sequence derived from alignment at sc0000069:726103..741744+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000069:726103..741744+ >TCONS_00006604 ID=TCONS_00006604|Name=TCONS_00006604|organism=Clytia hemisphaerica|type=CDS|length=5568bp|location=Sequence derived from alignment at sc0000069:726103..741744+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006604 vs. Swiss-Prot (Human)
Match: VATC1 (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4) HSP 1 Score: 459.144 bits (1180), Expect = 1.378e-152 Identity = 224/380 (58.95%), Postives = 285/380 (75.00%), Query Frame = 3
Query: 24 MTEFWLISAPGQKTTQQTWE---SCKARCEEFSLIYKFNLPDLKVGTLDTLVGLSDELGKLDTQVEGNVKKLANYFMDVLEEKQDKVMENLQVNDMYPEQYLTKFSWHKEKYPIHLPLKKISEIISVQVSKIDSDLKSKATIYNTIKNNLQSLERKETGSLLTRNLASIAKKEHFVLGSEYLQTLLVVVPRSLSQDWMTTYEKLTDMIVPKSSQLVIEDNEHSIYSVTMFKKVVDEFKHHAREKKFVVRDFVWDDSAIIASKEQLSKLAQDKKKQFGPLVRWLRVNFGELFIAWTHVKALRVFVESVLRYGLPVNFQAMILQPNKGKIRKLRDALDNLYAYLDGNQANISNDQVDIPGLVMAQHEYFSYVYLNMKINLFD 1154
MTEFWLISAPG+KT QQTWE + ++ ++ KFN+PDLKVGTLD LVGLSDEL KLD VEG VKK+A Y DVLE+ +DKV ENL N + Y+T+F W KYPI LK ISEII+ V++ID+DLKS+A+ YN +K NLQ+LERK GSLLTR+LA I KK+ FVL SEYL TLLVVVP+ DW+ YE L +M+VP+SS ++ ED + + +VT+F+K VD+F+H ARE KF+VRDF +++ + A KE++++L+ DKKKQFGPLVRWL+VNF E FIAW HVKALRVFVESVLRYGLPVNFQAM+LQPNK ++KLR+ L LY +LD + A I + +DIPGL ++Q EY+ YVY + NL +
Sbjct: 1 MTEFWLISAPGEKTCQQTWEKLHAATSKNNNLAVTSKFNIPDLKVGTLDVLVGLSDELAKLDAFVEGVVKKVAQYMADVLEDSKDKVQENLLANGVDLVTYITRFQWDMAKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLNLSQQEYYPYVYYKIDCNLLE 380 The following BLAST results are available for this feature:
BLAST of TCONS_00006604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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