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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006596 ID=TCONS_00006596|Name=TCONS_00006596|organism=Clytia hemisphaerica|type=transcript|length=1995bp
CATAAAGAAATAATTCAATAAAGGACTTTTGGGGTGAAAACAATGGTATT
CTCATGCTATAAATACTGGCTTttctcaaatttaaaaatcagtgAAGACA
AACGACAAATGAAGAATTTGGTAACGAAGTAAACATCAACCAAGATTAtt
AAGTTTCACTGGATCACAAATTATGGCATTACCTCGACTTATGTTTCTTG
GACTTATCCTGGTGGCTTCGTCTGTTATATCTAGAAATATAACAAAACGA
TCAGTTGCAAACTACACTGTCGCAAGAAATAGCTCCCTTAGCATTAATAA
GGTTTTCAAAAGGATGGTCAGCAGCCAATCTGAAACAGGACTCCAACCTA
AATCAGATTCGGAGCACGTTCTCAATAAACGCTGGACATCACAGCGTTCT
GTGGCAAACTGGTGGCATAGTTTTGATGTCCGAGGATGGAATATGTGTCC
TAGTGGAACTTACATGACAGGTCTTTGGAGGAACAATCGTCACACTTGGC
GTGGTGATAGCATTGTATTGATTGAGGAAGCTGAATGCTATACACCACCG
TCTTATTTACGTGCGACAGCTGGTGAACGATCGTGTTACACGCTTAACAT
CTGGCTGCATTGGGATCGTGACGACCGCTGGGCGATTTGCCGAAATGGAC
ATTACATGAATGGAATTTATAACACCAAAGGATCACACCTTCACAATATT
GAAGAGTTCCATTGTTGCAAACCAAAAAGTCATCATACGTCTTGGGGACA
TTGCTATAATCAAAGCGTTCGAAGATCGTTAGATGAAAAAGGCTGGTCTA
GATGTACTTATGGTTACTATATGGCTGGCATGTATAAAGGTCATTGTAAT
GATTTGTACTGCATTGAATCCTTCAAATGTTGTCGCATGTAGAGTACTTT
AATgcgataaactttcgcggggacctaatttcgcggatggcactattggg
tggcaattagccaccattcaaatagtatttatttgacatatattgagttt
tgtttagaaatatttcgcggattaggcccttccaaatttccatagggact
taatttcgcgaattttcgtgGATGacccgcgaaatccgcgaaatttaatc
cccgcgaaagtttatcctaTTAAAGTAGCTACAGTGTTCAAGTGGTTTGC
TTGTTCCAAatattcattttatattttctgcACTTTTTAGCTAAGGCCAG
TTACCGTGAGCATCACATTGTGAGTTCTACGGTTCTTGGAAATTTGTTCC
CCAAAAGTTTGGCCCCTCCCCCTAGAATTTGACCCCCCTCCCTAGAATTT
GGCCTCTCCCCCTAGaatttgacccctcccctccttTGCCTCTCGGGAAA
TTGATCTCCCAATGTCCATCTTCGATGTACTCTTTGAATATAAATCATAT
TGAAAcattttcgataaaaattctTAATGTCCGTCCTCACAGGTCAGAGA
AAGCTAACTGGAGATGCTCACGGTAAAAGCCAACCGGTCCACGAAATTTG
CACTTTTTCTTCGAGGGTTAACATTTTTATACATAATCGTATCTTTGTCT
TAATTGGACAATCGTAAGTACTAACAAGGCTTTATTACCTCGATCAattt
aactttaattttttatgTAATTCTAAAAACTTGATTGTAGATTTACAGTT
TTGGGTTCAATATtgctgacctttataaaccctacTGTACAAAGATATAT
CCACcgtctttgattggagtttctTTTAAGTGGTACCTGCAGAGAAGCAA
TTGATAACTTGTGCTAAGCTTAATATCAAATggcggcgctacatcatcac
aaGTAACCGAGGTAGAAGatcatttacaccgctatcgagtagtgctacca
ttagggtaccactttcaacaAACTCCGTCGAAGATTTGTTCGACCAGGAT
TGAGAGATTGTCTTTAATGCAACAACATCGTATTGTAATATTTTCGATAT
ATTCCTTCATTATTTTTagattgaataaatttttgtaCTTGGAAT Run BLAST on NCBI transcript from alignment at sc0000069:502283..507030+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006596 ID=TCONS_00006596|Name=TCONS_00006596|organism=Clytia hemisphaerica|type=transcript|length=4748bp|location=Sequence derived from alignment at sc0000069:502283..507030+ (Clytia hemisphaerica)
CATAAAGAAATAATTCAATAAAGGACTTTTGGGGTGAAAACAATGGTATT
CTCATGCTATAAATACTGGCTTttctcaaatttaaaaatcagtgAAGACA
AACGACAAATGAAGAATTTGGTAACGAAGTAAACATCAACCAAGATTAtt
gtaagttttttttcatgaacATTTTATGAAACTTGAAATAAAGCTTATTt
caaagacacccctgtctcacagcaccggtggaaattttttcctcaagggg
ggggggggggggggaaaaaaattttttttaaaaaccccCCGGGTCCCACG
CCCCGGGGGTTTTTTTttcccaaggggggggggggggggggaaaaaaatt
ttttttaaaaaccccCCGGGTCCCACGCCCCGGGGGTTTTTTTttcccaa
ggggggggggggggggggaaaaaaattttttttaaaaaccccCCGGGTCC
CACGCCCCGGGGGTTTTTTTttcccaaggggggggggggggggggaaaaa
aattttttttaaaaaccccCCGGGTCCCACGCCCCGGGGGTTTTTTTttc
ccaaggggggggggggggggggatgaaaattcctattgaaatctccatgg
ggatagaaattctattgtcccAACGTTTAAAAAACCAGGGGTGATGGTTT
TAGCGTATAATTTTTAAACACTGAATTTAGAACAgggatgaaatgaaagt
caaCTTCCAAGTGGGGCTGAAGTTCCGTGGTATTTTTCAACCAGGGACAa
aattttctagtggggctGTGGGACCACAGGGGTGTACTTAAACTTAACTT
AAATGAAAGGTTCTGAATATCAGTAAAGATTAATAAAAAACATACAACTT
CTAAAAGACTGACTTTTTGAGTGACTAAATCTTACGAAAAATTTATCTTT
AGAGGGACAAGATTGGccaaaaagtgacccttagagagtaAAATTTTCGA
AGAAACCCTTGGTTTGGGAAAAGGAAGAGAGACTTAGAGAGtctattttg
actttttgttgtttttgtaacccttagagagacttgaGAAGGTACTTACC
GttcacacaacgttatttcaatgTCATCTCTTCTCTTCACAAATAGCGAA
TGTGGTAAAGCACCAAATGTATAATAATTTTCTGTTTAGAACGTTTCAGA
AGTTTCACTGGATCACAAATTATGGCATTACCTCGACTTATGTTTCTTGG
ACTTATCCTGGTGGCTTCGTCTGTTATATCTAGAAATATAACAAAACGAT
CAGTTGCAAACTACACTGTCGCAAGAAATAGCTCCCTTAGCATTAATAAG
GTCAGTACACTTTTAAAGGTTACTATATACATAAAGAAGTTTGCCGAGAG
GAGGATTTAGTtggcgagcacctcactaaaaaccgggatgtTTTATCTCg
ctagtgagttccactttgacgattttcgaaaaatagaagcctttcataTG
ATTTGacgcaaatttgatttttttttgctaaccGCAAGAGCTTCGAacgt
taaaagtgacgtcaaaaatcgaatgtttagagcccgaaaacccggacTTA
AAACATTCGACATaatcgcaaagtggaataggtaaattgcgtagaaaaaa
cgtgggtgacgtctagtataggctaggaTTTAGTATGAAATTTAGATTTG
CCACCAAACAAAAAGTAAACGCACACCGAAAAATGCcacgtgtttttttt
tcattttaatgttGGAGGTCTTCGGCTTGCCGTCTCTGAAAACTTATCAC
ACATTAAATTCGGCTCTTCGGCCGCTGGAAAACCgcatatttaaatttta
aaagtcgGCCGCAAGCTTAGATCTTCGTTCGTTCACGAATAACTAAACCT
TTGTCTTTACACAGACCTAGTATCTACGgctgatttcaaaattcattgcc
gtagagggtctgttgtcattgcctttttctcatttgagatttttcaaatt
gaccgctgcgatggagtgtttgTGAGAGAAgggagacgacgagagaagtg
tCGCACTctataaatcatactttatcgcagaggtctccgtacggagATTC
GGTTTATTTCATATTAAAAATCAGTGTAAACAAATCACTgaatatcaata
ttttaaattCTTAAACAGGTTTTCAAAAGGATGGTCAGCAGCCAATCTGA
AACAGGACTCCAACCTAAATCAGATTCGGAGCACGTTCTCAATAAACGCT
GGACATCACAGCGTTCTGTGGCAAACTGGTGGCATAGTTTTGATGTCCGA
GGATGGAATATGTGTCCTAGTGGAACTTACATGACAGGTCTTTGGAGGAA
CAATCGTCACACTTGGCGTGGTGATAGCATTGTATTGATTGAGGAAGCTG
AATGCTATACACCACCGTCTTATTTACGTGCGACAGGTATTTagacgaga
ccaatttaatCTATTGTTCTACGGGGAGACCGTCAGAAAAATATGGGTTG
GTCGGCCAGTCggtataataaaaatgaatttccTAAATTGTAAAGTCGGA
AGGTCAAGATCTAAAGATTCTGTGACGTTTTGAAGTGGTAGACATTTTCC
TCTTTATCGTTGAGCGACTTTTGTTGCTATTTCCATTGTGATATTTGAAA
TTCATCTAAGTTCTTGGATGAATTTACACTTTTTCAGCTTGCTCCGTTAA
AAACATCTTGGAAAAACTTAGTCCATTGTCCTCCTTTTCAAATTCGATAT
CTATTATTTTTCGTGGAAAAAATAGGGTCAGTTGGGtctgtagaacaata
aattaatttggtctcacTTAGTAAGTGTACTCTTTAAATAAGTGtcatta
tacacgtttttttataagaacaaactatatcagaacataagacttcgacg
accagaattttaaagaataggttaagaacattttaaggctttgaggtCTC
ACCGAATTTTTTGGTAAGATTAGGAACAACTCTGAACAATGTAAAAATTT
GGTAGAGTTAGAAATAAATCGTCTATATTAACGCTTATAaagcaaaattt
ggttgggtCTTAGTTGTTCATTTGTCTTTCAAGTCTTATATTTTAGGCTC
TAACGAGGTCAAGAGGACTCAAAATCAATTGAGATACGACATTAGTATGT
TTGTAGCTCGTTTAAAATATGATTCGAATCTCATCCTTGCGTTTATAAAA
TAGAAAGTAGTTAATAGAAAATCCATAATGCATTTCGTTTCCATGGGTTC
ATTTTGGTAGTCAATGGCCAAAAAAACTGTCGTAACCCTGGAAAAACGAA
ATGCACCACGTTTACTTTTGCTACATGCAAATAAGACCTTtagctaaaaa
caaaactaTTTATCACTTCTAGCTGGTGAACGATCGTGTTACACGCTTAA
CATCTGGCTGCATTGGGATCGTGACGACCGCTGGGCGATTTGCCGAAATG
GACATTACATGAATGGAATTTATAACACCAAAGGATCACACCTTCACAAT
ATTGAAGAGTTCCATTGTTGCAAACCAAAAAGTCATCATACGTCTTGGGG
ACATTGCTATAATCAAAGCGTTCGAAGATCGTTAGATGAAAAAGGCTGGT
CTAGATGTACTTATGGTTACTATATGGCTGGCATGTATAAAGGTCATTGT
AATGATTTGTACTGCATTGAATCCTTCAAATGTTGTCGCATGTAGAGTAC
TTTAATgcgataaactttcgcggggacctaatttcgcggatggcactatt
gggtggcaattagccaccattcaaatagtatttatttgacatatattgag
ttttgtttagaaatatttcgcggattaggcccttccaaatttccataggg
acttaatttcgcgaattttcgtgGATGacccgcgaaatccgcgaaattta
atccccgcgaaagtttatcctaTTAAAGTAGCTACAGTGTTCAAGTGGTT
TGCTTGTTCCAAatattcattttatattttctgcACTTTTTAGCTAAGGC
CAGTTACCGTGAGCATCACATTGTGAGTTCTACGGTTCTTGGAAATTTGT
TCCCCAAAAGTTTGGCCCCTCCCCCTAGAATTTGACCCCCCTCCCTAGAA
TTTGGCCTCTCCCCCTAGaatttgacccctcccctccttTGCCTCTCGGG
AAATTGATCTCCCAATGTCCATCTTCGATGTACTCTTTGAATATAAATCA
TATTGAAAcattttcgataaaaattctTAATGTCCGTCCTCACAGGTCAG
AGAAAGCTAACTGGAGATGCTCACGGTAAAAGCCAACCGGTCCACGAAAT
TTGCACTTTTTCTTCGAGGGTTAACATTTTTATACATAATCGTATCTTTG
TCTTAATTGGACAATCGTAAGTACTAACAAGGCTTTATTACCTCGATCAa
tttaactttaattttttatgTAATTCTAAAAACTTGATTGTAGATTTACA
GTTTTGGGTTCAATATtgctgacctttataaaccctacTGTACAAAGATA
TATCCACcgtctttgattggagtttctTTTAAGTGGTACCTGCAGAGAAG
CAATTGATAACTTGTGCTAAGCTTAATATCAAATggcggcgctacatcat
cacaaGTAACCGAGGTAGAAGatcatttacaccgctatcgagtagtgcta
ccattagggtaccactttcaacaAACTCCGTCGAAGATTTGTTCGACCAG
GATTGAGAGATTGTCTTTAATGCAACAACATCGTATTGTAATATTTTCGA
TATATTCCTTCATTATTTTTagattgaataaatttttgtaCTTGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006596-exon-sc0000069-1491911889:502283..502432 | TCONS_00006596-exon-sc0000069-1491911889:502283..502432 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1510915933:502283..502432 | TCONS_00006596-exon-sc0000069-1510915933:502283..502432 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1575043694:502283..502432 | TCONS_00006596-exon-sc0000069-1575043694:502283..502432 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1491911889:503432..503582 | TCONS_00006596-exon-sc0000069-1491911889:503432..503582 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1510915933:503432..503582 | TCONS_00006596-exon-sc0000069-1510915933:503432..503582 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1575043694:503432..503582 | TCONS_00006596-exon-sc0000069-1575043694:503432..503582 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1491911889:504401..504668 | TCONS_00006596-exon-sc0000069-1491911889:504401..504668 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1510915933:504401..504668 | TCONS_00006596-exon-sc0000069-1510915933:504401..504668 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1575043694:504401..504668 | TCONS_00006596-exon-sc0000069-1575043694:504401..504668 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1491911889:505605..507030 | TCONS_00006596-exon-sc0000069-1491911889:505605..507030 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1510915933:505605..507030 | TCONS_00006596-exon-sc0000069-1510915933:505605..507030 | Clytia hemisphaerica | exon |
| TCONS_00006596-exon-sc0000069-1575043694:505605..507030 | TCONS_00006596-exon-sc0000069-1575043694:505605..507030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:502283..507030 + |
Blast
The following BLAST results are available for this feature:
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