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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006595 ID=TCONS_00006595|Name=TCONS_00006595|organism=Clytia hemisphaerica|type=transcript|length=2010bp
GGAAGCATAAAGAAATAATTCAATAAAGGACTTTTGGGGTGAAAACAATG
GTATTCTCATGCTATAAATACTGGCTTttctcaaatttaaaaatcagtgA
AGACAAACGACAAATGAAGAATTTGGTAACGAAGTAAACATCAACCAAGA
TTAttAACGTTTCAGAAGTTTCACTGGATCACAAATTATGGCATTACCTC
GACTTATGTTTCTTGGACTTATCCTGGTGGCTTCGTCTGTTATATCTAGA
AATATAACAAAACGATCAGTTGCAAACTACACTGTCGCAAGAAATAGCTC
CCTTAGCATTAATAAGGTTTTCAAAAGGATGGTCAGCAGCCAATCTGAAA
CAGGACTCCAACCTAAATCAGATTCGGAGCACGTTCTCAATAAACGCTGG
ACATCACAGCGTTCTGTGGCAAACTGGTGGCATAGTTTTGATGTCCGAGG
ATGGAATATGTGTCCTAGTGGAACTTACATGACAGGTCTTTGGAGGAACA
ATCGTCACACTTGGCGTGGTGATAGCATTGTATTGATTGAGGAAGCTGAA
TGCTATACACCACCGTCTTATTTACGTGCGACAGCTGGTGAACGATCGTG
TTACACGCTTAACATCTGGCTGCATTGGGATCGTGACGACCGCTGGGCGA
TTTGCCGAAATGGACATTACATGAATGGAATTTATAACACCAAAGGATCA
CACCTTCACAATATTGAAGAGTTCCATTGTTGCAAACCAAAAAGTCATCA
TACGTCTTGGGGACATTGCTATAATCAAAGCGTTCGAAGATCGTTAGATG
AAAAAGGCTGGTCTAGATGTACTTATGGTTACTATATGGCTGGCATGTAT
AAAGGTCATTGTAATGATTTGTACTGCATTGAATCCTTCAAATGTTGTCG
CATGTAGAGTACTTTAATgcgataaactttcgcggggacctaatttcgcg
gatggcactattgggtggcaattagccaccattcaaatagtatttatttg
acatatattgagttttgtttagaaatatttcgcggattaggcccttccaa
atttccatagggacttaatttcgcgaattttcgtgGATGacccgcgaaat
ccgcgaaatttaatccccgcgaaagtttatcctaTTAAAGTAGCTACAGT
GTTCAAGTGGTTTGCTTGTTCCAAatattcattttatattttctgcACTT
TTTAGCTAAGGCCAGTTACCGTGAGCATCACATTGTGAGTTCTACGGTTC
TTGGAAATTTGTTCCCCAAAAGTTTGGCCCCTCCCCCTAGAATTTGACCC
CCCTCCCTAGAATTTGGCCTCTCCCCCTAGaatttgacccctcccctcct
tTGCCTCTCGGGAAATTGATCTCCCAATGTCCATCTTCGATGTACTCTTT
GAATATAAATCATATTGAAAcattttcgataaaaattctTAATGTCCGTC
CTCACAGGTCAGAGAAAGCTAACTGGAGATGCTCACGGTAAAAGCCAACC
GGTCCACGAAATTTGCACTTTTTCTTCGAGGGTTAACATTTTTATACATA
ATCGTATCTTTGTCTTAATTGGACAATCGTAAGTACTAACAAGGCTTTAT
TACCTCGATCAatttaactttaattttttatgTAATTCTAAAAACTTGAT
TGTAGATTTACAGTTTTGGGTTCAATATtgctgacctttataaaccctac
TGTACAAAGATATATCCACcgtctttgattggagtttctTTTAAGTGGTA
CCTGCAGAGAAGCAATTGATAACTTGTGCTAAGCTTAATATCAAATggcg
gcgctacatcatcacaaGTAACCGAGGTAGAAGatcatttacaccgctat
cgagtagtgctaccattagggtaccactttcaacaAACTCCGTCGAAGAT
TTGTTCGACCAGGATTGAGAGATTGTCTTTAATGCAACAACATCGTATTG
TAATATTTTCGATATATTCCTTCATTATTTTTagattgaataaatttttg
taCTTGGAAT Run BLAST on NCBI protein sequence of TCONS_00006595-protein >TCONS_00006595-protein ID=TCONS_00006595-protein|Name=TCONS_00006595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MALPRLMFLGLILVASSVISRNITKRSVANYTVARNSSLSINKVFKRMVS
SQSETGLQPKSDSEHVLNKRWTSQRSVANWWHSFDVRGWNMCPSGTYMTG
LWRNNRHTWRGDSIVLIEEAECYTPPSYLRATAGERSCYTLNIWLHWDRD
DRWAICRNGHYMNGIYNTKGSHLHNIEEFHCCKPKSHHTSWGHCYNQSVR
RSLDEKGWSRCTYGYYMAGMYKGHCNDLYCIESFKCCRM Run BLAST on NCBI transcript from alignment at sc0000069:502278..507030+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006595 ID=TCONS_00006595|Name=TCONS_00006595|organism=Clytia hemisphaerica|type=transcript|length=4753bp|location=Sequence derived from alignment at sc0000069:502278..507030+ (Clytia hemisphaerica)
GGAAGCATAAAGAAATAATTCAATAAAGGACTTTTGGGGTGAAAACAATG
GTATTCTCATGCTATAAATACTGGCTTttctcaaatttaaaaatcagtgA
AGACAAACGACAAATGAAGAATTTGGTAACGAAGTAAACATCAACCAAGA
TTAttgtaagttttttttcatgaacATTTTATGAAACTTGAAATAAAGCT
TATTtcaaagacacccctgtctcacagcaccggtggaaattttttcctca
aggggggggggggggggggaaaaaaattttttttaaaaaccccCCGGGTC
CCACGCCCCGGGGGTTTTTTTttcccaaggggggggggggggggggaaaa
aaattttttttaaaaaccccCCGGGTCCCACGCCCCGGGGGTTTTTTTtt
cccaaggggggggggggggggggaaaaaaattttttttaaaaaccccCCG
GGTCCCACGCCCCGGGGGTTTTTTTttcccaagggggggggggggggggg
aaaaaaattttttttaaaaaccccCCGGGTCCCACGCCCCGGGGGTTTTT
TTttcccaaggggggggggggggggggatgaaaattcctattgaaatctc
catggggatagaaattctattgtcccAACGTTTAAAAAACCAGGGGTGAT
GGTTTTAGCGTATAATTTTTAAACACTGAATTTAGAACAgggatgaaatg
aaagtcaaCTTCCAAGTGGGGCTGAAGTTCCGTGGTATTTTTCAACCAGG
GACAaaattttctagtggggctGTGGGACCACAGGGGTGTACTTAAACTT
AACTTAAATGAAAGGTTCTGAATATCAGTAAAGATTAATAAAAAACATAC
AACTTCTAAAAGACTGACTTTTTGAGTGACTAAATCTTACGAAAAATTTA
TCTTTAGAGGGACAAGATTGGccaaaaagtgacccttagagagtaAAATT
TTCGAAGAAACCCTTGGTTTGGGAAAAGGAAGAGAGACTTAGAGAGtcta
ttttgactttttgttgtttttgtaacccttagagagacttgaGAAGGTAC
TTACCGttcacacaacgttatttcaatgTCATCTCTTCTCTTCACAAATA
GCGAATGTGGTAAAGCACCAAATGTATAATAATTTTCTGTTTAGAACGTT
TCAGAAGTTTCACTGGATCACAAATTATGGCATTACCTCGACTTATGTTT
CTTGGACTTATCCTGGTGGCTTCGTCTGTTATATCTAGAAATATAACAAA
ACGATCAGTTGCAAACTACACTGTCGCAAGAAATAGCTCCCTTAGCATTA
ATAAGGTCAGTACACTTTTAAAGGTTACTATATACATAAAGAAGTTTGCC
GAGAGGAGGATTTAGTtggcgagcacctcactaaaaaccgggatgtTTTA
TCTCgctagtgagttccactttgacgattttcgaaaaatagaagcctttc
ataTGATTTGacgcaaatttgatttttttttgctaaccGCAAGAGCTTCG
Aacgttaaaagtgacgtcaaaaatcgaatgtttagagcccgaaaacccgg
acTTAAAACATTCGACATaatcgcaaagtggaataggtaaattgcgtaga
aaaaacgtgggtgacgtctagtataggctaggaTTTAGTATGAAATTTAG
ATTTGCCACCAAACAAAAAGTAAACGCACACCGAAAAATGCcacgtgttt
ttttttcattttaatgttGGAGGTCTTCGGCTTGCCGTCTCTGAAAACTT
ATCACACATTAAATTCGGCTCTTCGGCCGCTGGAAAACCgcatatttaaa
ttttaaaagtcgGCCGCAAGCTTAGATCTTCGTTCGTTCACGAATAACTA
AACCTTTGTCTTTACACAGACCTAGTATCTACGgctgatttcaaaattca
ttgccgtagagggtctgttgtcattgcctttttctcatttgagatttttc
aaattgaccgctgcgatggagtgtttgTGAGAGAAgggagacgacgagag
aagtgtCGCACTctataaatcatactttatcgcagaggtctccgtacgga
gATTCGGTTTATTTCATATTAAAAATCAGTGTAAACAAATCACTgaatat
caatattttaaattCTTAAACAGGTTTTCAAAAGGATGGTCAGCAGCCAA
TCTGAAACAGGACTCCAACCTAAATCAGATTCGGAGCACGTTCTCAATAA
ACGCTGGACATCACAGCGTTCTGTGGCAAACTGGTGGCATAGTTTTGATG
TCCGAGGATGGAATATGTGTCCTAGTGGAACTTACATGACAGGTCTTTGG
AGGAACAATCGTCACACTTGGCGTGGTGATAGCATTGTATTGATTGAGGA
AGCTGAATGCTATACACCACCGTCTTATTTACGTGCGACAGGTATTTaga
cgagaccaatttaatCTATTGTTCTACGGGGAGACCGTCAGAAAAATATG
GGTTGGTCGGCCAGTCggtataataaaaatgaatttccTAAATTGTAAAG
TCGGAAGGTCAAGATCTAAAGATTCTGTGACGTTTTGAAGTGGTAGACAT
TTTCCTCTTTATCGTTGAGCGACTTTTGTTGCTATTTCCATTGTGATATT
TGAAATTCATCTAAGTTCTTGGATGAATTTACACTTTTTCAGCTTGCTCC
GTTAAAAACATCTTGGAAAAACTTAGTCCATTGTCCTCCTTTTCAAATTC
GATATCTATTATTTTTCGTGGAAAAAATAGGGTCAGTTGGGtctgtagaa
caataaattaatttggtctcacTTAGTAAGTGTACTCTTTAAATAAGTGt
cattatacacgtttttttataagaacaaactatatcagaacataagactt
cgacgaccagaattttaaagaataggttaagaacattttaaggctttgag
gtCTCACCGAATTTTTTGGTAAGATTAGGAACAACTCTGAACAATGTAAA
AATTTGGTAGAGTTAGAAATAAATCGTCTATATTAACGCTTATAaagcaa
aatttggttgggtCTTAGTTGTTCATTTGTCTTTCAAGTCTTATATTTTA
GGCTCTAACGAGGTCAAGAGGACTCAAAATCAATTGAGATACGACATTAG
TATGTTTGTAGCTCGTTTAAAATATGATTCGAATCTCATCCTTGCGTTTA
TAAAATAGAAAGTAGTTAATAGAAAATCCATAATGCATTTCGTTTCCATG
GGTTCATTTTGGTAGTCAATGGCCAAAAAAACTGTCGTAACCCTGGAAAA
ACGAAATGCACCACGTTTACTTTTGCTACATGCAAATAAGACCTTtagct
aaaaacaaaactaTTTATCACTTCTAGCTGGTGAACGATCGTGTTACACG
CTTAACATCTGGCTGCATTGGGATCGTGACGACCGCTGGGCGATTTGCCG
AAATGGACATTACATGAATGGAATTTATAACACCAAAGGATCACACCTTC
ACAATATTGAAGAGTTCCATTGTTGCAAACCAAAAAGTCATCATACGTCT
TGGGGACATTGCTATAATCAAAGCGTTCGAAGATCGTTAGATGAAAAAGG
CTGGTCTAGATGTACTTATGGTTACTATATGGCTGGCATGTATAAAGGTC
ATTGTAATGATTTGTACTGCATTGAATCCTTCAAATGTTGTCGCATGTAG
AGTACTTTAATgcgataaactttcgcggggacctaatttcgcggatggca
ctattgggtggcaattagccaccattcaaatagtatttatttgacatata
ttgagttttgtttagaaatatttcgcggattaggcccttccaaatttcca
tagggacttaatttcgcgaattttcgtgGATGacccgcgaaatccgcgaa
atttaatccccgcgaaagtttatcctaTTAAAGTAGCTACAGTGTTCAAG
TGGTTTGCTTGTTCCAAatattcattttatattttctgcACTTTTTAGCT
AAGGCCAGTTACCGTGAGCATCACATTGTGAGTTCTACGGTTCTTGGAAA
TTTGTTCCCCAAAAGTTTGGCCCCTCCCCCTAGAATTTGACCCCCCTCCC
TAGAATTTGGCCTCTCCCCCTAGaatttgacccctcccctccttTGCCTC
TCGGGAAATTGATCTCCCAATGTCCATCTTCGATGTACTCTTTGAATATA
AATCATATTGAAAcattttcgataaaaattctTAATGTCCGTCCTCACAG
GTCAGAGAAAGCTAACTGGAGATGCTCACGGTAAAAGCCAACCGGTCCAC
GAAATTTGCACTTTTTCTTCGAGGGTTAACATTTTTATACATAATCGTAT
CTTTGTCTTAATTGGACAATCGTAAGTACTAACAAGGCTTTATTACCTCG
ATCAatttaactttaattttttatgTAATTCTAAAAACTTGATTGTAGAT
TTACAGTTTTGGGTTCAATATtgctgacctttataaaccctacTGTACAA
AGATATATCCACcgtctttgattggagtttctTTTAAGTGGTACCTGCAG
AGAAGCAATTGATAACTTGTGCTAAGCTTAATATCAAATggcggcgctac
atcatcacaaGTAACCGAGGTAGAAGatcatttacaccgctatcgagtag
tgctaccattagggtaccactttcaacaAACTCCGTCGAAGATTTGTTCG
ACCAGGATTGAGAGATTGTCTTTAATGCAACAACATCGTATTGTAATATT
TTCGATATATTCCTTCATTATTTTTagattgaataaatttttgtaCTTGG
AAT Coding sequence (CDS) from alignment at sc0000069:502278..507030+ >TCONS_00006595 ID=TCONS_00006595|Name=TCONS_00006595|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000069:502278..507030+ (Clytia hemisphaerica)
ATGGCATTACCTCGACTTATGTTTCTTGGACTTATCCTGGTGGCTTCGTC
TGTTATATCTAGAAATATAACAAAACGATCAGTTGCAAACTACACTGTCG
CAAGAAATAGCTCCCTTAGCATTAATAAGGTTTTCAAAAGGATGGTCAGC
AGCCAATCTGAAACAGGACTCCAACCTAAATCAGATTCGGAGCACGTTCT
CAATAAACGCTGGACATCACAGCGTTCTGTGGCAAACTGGTGGCATAGTT
TTGATGTCCGAGGATGGAATATGTGTCCTAGTGGAACTTACATGACAGGT
CTTTGGAGGAACAATCGTCACACTTGGCGTGGTGATAGCATTGTATTGAT
TGAGGAAGCTGAATGCTATACACCACCGTCTTATTTACGTGCGACAGCTG
GTGAACGATCGTGTTACACGCTTAACATCTGGCTGCATTGGGATCGTGAC
GACCGCTGGGCGATTTGCCGAAATGGACATTACATGAATGGAATTTATAA
CACCAAAGGATCACACCTTCACAATATTGAAGAGTTCCATTGTTGCAAAC
CAAAAAGTCATCATACGTCTTGGGGACATTGCTATAATCAAAGCGTTCGA
AGATCGTTAGATGAAAAAGGCTGGTCTAGATGTACTTATGGTTACTATAT
GGCTGGCATGTATAAAGGTCATTGTAATGATTTGTACTGCATTGAATCCT
TCAAATGTTGTCGCATGTAGATGGCATTACCTCGACTTATGTTTCTTGGA
CTTATCCTGGTGGCTTCGTCTGTTATATCTAGAAATATAACAAAACGATC
AGTTGCAAACTACACTGTCGCAAGAAATAGCTCCCTTAGCATTAATAAGG
TTTTCAAAAGGATGGTCAGCAGCCAATCTGAAACAGGACTCCAACCTAAA
TCAGATTCGGAGCACGTTCTCAATAAACGCTGGACATCACAGCGTTCTGT
GGCAAACTGGTGGCATAGTTTTGATGTCCGAGGATGGAATATGTGTCCTA
GTGGAACTTACATGACAGGTCTTTGGAGGAACAATCGTCACACTTGGCGT
GGTGATAGCATTGTATTGATTGAGGAAGCTGAATGCTATACACCACCGTC
TTATTTACGTGCGACAGCTGGTGAACGATCGTGTTACACGCTTAACATCT
GGCTGCATTGGGATCGTGACGACCGCTGGGCGATTTGCCGAAATGGACAT
TACATGAATGGAATTTATAACACCAAAGGATCACACCTTCACAATATTGA
AGAGTTCCATTGTTGCAAACCAAAAAGTCATCATACGTCTTGGGGACATT
GCTATAATCAAAGCGTTCGAAGATCGTTAGATGAAAAAGGCTGGTCTAGA
TGTACTTATGGTTACTATATGGCTGGCATGTATAAAGGTCATTGTAATGA
TTTGTACTGCATTGAATCCTTCAAATGTTGTCGCATGTAGATGGCATTAC
CTCGACTTATGTTTCTTGGACTTATCCTGGTGGCTTCGTCTGTTATATCT
AGAAATATAACAAAACGATCAGTTGCAAACTACACTGTCGCAAGAAATAG
CTCCCTTAGCATTAATAAGGTTTTCAAAAGGATGGTCAGCAGCCAATCTG
AAACAGGACTCCAACCTAAATCAGATTCGGAGCACGTTCTCAATAAACGC
TGGACATCACAGCGTTCTGTGGCAAACTGGTGGCATAGTTTTGATGTCCG
AGGATGGAATATGTGTCCTAGTGGAACTTACATGACAGGTCTTTGGAGGA
ACAATCGTCACACTTGGCGTGGTGATAGCATTGTATTGATTGAGGAAGCT
GAATGCTATACACCACCGTCTTATTTACGTGCGACAGCTGGTGAACGATC
GTGTTACACGCTTAACATCTGGCTGCATTGGGATCGTGACGACCGCTGGG
CGATTTGCCGAAATGGACATTACATGAATGGAATTTATAACACCAAAGGA
TCACACCTTCACAATATTGAAGAGTTCCATTGTTGCAAACCAAAAAGTCA
TCATACGTCTTGGGGACATTGCTATAATCAAAGCGTTCGAAGATCGTTAG
ATGAAAAAGGCTGGTCTAGATGTACTTATGGTTACTATATGGCTGGCATG
TATAAAGGTCATTGTAATGATTTGTACTGCATTGAATCCTTCAAATGTTG
TCGCATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006595-exon-sc0000069-1491911889:502278..502432 | TCONS_00006595-exon-sc0000069-1491911889:502278..502432 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1510915933:502278..502432 | TCONS_00006595-exon-sc0000069-1510915933:502278..502432 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1575043694:502278..502432 | TCONS_00006595-exon-sc0000069-1575043694:502278..502432 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1491911889:503422..503582 | TCONS_00006595-exon-sc0000069-1491911889:503422..503582 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1510915933:503422..503582 | TCONS_00006595-exon-sc0000069-1510915933:503422..503582 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1575043694:503422..503582 | TCONS_00006595-exon-sc0000069-1575043694:503422..503582 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1491911889:504401..504668 | TCONS_00006595-exon-sc0000069-1491911889:504401..504668 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1510915933:504401..504668 | TCONS_00006595-exon-sc0000069-1510915933:504401..504668 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1575043694:504401..504668 | TCONS_00006595-exon-sc0000069-1575043694:504401..504668 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1491911889:505605..507030 | TCONS_00006595-exon-sc0000069-1491911889:505605..507030 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1510915933:505605..507030 | TCONS_00006595-exon-sc0000069-1510915933:505605..507030 | Clytia hemisphaerica | exon |
| TCONS_00006595-exon-sc0000069-1575043694:505605..507030 | TCONS_00006595-exon-sc0000069-1575043694:505605..507030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:502278..507030 + |
Blast
The following BLAST results are available for this feature:
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