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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006594 ID=TCONS_00006594|Name=TCONS_00006594|organism=Clytia hemisphaerica|type=transcript|length=627bp
CTGATATTTGCAACCCTTGCAAGGATCCATGTTGTAAAAGGAGATTCCAT
TTATTTTAAAACACTGCAACAACAAGTGGGCAGACAAAGCATGAAAATGT
TACCTCCTCCTAGTATAACGGTAGACTGAAGTTCTAAAGCTGATCCAAGG
ATTGTCAAATGAAAGTAATGTGTGGAAACTTTTTGTAACCCAGACGCCTG
TAACCCTGAATTGCCAGTGGAATGGAGATTAAAGAGcaaacacaaagaaa
aacatCAAAGATGAATTTTGAGCATGATgtagtttatttatttatcaacA
TGACTAAGGTGGATATGGTTAAGATTTTGAATTAACTTAATCTTAAGTTC
TTAGTCTCTTTCATAACTATTATAGATATGGTTTGTTAGATGGTTGTGGA
CCCGGCAAGATTTATTTCACTAATTTGTAACACTCTGATAACCAAAGAAC
TTTCACGGGCAAGTATTCTTCTTATCTTCTGTATCAATTTGAGCGGATAA
CTTTTTAGCAAAACCTACACgtatttcaaactttaaaaatgGCTTCAGGG
AGTGGGTGTTGGATTGAAATAATCCTTCTGGagattttaaaaacctttcG
GCTATTGAGGATGGTGGTACACTAAAG Run BLAST on NCBI transcript from alignment at sc0000069:489760..490830+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006594 ID=TCONS_00006594|Name=TCONS_00006594|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000069:489760..490830+ (Clytia hemisphaerica)
CTGATATTTGCAACCCTTGCAAGGATCCATGTTGTAAAAGGAGATTCCAT
TTATTTTAAAAGTAAGTTATTGTTCAAAAACCATTccttaactttttttg
acttgagacatttttattttttaattctttaattaGCATAAACTTATTAT
GAAGTTATTCTCGCCAATTTATTGTACATATTTGAagattcaagaaatat
tttatgaaaatgattaaaaaaagtaGCTGCTGAAGTTTACTTTATGAAGA
TtgatttatttatgttttttgttttgtttttgtttttacatcGACAGCAC
TGCAACAACAAGTGGGCAGACAAAGCATGAAAATGTTACCTCCTCCTAGT
ATAACGGTAGACTGAAGTTCTAAAGCTGATCCAAGGATTGTCAAATGAAA
GTAATGTAAGTTTATTGCATGTTTTCCCTGAGTGCAACCTGAAGTGCATT
TATTTATGAATTTCAATtactttgaatttaaaaaattctgtaattttttt
ggaCCCTGGGCACAAGACAAGGGTACTTATGCAAGAATTGTAACCCAAAG
TATTTACAAAGCTTTCGGGAtttgatataaaaaaataatattttgccaTT
GCCCTTTTTTTAGGTGTGGAAACTTTTTGTAACCCAGACGCCTGTAACCC
TGAATTGCCAGTGGAATGGAGATTAAAGAGcaaacacaaagaaaaacatC
AAAGATGAATTTTGAGCATGATgtagtttatttatttatcaacATGACTA
AGGTGGATATGGTTAAGATTTTGAATTAACTTAATCTTAAGTTCTTAGTC
TCTTTCATAACTATTATAGATATGGTTTGTTAGATGGTTGTGGACCCGGC
AAGATTTATTTCACTAATTTGTAACACTCTGATAACCAAAGAACTTTCAC
GGGCAAGTATTCTTCTTATCTTCTGTATCAATTTGAGCGGATAACTTTTT
AGCAAAACCTACACgtatttcaaactttaaaaatgGCTTCAGGGAGTGGG
TGTTGGATTGAAATAATCCTTCTGGagattttaaaaacctttcGGCTATT
GAGGATGGTGGTACACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006594-exon-sc0000069-1491911889:489760..489820 | TCONS_00006594-exon-sc0000069-1491911889:489760..489820 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1510915933:489760..489820 | TCONS_00006594-exon-sc0000069-1510915933:489760..489820 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1575043694:489760..489820 | TCONS_00006594-exon-sc0000069-1575043694:489760..489820 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1491911889:490057..490164 | TCONS_00006594-exon-sc0000069-1491911889:490057..490164 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1510915933:490057..490164 | TCONS_00006594-exon-sc0000069-1510915933:490057..490164 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1575043694:490057..490164 | TCONS_00006594-exon-sc0000069-1575043694:490057..490164 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1491911889:490373..490830 | TCONS_00006594-exon-sc0000069-1491911889:490373..490830 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1510915933:490373..490830 | TCONS_00006594-exon-sc0000069-1510915933:490373..490830 | Clytia hemisphaerica | exon |
| TCONS_00006594-exon-sc0000069-1575043694:490373..490830 | TCONS_00006594-exon-sc0000069-1575043694:490373..490830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:489760..490830 + |
Blast
The following BLAST results are available for this feature:
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