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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006593 ID=TCONS_00006593|Name=TCONS_00006593|organism=Clytia hemisphaerica|type=transcript|length=470bp
AATGAAAGTAATGTGTGGAAACTTTTTGTAACCCAGACGCCTGTAACCCT
GAATTGCCAGTGGAATGGAGATTAAAGAGcaaacacaaagaaaaacatCA
AAGATGAATTTTGAGCATGATgtagtttatttatttatcaacATGACTAA
GGTGGATATGGTTAAGATTTTGAATTAACTTAATCTTAAGTTCTTAGTCT
CTTTCATAACTATTATAGATATGGTTTGTTAGATGGTTGTGGACCCGGCA
AGATTTATTTCACTAATTTGTAACACTCTGATAACCAAAGAACTTTCACG
GGCAAGTATTCTTCTTATCTTCTGTATCAATTTGAGCGGATAACTTTTTA
GCAAAACCTACACgtatttcaaactttaaaaatgGCTTCAGGGAGTGGGT
GTTGGATTGAAATAATCCTTCTGGagattttaaaaacctttcGGCTATTG
AGGATGGTGGTACACTAAAG Run BLAST on NCBI transcript from alignment at sc0000069:481822..490830+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006593 ID=TCONS_00006593|Name=TCONS_00006593|organism=Clytia hemisphaerica|type=transcript|length=9009bp|location=Sequence derived from alignment at sc0000069:481822..490830+ (Clytia hemisphaerica)
AATGAAAGTAATGTAAGTTTATTGCATGTTTTCCCTTAGTGCAACCTGAA
GTGCATTTATTTATCAATTTCAATtactttgaattaaaaaaattctgtaa
tttttttggaCCCTTGGCACAAGACAAGGGTACCTATGCAAGAATTGTAA
CCCAAAATATTTACAAAGCTTTCGGGATTTGATATAATATTTTGCTATTG
CCCTTTTTTTAGGTGTGGAGACTTTTTGTAACCCAGACGATTGTAACCCT
GAATTGCCAGTGGAATGGAGATTAAAGAGcaaacacaaagaaaaacatCA
AAGATGAATTTTGAGCATGATgtagtttatttatttatcaacATGACTAA
GGTGGATATGGTTAAGATTTTGAATCAACTTAATCTTAAGTTCTTAGTCC
CTTTCATAACTATTATAGATATGGTTTGTTAGATGGTTGTGGACCTGGCA
AGATTTATTTCACTATGTTGTAACACTCTGCATAACCGAAGAACTTTCAC
gggcaagtatttttttatcttcttatcaATTTGAGCGGTTAACTTTTTAG
CAAAACCTACATgtatttcaaactttaaaaatgaCTTCAGGGAGGGGGTG
TTTGATTGAAATAATCCTTCTGGagattttaaaaacctttcGGCTATATT
GAGGATGGTGGTACACTTGAAGAACCTTTAGATAAACTATTTCTAACTAT
ATAAGATCAGCTATTTAACCTAGCTTTTTAACTGAGCTTTTAATTATTTA
GAAATGCAAATAATTGATAGTAAAACAATGAAGACTTTGTTTAAGCTGAA
AAGATTAAGTTAATTAGTTAAGATACTTTTTAGGAGAGATAAGTTTTAAA
ATTCTAATTAGTAACTTTATAGACAAATAACTAATAGTATTGATTTTTTA
ATATAGCTATGACATatatcaaaacctaaagaatTTTGGAACAAATCATA
TTTAATAGTTACAGTTACTAAATTACATCCCTTCTTTTGTCACTTCTACA
CTTTGTACAACAGTCTCACATTTCTTCTATATATTTCCACACACGTTCTT
CGTGCAGGGTTCCAAGTGGTtgaagttttgatttttggatcATTCTAAAT
CTGCTGGGATCATTGCACACTTTATATTTTGAATATCTATTTCTACACTC
TTGGTCTTTATCTTCCTTTTGCGCCTTTTCCTTGGTNCATCTATTTCTTC
ACTCTTGGTCTTTATCTTCCTTTTGAGCCTTTCCTTGGTGTAAGATTTCC
TTTGTAGAATATGAGATATGCAGCACTGACAGGTATACAGGTATCAGAAT
TAAGGGATTCTGACACAAAGCAATTATTTTGTTCAGCTACAGTTACTAAA
TTACATCCCTTCTTTTGTCACTTCCACACTTTATACAAAAGTCTCACATT
TCTTCTATGTTTCCACACACGTTCTTCGTGCAGGGTTCCTAGTGGttgaa
gttttcattttttgatcaTTCTAAACCTGCTGGGATCATTGCACACTTTA
TATTTTGAATATCTATTTCTACACTCTTGGTCTTTATCTTCCTTTCGCGC
CTTTCCTTGGTGTAAGATTTCCTTTGTAGAATATGAGATATGCAGCACTG
ACAGGTATACAGGTATCAGAATTCAAGGATTCTGACacaaagaaattatt
ttgttcAGCTACAGTTACTAAATTACATCCCTTCTTTTGTCACTTCCACA
CTTTGTACAACAGTCTCACATTTCTTCTATATATTTCCACACACGTTCAT
CGTGCAGCGTTCCAAGTGGTtgaagttttgatttttggatcATTCTAAAT
CTGCTGGGATCACTGCACACTTTATATTTTGAATATCTATTCTACACTCT
TGGTCTTTATCTTCCTTTTGCGCCTTTTCCTTGGTGTAAGATTTCCTTTG
TAGAATAATGAGATATGCAGCACTGACAGGTATACAGGTATCAGAATTCA
AGGATTCTGACACAACGCAATTATTTTGTTCAGCTACAGTTACTAAATTA
TATCCCTTCTCTTGTCACTTCCACACTTTATACAAAAGTCTCACATTTCT
TCTATGTTTCCACACACGTTCTTCGTGCAGGGTTCCTAGTGGTtgaagtt
ttgatttttggatcATTCTAAATCTGCTGGGGTCATTGCACACTTTATAT
TTTGAATATCTATTTCTACACTCTTGGTCTTTATCTTCCTTTTGCGCCTT
TTCCTTGGTGTAAGATTTCCTTTGTAGAATAATGAGATATGCAGCACTGA
CAGGTATACAGGTATCAGAATTCAAGGATTCTGACACAACGCAATTATTT
TGTTCAGCTACAGTTACTAAATTATATCCCTTCTCTTGTCACTTCCACAC
TTTATACAGTCTCACATTTCTTCTATATATTTCCACACACGTTCTTCGTG
CAGGGTTCCAAGTGGTtgaagttttgatttttggatcATTCTAAATCTGC
TGGGATCATTGCACACTTTATATTTTGAATATCTATTTCTGCACTCTTGG
TCTTTATCTTCCTTTTTTGCCTTTTCTTGGTCTAAGGTTTCCTTTGCCAG
TTTTGCAGAATTATGGTGATTAAGTACTCCACTAACCTCAAAATCTTATT
ACCTAATTTGTGTAATCTTTTCGTgtctttcaaaaatcaattagcTCTAa
cattcattattttttcatacttCAGGCTGTCCTTTAAATTActaacttca
tttttttgtcaGTTCTGTTTTAAACACGACACTATATAGTAGCTCTTGCT
TGGATGTTCGTAGATAATATATACTACTTCACATTGAtatcaaaaagtat
ttctttcctAAGGAAATAATATATGGGATGACTCAAATTGATTGAGAAAT
TAATTCTTTTCCTGTTGAAATGATATAGTTTCAAATCCACGATTTTAATT
GACAGATATTCACTGATGGTTTGTATGAAATACAATGTCACTATCTATGC
GCAACTTTTTCACGAATTTTTGCTAATGTGATCAGCTTTTAGCCTTAGAC
TATggacttcaaaaataaaataatgaatttgCCTGTCATTATTATTTGAG
TAAAGTCTTTTTGCAGATCACATTTGCTGGGATGGATTCTTTTTTctagc
aaaaaaaagaaaaaatcagatTAAAACAAATGTTCCAAATCATTGGGGGT
AATAGAAAAGCTATAAACTGACATGTcacatttcttcttcttttgttttt
cttggcAAGCATTCACTAGCCCATTTACTTATTCATTTTTACTTATgggg
attttttttctttttttacatttGTTATTATTATACTAGGTTCTTTATTT
TGGGCCCACattttttaattatcattattattgttCTTTCACTGTGCTTG
CCAatcaaaaacaacagaaaataCGCTTATgtttcatttagtttttgcct
caaggctttcatttttttctttacaactTTTGCATGAGTTCCTTTAGCCT
CAACTAGCTAATGTAATTTCAACTTTCACATTCAGGAAAATCAATAAATT
TAATGGTTTGAACAGtgtaaattcataattttcaggttgcatatcaaaat
aataaaactttGTAAATTTTCTAATTCATCCAAATGGaaactttgaaaac
aaaaagatcATTTAATACAAAAGTTTTAATTCAAGAACAATCTATCAGAA
AGTccatctgaaaataaaaataggaAAGATAAGCAAAAGTAATGATGAAT
GAGGGCAACATGAAAAAACGTCATTTTGAGCCAATGTTAAAGTCAAAAAG
AGTTTACATCGCACAATTAGTTCTCATGCATtaattgttaaccggttact
ttttcgaagcgggctatacatggctttttgcgcaatgcaattggttcttt
tcgcatgacgacgggcctacattgtccagagttgcccgtcgttaggaaaa
ttcattgtgacgtcactttttcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNccctcggtcaacgcaacaacctcgcaa
gctcggtcgttacttgacctcgggcaatatttctcagtacagccctcact
aaccggtcattattgtattagtgtTTCACCACCTTTCTCTTTCTGTGCTT
CCTCTTTTTTCTCTGTTTTTAGAATCATCACAACAAAGAAACTGGTGAAC
ACCTACTGCCATCCTTATAAGCAATTAGCAAGTCACGCTTCGCATTCCAT
ATGTATGTCGTATTATGACTCAAAATGTAGACCATTTACTACAAAAACGT
TCAAGATATCGAATACCCGACTGCACCTAACAAATACTGAAAATCTCGTA
AAGATGGCTTGAATCAGGCAGACTGCAAGCATCTCGATTGATTGTAAGTA
TAGAGCTCCTTGTGTACTTTTTGAAATACAACGTTCTATTGGACTTTTTA
TTCGACATCTTCAGAGATTTGGATAGTACACCgccattttattttgtttc
aaaaggttattttttgaaatttgtattAATTTTTTCATGCTAAAATTACC
ATCagctcccagctggcacacaacgtttttctaatgttcacaacgtccat
ataacgttagatgaacgttgcaacaacgttgtgtgccagctctGGGCTTG
TATATTTTGTATACTTCAGTTTGCTGTATCGTTATGCAACGGGAATATGG
TGAAGCCTTCCATTGTCCGTTATTGATATTCGTTTGACCTCGAAGCCCAT
TCTCAAGACTACTTATCCGGCAAGTATATTTCATTCTTATTTAACATTAA
GTCAATTTTGCTCGAATTAGAACTATCTGTTTTTCgagaaaagaaaatct
aaaattcatgTGCTAAAGTGGAGATAGTGGTTAATACCTGCTATCTATTT
CTCTTGAATTGACTCGTGTGCTAAATTCTTCAAGTCTTTTCCTTCAAGgg
ttatttttaggcttttttggGCTTagcacttttttttgcttttaaccTAA
TTTTTCTCTTAAAGGTGTGAAAGTTTGGTTTGATAGGTTATCTTTCAAGT
TTTATGCGAaggaaacttttttcataaaagcctccttttcaaagtTCATT
TGTTTGGATTTCATTTAGAGTTGACACATGTTTGATTATGAGCGCAATCA
GATGGATTGTTCATCAAAGCATTCAATTGACTTTAATGCACAATTCAATC
TCATTGTACACTGTCAGGGGTTTAATTTGTACGAACTAAGTGAGGGGTAG
TGAGTTGTATGGGGCTGTGAGTGTGTGGGGGCTGTGAGTGTGTGGGGGTG
GTGTCTTGTGTGGGTATGAGATGGTATGAGTGCTAGAATCAAACATGTCA
ACGAAAAATCACCAAACATTCTAAGGTTTAGCCATGATTTATCGAACCAA
CTTTTACACCTTTTAGTGAAAGATTAGATAACAGCAAGTTTACAGGCTGT
TTTATAGCCTTCAAGTTTTACATCCAATTAAATCAAAGGGATAGATATCG
GTTACTAACCATACCTATTGCTAACTTCTCATTCAgctttagtttttttt
atgGTCTAAGCTTCCCAAAATATTACACAAATCTTTATGTTCTTTTCAGC
TCGATCAATTTACACATTCACTGTCAAAATTCGATTTCACATTGATCAAG
AAAACCTGGATTGATCCAACAACAAAGAATTGACATATAGTCCATTTATG
AGTTCTCGATCGAGATACGTGGTAACAGGTAAATTCGACTGAATACACCG
ATTCATATCATCCAGtcttaaaaaacaaatcttCTATTTTTTACCATATC
CACCTAGTCTTCGCTTAGGCTTATAATTTACACACAATTTTGTAAAGGTA
ACTTATATTAGCTAGCTTGTTTTTTTAGTGATTGTCAGAAATACCACCaa
tgaaaaagaaatgtttACATGTGTCTGTTTGATTCTATGGACAGTTTTTT
GATGTGGTCTTTATACTTCCAAAATTCCTAGCTAATTGTACTTAAAAAAC
TAAATTCTTAAttatttttgactgtttttcaTCTCATTCATCTGCGACAA
CCATTGGTAAAACTCAAAATCCTAAGTCAAAACAGATTCAAAATTTACAC
ATAggtctttttccttttttggctCAACTCTTAAGAACAACCCTAAATCG
TTTGATAAGTTTCCTTTCACTTTATATATGATTTGGTTTGGAGACTTCTT
CATTCTGGTTCTCTCATCTAGGTTTAATAACTTTTGTGAacatttatttt
gaattattttagctTTTGGCATGCAACAAATTATGAAATGCTAAATTGAA
GGAAAAAACACTAGTCTCGTTTTTTCTAGCTATTctcaatttaaaaagaa
atagaaCATGTTCAGTTTTTGACAAATTCTtaagtccattcgctttaagA
AAGACTGATGTGCGGCTCAAAATTGGGCCTTTGagatcggacccttacag
tgtagagAAACTNGAACTTAATAACGAAGATCTACCAAGACATGCAAATG
TCTCACGCGAGGTGAGACTGGATATAAGCGCTCTCAGTTTTTGGACTGCT
GGCCAAAgagcattttttgatgtgagGGTTTTCAACCCGTTTGTTCGAAG
GTACACCAATCCAAAAATTGAGAACTGCTTATGATCCAATGAAcgcgaaa
agaagagacaataTGGTGAACGTATTTTGCAAGCCGAAAATGGGACTTTT
TTTCCGCTTGTTTTTGCGGCAAATGGGGCGATGGGACGTGAATGTACGTT
ATTTTACAAGCGTCTAGCTGAAATGATAGCAGACAAAAGACATGAAACTT
TCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaaaaaaaaaaaaaaaaaaaaaagaaaatattgagtATTCCGGTAAT
GATTTTCTGTCAAAGCTATCTCAACCTATTCCGAGTTCTTCCGCTTTCAA
AACTTGATTATCCAGATCATGCGTTGATTTATAAGTTGGCGCGAAATCAG
ACATGTGGAAATCGCATCAGTACATCAGGCAGTACCCGCGCTGGCAAGAC
TAGTCTACACTAGTGGGTATTGCAAGGATTTATTTTGTCTGATATTTGCA
ACCCTTGCAAGGATCCATGTTGTAAAAGGAGATTCCATTTATTTTAAAAG
TAAGTTATTGTTCAAAAACCATTccttaactttttttgacttgagacatt
tttattttttaattctttaattaGCATAAACTTATTATGAAGTTATTCTC
GCCAATTTATTGTACATATTTGAagattcaagaaatattttatgaaaatg
attaaaaaaagtaGCTGCTGAAGTTTACTTTATGAAGATtgatttattta
tgttttttgttttgtttttgtttttacatcGACAGCACTGCAACAACAAG
TGGGCAGACAAAGCATGAAAATGTTACCTCCTCCTAGTATAACGGTAGAC
TGAAGTTCTAAAGCTGATCCAAGGATTGTCAAATGAAAGTAATGTAAGTT
TATTGCATGTTTTCCCTGAGTGCAACCTGAAGTGCATTTATTTATGAATT
TCAATtactttgaatttaaaaaattctgtaatttttttggaCCCTGGGCA
CAAGACAAGGGTACTTATGCAAGAATTGTAACCCAAAGTATTTACAAAGC
TTTCGGGAtttgatataaaaaaataatattttgccaTTGCCCTTTTTTTA
GGTGTGGAAACTTTTTGTAACCCAGACGCCTGTAACCCTGAATTGCCAGT
GGAATGGAGATTAAAGAGcaaacacaaagaaaaacatCAAAGATGAATTT
TGAGCATGATgtagtttatttatttatcaacATGACTAAGGTGGATATGG
TTAAGATTTTGAATTAACTTAATCTTAAGTTCTTAGTCTCTTTCATAACT
ATTATAGATATGGTTTGTTAGATGGTTGTGGACCCGGCAAGATTTATTTC
ACTAATTTGTAACACTCTGATAACCAAAGAACTTTCACGGGCAAGTATTC
TTCTTATCTTCTGTATCAATTTGAGCGGATAACTTTTTAGCAAAACCTAC
ACgtatttcaaactttaaaaatgGCTTCAGGGAGTGGGTGTTGGATTGAA
ATAATCCTTCTGGagattttaaaaacctttcGGCTATTGAGGATGGTGGT
ACACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006593-exon-sc0000069-1491911889:481822..481833 | TCONS_00006593-exon-sc0000069-1491911889:481822..481833 | Clytia hemisphaerica | exon |
| TCONS_00006593-exon-sc0000069-1510915933:481822..481833 | TCONS_00006593-exon-sc0000069-1510915933:481822..481833 | Clytia hemisphaerica | exon |
| TCONS_00006593-exon-sc0000069-1575043694:481822..481833 | TCONS_00006593-exon-sc0000069-1575043694:481822..481833 | Clytia hemisphaerica | exon |
| TCONS_00006593-exon-sc0000069-1491911889:490373..490830 | TCONS_00006593-exon-sc0000069-1491911889:490373..490830 | Clytia hemisphaerica | exon |
| TCONS_00006593-exon-sc0000069-1510915933:490373..490830 | TCONS_00006593-exon-sc0000069-1510915933:490373..490830 | Clytia hemisphaerica | exon |
| TCONS_00006593-exon-sc0000069-1575043694:490373..490830 | TCONS_00006593-exon-sc0000069-1575043694:490373..490830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:481822..490830 + |
Blast
The following BLAST results are available for this feature:
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