TCONS_00006591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006591
Unique NameTCONS_00006591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006591 ID=TCONS_00006591|Name=TCONS_00006591|organism=Clytia hemisphaerica|type=transcript|length=757bp
ATCCAGATCATGCGTTAATTTATAAATTGGCGCGAAATCAGACATGTGGA
AATCGCATCAGTACATCAGGCAGTACTCGTGCAGGCAAGACTGGTCTAGT
GGGAGACTGTATTGCAAGGATTTATTTTATCTGATATTTGCAACCCTTGC
AAGGATTCATGTTGTAAAAAGAGATTCCATTTATTTTAAAACACTGCAAC
AACAAGTGGGCAGACAAAGCATGAAAATGTTACCTCCTCCTAGTATAACG
GTAGACTGAAGTTCTAAAGCTGATCCAAGGATTGTCAAATGAAAGTAATG
TGTGGAAACTTTTTGTAACCCAGACGCCTGTAACCCTGAATTGCCAGTGG
AATGGAGATTAAAGAGcaaacacaaagaaaaacatCAAAGATGAATTTTG
AGCATGATgtagtttatttatttatcaacATGACTAAGGTGGATATGGTT
AAGATTTTGAATTAACTTAATCTTAAGTTCTTAGTCTCTTTCATAACTAT
TATAGATATGGTTTGTTAGATGGTTGTGGACCCGGCAAGATTTATTTCAC
TAATTTGTAACACTCTGATAACCAAAGAACTTTCACGGGCAAGTATTCTT
CTTATCTTCTGTATCAATTTGAGCGGATAACTTTTTAGCAAAACCTACAC
gtatttcaaactttaaaaatgGCTTCAGGGAGTGGGTGTTGGATTGAAAT
AATCCTTCTGGagattttaaaaacctttcGGCTATTGAGGATGGTGGTAC
ACTAAAG
Run BLAST on NCBI

transcript from alignment at sc0000069:479711..490830+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006591 ID=TCONS_00006591|Name=TCONS_00006591|organism=Clytia hemisphaerica|type=transcript|length=11120bp|location=Sequence derived from alignment at sc0000069:479711..490830+ (Clytia hemisphaerica)
ATCCAGATCATGCGTTAATTTATAAATTGGCGCGAAATCAGACATGTGGA
AATCGCATCAGTACATCAGGCAGTACTCGTGCAGGCAAGACTGGTCTAGT
GGGAGACTGTATTGCAAGGATTTATTTTATCTGATATTTGCAACCCTTGC
AAGGATTCATGTTGTAAAAAGAGATTCCATTTATTTTAAAAGTAAGTTAT
TGTTCAAAAACCATccttaactttttttgacttgagacatttttattttt
ttattctttaattAGCATAAACTTATTATGAAGTTATTCTCGCcaatgag
ctggagtttttacaagatacttcactaattggtcatttaaagtgataggg
atgacgcgttctttagtaAAAGTAATGAGATTCTTTCAtcgtcaatggaa
gatgtcttttaatCCTGATCCCACAAAACAAGCTGTGGAAGTTTACTTTT
CCAAAAGGCTCTTACCAGCTAATGCTCCTGTTTTATANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATTCTTTCATTACATCTTaatgaccaac
caaatcaaataagagcttgtaaaaactccagcttgtcccaatttATTGTA
CATAATTGAagattcaagaaatattttatgaaaatgattaaaaaaagtaG
CTGCTGAAGTTTATTTTATAAAGATtgatttatttatgttttttttgttt
ttgtttttacatcCACAGCACTGCAAAATGTGGGCAGACAAAGCATGAAA
ATGTTACCTCCTCCTGGTATAACGGTGGACTGAAGTTCTAAAGCTTATCC
AAGGATTATCAAATGAAAGTAATGTAAGTTTATTGCATGTTTTCCCTTAG
TGCAACCTGAAGTGCATTTATTTATCAATTTCAATtactttgaattaaaa
aaattctgtaatttttttggaCCCTTGGCACAAGACAAGGGTACCTATGC
AAGAATTGTAACCCAAAATATTTACAAAGCTTTCGGGATTTGATATAATA
TTTTGCTATTGCCCTTTTTTTAGGTGTGGAGACTTTTTGTAACCCAGACG
ATTGTAACCCTGAATTGCCAGTGGAATGGAGATTAAAGAGcaaacacaaa
gaaaaacatCAAAGATGAATTTTGAGCATGATgtagtttatttatttatc
aacATGACTAAGGTGGATATGGTTAAGATTTTGAATCAACTTAATCTTAA
GTTCTTAGTCCCTTTCATAACTATTATAGATATGGTTTGTTAGATGGTTG
TGGACCTGGCAAGATTTATTTCACTATGTTGTAACACTCTGCATAACCGA
AGAACTTTCACgggcaagtatttttttatcttcttatcaATTTGAGCGGT
TAACTTTTTAGCAAAACCTACATgtatttcaaactttaaaaatgaCTTCA
GGGAGGGGGTGTTTGATTGAAATAATCCTTCTGGagattttaaaaacctt
tcGGCTATATTGAGGATGGTGGTACACTTGAAGAACCTTTAGATAAACTA
TTTCTAACTATATAAGATCAGCTATTTAACCTAGCTTTTTAACTGAGCTT
TTAATTATTTAGAAATGCAAATAATTGATAGTAAAACAATGAAGACTTTG
TTTAAGCTGAAAAGATTAAGTTAATTAGTTAAGATACTTTTTAGGAGAGA
TAAGTTTTAAAATTCTAATTAGTAACTTTATAGACAAATAACTAATAGTA
TTGATTTTTTAATATAGCTATGACATatatcaaaacctaaagaatTTTGG
AACAAATCATATTTAATAGTTACAGTTACTAAATTACATCCCTTCTTTTG
TCACTTCTACACTTTGTACAACAGTCTCACATTTCTTCTATATATTTCCA
CACACGTTCTTCGTGCAGGGTTCCAAGTGGTtgaagttttgatttttgga
tcATTCTAAATCTGCTGGGATCATTGCACACTTTATATTTTGAATATCTA
TTTCTACACTCTTGGTCTTTATCTTCCTTTTGCGCCTTTTCCTTGGTNCA
TCTATTTCTTCACTCTTGGTCTTTATCTTCCTTTTGAGCCTTTCCTTGGT
GTAAGATTTCCTTTGTAGAATATGAGATATGCAGCACTGACAGGTATACA
GGTATCAGAATTAAGGGATTCTGACACAAAGCAATTATTTTGTTCAGCTA
CAGTTACTAAATTACATCCCTTCTTTTGTCACTTCCACACTTTATACAAA
AGTCTCACATTTCTTCTATGTTTCCACACACGTTCTTCGTGCAGGGTTCC
TAGTGGttgaagttttcattttttgatcaTTCTAAACCTGCTGGGATCAT
TGCACACTTTATATTTTGAATATCTATTTCTACACTCTTGGTCTTTATCT
TCCTTTCGCGCCTTTCCTTGGTGTAAGATTTCCTTTGTAGAATATGAGAT
ATGCAGCACTGACAGGTATACAGGTATCAGAATTCAAGGATTCTGACaca
aagaaattattttgttcAGCTACAGTTACTAAATTACATCCCTTCTTTTG
TCACTTCCACACTTTGTACAACAGTCTCACATTTCTTCTATATATTTCCA
CACACGTTCATCGTGCAGCGTTCCAAGTGGTtgaagttttgatttttgga
tcATTCTAAATCTGCTGGGATCACTGCACACTTTATATTTTGAATATCTA
TTCTACACTCTTGGTCTTTATCTTCCTTTTGCGCCTTTTCCTTGGTGTAA
GATTTCCTTTGTAGAATAATGAGATATGCAGCACTGACAGGTATACAGGT
ATCAGAATTCAAGGATTCTGACACAACGCAATTATTTTGTTCAGCTACAG
TTACTAAATTATATCCCTTCTCTTGTCACTTCCACACTTTATACAAAAGT
CTCACATTTCTTCTATGTTTCCACACACGTTCTTCGTGCAGGGTTCCTAG
TGGTtgaagttttgatttttggatcATTCTAAATCTGCTGGGGTCATTGC
ACACTTTATATTTTGAATATCTATTTCTACACTCTTGGTCTTTATCTTCC
TTTTGCGCCTTTTCCTTGGTGTAAGATTTCCTTTGTAGAATAATGAGATA
TGCAGCACTGACAGGTATACAGGTATCAGAATTCAAGGATTCTGACACAA
CGCAATTATTTTGTTCAGCTACAGTTACTAAATTATATCCCTTCTCTTGT
CACTTCCACACTTTATACAGTCTCACATTTCTTCTATATATTTCCACACA
CGTTCTTCGTGCAGGGTTCCAAGTGGTtgaagttttgatttttggatcAT
TCTAAATCTGCTGGGATCATTGCACACTTTATATTTTGAATATCTATTTC
TGCACTCTTGGTCTTTATCTTCCTTTTTTGCCTTTTCTTGGTCTAAGGTT
TCCTTTGCCAGTTTTGCAGAATTATGGTGATTAAGTACTCCACTAACCTC
AAAATCTTATTACCTAATTTGTGTAATCTTTTCGTgtctttcaaaaatca
attagcTCTAacattcattattttttcatacttCAGGCTGTCCTTTAAAT
TActaacttcatttttttgtcaGTTCTGTTTTAAACACGACACTATATAG
TAGCTCTTGCTTGGATGTTCGTAGATAATATATACTACTTCACATTGAta
tcaaaaagtatttctttcctAAGGAAATAATATATGGGATGACTCAAATT
GATTGAGAAATTAATTCTTTTCCTGTTGAAATGATATAGTTTCAAATCCA
CGATTTTAATTGACAGATATTCACTGATGGTTTGTATGAAATACAATGTC
ACTATCTATGCGCAACTTTTTCACGAATTTTTGCTAATGTGATCAGCTTT
TAGCCTTAGACTATggacttcaaaaataaaataatgaatttgCCTGTCAT
TATTATTTGAGTAAAGTCTTTTTGCAGATCACATTTGCTGGGATGGATTC
TTTTTTctagcaaaaaaaagaaaaaatcagatTAAAACAAATGTTCCAAA
TCATTGGGGGTAATAGAAAAGCTATAAACTGACATGTcacatttcttctt
cttttgtttttcttggcAAGCATTCACTAGCCCATTTACTTATTCATTTT
TACTTATggggattttttttctttttttacatttGTTATTATTATACTAG
GTTCTTTATTTTGGGCCCACattttttaattatcattattattgttCTTT
CACTGTGCTTGCCAatcaaaaacaacagaaaataCGCTTATgtttcattt
agtttttgcctcaaggctttcatttttttctttacaactTTTGCATGAGT
TCCTTTAGCCTCAACTAGCTAATGTAATTTCAACTTTCACATTCAGGAAA
ATCAATAAATTTAATGGTTTGAACAGtgtaaattcataattttcaggttg
catatcaaaataataaaactttGTAAATTTTCTAATTCATCCAAATGGaa
actttgaaaacaaaaagatcATTTAATACAAAAGTTTTAATTCAAGAACA
ATCTATCAGAAAGTccatctgaaaataaaaataggaAAGATAAGCAAAAG
TAATGATGAATGAGGGCAACATGAAAAAACGTCATTTTGAGCCAATGTTA
AAGTCAAAAAGAGTTTACATCGCACAATTAGTTCTCATGCATtaattgtt
aaccggttactttttcgaagcgggctatacatggctttttgcgcaatgca
attggttcttttcgcatgacgacgggcctacattgtccagagttgcccgt
cgttaggaaaattcattgtgacgtcactttttcNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccctcggtcaacgcaa
caacctcgcaagctcggtcgttacttgacctcgggcaatatttctcagta
cagccctcactaaccggtcattattgtattagtgtTTCACCACCTTTCTC
TTTCTGTGCTTCCTCTTTTTTCTCTGTTTTTAGAATCATCACAACAAAGA
AACTGGTGAACACCTACTGCCATCCTTATAAGCAATTAGCAAGTCACGCT
TCGCATTCCATATGTATGTCGTATTATGACTCAAAATGTAGACCATTTAC
TACAAAAACGTTCAAGATATCGAATACCCGACTGCACCTAACAAATACTG
AAAATCTCGTAAAGATGGCTTGAATCAGGCAGACTGCAAGCATCTCGATT
GATTGTAAGTATAGAGCTCCTTGTGTACTTTTTGAAATACAACGTTCTAT
TGGACTTTTTATTCGACATCTTCAGAGATTTGGATAGTACACCgccattt
tattttgtttcaaaaggttattttttgaaatttgtattAATTTTTTCATG
CTAAAATTACCATCagctcccagctggcacacaacgtttttctaatgttc
acaacgtccatataacgttagatgaacgttgcaacaacgttgtgtgccag
ctctGGGCTTGTATATTTTGTATACTTCAGTTTGCTGTATCGTTATGCAA
CGGGAATATGGTGAAGCCTTCCATTGTCCGTTATTGATATTCGTTTGACC
TCGAAGCCCATTCTCAAGACTACTTATCCGGCAAGTATATTTCATTCTTA
TTTAACATTAAGTCAATTTTGCTCGAATTAGAACTATCTGTTTTTCgaga
aaagaaaatctaaaattcatgTGCTAAAGTGGAGATAGTGGTTAATACCT
GCTATCTATTTCTCTTGAATTGACTCGTGTGCTAAATTCTTCAAGTCTTT
TCCTTCAAGggttatttttaggcttttttggGCTTagcacttttttttgc
ttttaaccTAATTTTTCTCTTAAAGGTGTGAAAGTTTGGTTTGATAGGTT
ATCTTTCAAGTTTTATGCGAaggaaacttttttcataaaagcctcctttt
caaagtTCATTTGTTTGGATTTCATTTAGAGTTGACACATGTTTGATTAT
GAGCGCAATCAGATGGATTGTTCATCAAAGCATTCAATTGACTTTAATGC
ACAATTCAATCTCATTGTACACTGTCAGGGGTTTAATTTGTACGAACTAA
GTGAGGGGTAGTGAGTTGTATGGGGCTGTGAGTGTGTGGGGGCTGTGAGT
GTGTGGGGGTGGTGTCTTGTGTGGGTATGAGATGGTATGAGTGCTAGAAT
CAAACATGTCAACGAAAAATCACCAAACATTCTAAGGTTTAGCCATGATT
TATCGAACCAACTTTTACACCTTTTAGTGAAAGATTAGATAACAGCAAGT
TTACAGGCTGTTTTATAGCCTTCAAGTTTTACATCCAATTAAATCAAAGG
GATAGATATCGGTTACTAACCATACCTATTGCTAACTTCTCATTCAgctt
tagttttttttatgGTCTAAGCTTCCCAAAATATTACACAAATCTTTATG
TTCTTTTCAGCTCGATCAATTTACACATTCACTGTCAAAATTCGATTTCA
CATTGATCAAGAAAACCTGGATTGATCCAACAACAAAGAATTGACATATA
GTCCATTTATGAGTTCTCGATCGAGATACGTGGTAACAGGTAAATTCGAC
TGAATACACCGATTCATATCATCCAGtcttaaaaaacaaatcttCTATTT
TTTACCATATCCACCTAGTCTTCGCTTAGGCTTATAATTTACACACAATT
TTGTAAAGGTAACTTATATTAGCTAGCTTGTTTTTTTAGTGATTGTCAGA
AATACCACCaatgaaaaagaaatgtttACATGTGTCTGTTTGATTCTATG
GACAGTTTTTTGATGTGGTCTTTATACTTCCAAAATTCCTAGCTAATTGT
ACTTAAAAAACTAAATTCTTAAttatttttgactgtttttcaTCTCATTC
ATCTGCGACAACCATTGGTAAAACTCAAAATCCTAAGTCAAAACAGATTC
AAAATTTACACATAggtctttttccttttttggctCAACTCTTAAGAACA
ACCCTAAATCGTTTGATAAGTTTCCTTTCACTTTATATATGATTTGGTTT
GGAGACTTCTTCATTCTGGTTCTCTCATCTAGGTTTAATAACTTTTGTGA
acatttattttgaattattttagctTTTGGCATGCAACAAATTATGAAAT
GCTAAATTGAAGGAAAAAACACTAGTCTCGTTTTTTCTAGCTATTctcaa
tttaaaaagaaatagaaCATGTTCAGTTTTTGACAAATTCTtaagtccat
tcgctttaagAAAGACTGATGTGCGGCTCAAAATTGGGCCTTTGagatcg
gacccttacagtgtagagAAACTNGAACTTAATAACGAAGATCTACCAAG
ACATGCAAATGTCTCACGCGAGGTGAGACTGGATATAAGCGCTCTCAGTT
TTTGGACTGCTGGCCAAAgagcattttttgatgtgagGGTTTTCAACCCG
TTTGTTCGAAGGTACACCAATCCAAAAATTGAGAACTGCTTATGATCCAA
TGAAcgcgaaaagaagagacaataTGGTGAACGTATTTTGCAAGCCGAAA
ATGGGACTTTTTTTCCGCTTGTTTTTGCGGCAAATGGGGCGATGGGACGT
GAATGTACGTTATTTTACAAGCGTCTAGCTGAAATGATAGCAGACAAAAG
ACATGAAACTTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaaaaaaaaaaaaaaaaaaaaagaaaatattgagt
ATTCCGGTAATGATTTTCTGTCAAAGCTATCTCAACCTATTCCGAGTTCT
TCCGCTTTCAAAACTTGATTATCCAGATCATGCGTTGATTTATAAGTTGG
CGCGAAATCAGACATGTGGAAATCGCATCAGTACATCAGGCAGTACCCGC
GCTGGCAAGACTAGTCTACACTAGTGGGTATTGCAAGGATTTATTTTGTC
TGATATTTGCAACCCTTGCAAGGATCCATGTTGTAAAAGGAGATTCCATT
TATTTTAAAAGTAAGTTATTGTTCAAAAACCATTccttaactttttttga
cttgagacatttttattttttaattctttaattaGCATAAACTTATTATG
AAGTTATTCTCGCCAATTTATTGTACATATTTGAagattcaagaaatatt
ttatgaaaatgattaaaaaaagtaGCTGCTGAAGTTTACTTTATGAAGAT
tgatttatttatgttttttgttttgtttttgtttttacatcGACAGCACT
GCAACAACAAGTGGGCAGACAAAGCATGAAAATGTTACCTCCTCCTAGTA
TAACGGTAGACTGAAGTTCTAAAGCTGATCCAAGGATTGTCAAATGAAAG
TAATGTAAGTTTATTGCATGTTTTCCCTGAGTGCAACCTGAAGTGCATTT
ATTTATGAATTTCAATtactttgaatttaaaaaattctgtaatttttttg
gaCCCTGGGCACAAGACAAGGGTACTTATGCAAGAATTGTAACCCAAAGT
ATTTACAAAGCTTTCGGGAtttgatataaaaaaataatattttgccaTTG
CCCTTTTTTTAGGTGTGGAAACTTTTTGTAACCCAGACGCCTGTAACCCT
GAATTGCCAGTGGAATGGAGATTAAAGAGcaaacacaaagaaaaacatCA
AAGATGAATTTTGAGCATGATgtagtttatttatttatcaacATGACTAA
GGTGGATATGGTTAAGATTTTGAATTAACTTAATCTTAAGTTCTTAGTCT
CTTTCATAACTATTATAGATATGGTTTGTTAGATGGTTGTGGACCCGGCA
AGATTTATTTCACTAATTTGTAACACTCTGATAACCAAAGAACTTTCACG
GGCAAGTATTCTTCTTATCTTCTGTATCAATTTGAGCGGATAACTTTTTA
GCAAAACCTACACgtatttcaaactttaaaaatgGCTTCAGGGAGTGGGT
GTTGGATTGAAATAATCCTTCTGGagattttaaaaacctttcGGCTATTG
AGGATGGTGGTACACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003726XLOC_003726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006591-exon-sc0000069-1491911889:479711..479901TCONS_00006591-exon-sc0000069-1491911889:479711..479901Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1510915933:479711..479901TCONS_00006591-exon-sc0000069-1510915933:479711..479901Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1575043694:479711..479901TCONS_00006591-exon-sc0000069-1575043694:479711..479901Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1491911889:490057..490164TCONS_00006591-exon-sc0000069-1491911889:490057..490164Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1510915933:490057..490164TCONS_00006591-exon-sc0000069-1510915933:490057..490164Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1575043694:490057..490164TCONS_00006591-exon-sc0000069-1575043694:490057..490164Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1491911889:490373..490830TCONS_00006591-exon-sc0000069-1491911889:490373..490830Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1510915933:490373..490830TCONS_00006591-exon-sc0000069-1510915933:490373..490830Clytia hemisphaericaexon
TCONS_00006591-exon-sc0000069-1575043694:490373..490830TCONS_00006591-exon-sc0000069-1575043694:490373..490830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:479711..490830 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.7716	18.2066	12.4959	10.9473	0.523836	0.620914	0	0.311691	0.200775	0.202727	0	0.12935	0.0430568	0.402434	0.0367617	0	0.194402	0.0498138	0	0	0	0	5.00527	6.00032	0.293007	0.24814	0.266316	0.284219	0.947522	1.3467
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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