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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006568 ID=TCONS_00006568|Name=TCONS_00006568|organism=Clytia hemisphaerica|type=transcript|length=7113bpRun BLAST on NCBI transcript from alignment at sc0000069:131483..242363+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006568 ID=TCONS_00006568|Name=TCONS_00006568|organism=Clytia hemisphaerica|type=transcript|length=110881bp|location=Sequence derived from alignment at sc0000069:131483..242363+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006568 vs. Swiss-Prot (Human)
Match: CAC1B (Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1) HSP 1 Score: 639.802 bits (1649), Expect = 0.000e+0 Identity = 382/803 (47.57%), Postives = 538/803 (67.00%), Query Frame = 1
Query: 2986 VINTRSLFLFPPSSRIRTWCHYIVNIKYFERLMLFFIVLSTMCLAIEDPLNTKATKNKVIYYLDVXXXXXXXXXXXXXXVDQGAVLHKGSYLRDWWNVIDTTVVACNIAATVLTLDSNETVKKSIGNTPLQAMRIMRVFRSLRVVNKIKELKLVCQCVVFSLKRTFNIIIIIVLCLFMFAVIGVNLFNGKFQSCNDVTKMTKAECQGKYYHIEDPANRPDDAMVIDRVWTNYDFNFDNVGLAMLTLFSCGSGEGWPVVMEKSMDATEVDFGPIPNNRMQMALXXXXXXXXXXXXXLNIFVALIIVTFQEQGEKEITGSELDKNQRACLQFVLNAKPRQRFMPHDQSGFSFKVWRVVDSKPFEIIIMVMIALNAIGLMLTFDDQSEEYGEILEKINLAFTFIFTLEAILKLMAYK-FNYFRDSWNVLDFCIVFITLVGAIINITKQEFA-----IDPSXXXXXXXXXXXXXXXQGYNIRILLWTFLQSLKGLPYVFLLIVMLFFIYAVIGVQLFGKIILDDRRKINEYNNFQSFQEALCVLFRCGTGETWHLVMLDCFDNAPCYNNPNE-KCGSTLAAVIXXXXXXXXXXXXXXXXXXXXIMDNFDYLTRDESILGPHHMDEFVRVWSEYDPSAAGRIPHEDVYQLMCDMQPPVGFGKKCPKFLAYKRLMKLNMPISG-DNTVLFTPTLFALVRTSL--GMTP-GDKECFRDSSFRKIIKRTWPNTTQKTLDILIPEQTVLSGQQITIGKIYAAKLIYESFKEIKRRKNCTLPQFEQFELNNQHKRGNSFFRKIKGVLRTSSQP 5361
++ S+F P++ +R +CHYIV ++YFE ++L I LS++ LA EDP+ T + +N + YLD F +FTFE+ IK++D G +LH G+Y RD WN++D VV+ + A + + + NT ++++R++RV R L+ + ++ +LK V CVV SLK NI+I+ +L +F+FAVI V LF GKF C D +K + +C+G+Y E ++ R W YDF++DNV A+LTLF+ +GEGWP+V++ S+DAT + GP P RM+++++YV + VV+ FFF+NIFVALII+TFQEQG+K ++ L+KN+RAC+ F ++AKP R+MP ++ F +K W V S PFE IM MIALN + LM+ F D EY +L+ +N+ FT +F++E +LK++A+ NYFRD+WNV D F+T++G+I +I E A I+ SF RLFRA RL+KLLRQGY IRILLWTF+QS K LPYV LLI MLFFIYA+IG+Q+FG I LDD IN +NNF++F +AL +LFR TGE WH +ML C N C N +CGS A YFV+F FL +FL+LNLFVAVIMDNF+YLTRD SILGPHH+DEF+RVW+EYDP+A GRI + D+++++ M PP+G GKKCP +AYKRL+++NMPIS D TV FT TL AL+RT+L + P G K+ D+ RK I W N QKTLD+L+P ++T+GK+YAA +I++ +K+ K ++ Q +Q S F +K L +QP
Sbjct: 1124 IVPYSSMFCLSPTNLLRRFCHYIVTMRYFEVVILVVIALSSIALAAEDPVRTDSPRNNALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSGSKGKDI-----NT-IKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELERDCRGQYLDYEK-----EEVEAQPRQWKKYDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYEEQGPSPGYRMELSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISAKPLTRYMPQNRQSFQYKTWTFVVSPPFEYFIMAMIALNTVVLMMKFYDAPYEYELMLKCLNIVFTSMFSMECVLKIIAFGVLNYFRDAWNVFD----FVTVLGSITDILVTEIAETNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDDTSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNQACDEQANATECGSDF-AYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMPISNEDMTVHFTSTLMALIRTALEIKLAPAGTKQHQCDAELRKEISVVWANLPQKTLDLLVPPH---KPDEMTVGKVYAALMIFDFYKQNKTTRD----QMQQAPGGLSQMGPVSLFHPLKATLE-QTQP 1902 HSP 2 Score: 596.66 bits (1537), Expect = 1.282e-174 Identity = 333/675 (49.33%), Postives = 461/675 (68.30%), Query Frame = 1
Query: 340 RSLFIFSEENIIRKVCRKITGNKIFDYFMLITIMANCIVLMAAEPLPENDTVELNKKLDQSDKVFVAIFIFEAILRIIANGFVIGQDAYLKSGWNILDFIVVISGAVHIITTFKSDPSSNKQTELIKALRAVRVLRPLKLVSGVPSLQVLMKSLIRAMVPLLQILLLVSFVIIIYSIVGLELLCGRFHYACFNATTQKLVVPISILKVRPCDPTGWGRKCNDGEICRRAKPHEWSGPNDGITSFDNMFLSMLTIFQCITLEGWSDILYYSLDSRDNSFQLIQWSAFILLIIVGSFFMLNLMLGVLSGEFAKERERVENRKNFLKLRKQRQIERSVDHYLHWISKAXXXXXXXXXXXXXXXXN----RCSPSGERRTSHYHHH------SELAXXXXXXXXXXXXXG-----NIFKRLERKFRFFIRRHLIKSKAFYWLVLILVLLNTVSMSLTKYNQQPDVKEVLDYLELVFTTLFFIEMILRMYGLGLRGYFRSAFNKYDFVVVWLSIADLIQTRIQNTSSIGISVLRSVRLLRIFKVTRFWSSMQNVVSSLMNSMRXXXXXXXXXXXXXXXXXXXGMQLFGGSFQTSYSGTSRTNFNSFGKAMLAVFQIMSCEDWNSIMYQGIKAYGGPKSFYGLLVSLYFVALVIVGNYTLLNVFLAIAVDNLANAQVLTRD 2319
RSLF+FSE+N++RK ++IT F+Y +L TI+ANCIVL + LP+ D ++++LD ++ F+ IF FEA ++IIA GFV + +YL++GWN++DF+VV++G I+ T +D ++ LRAVRVLRPLKLVSG+PSLQV++KS+++AMVPLLQI LL+ F I++++I+GLE G+FH ACF +T P+ PC R C CR W GPN GIT+FDN+ ++LT+FQCIT+EGW+DILY + D+ N++ W FI LII+GSFFMLNL+LGVLSGEFAKERERVENR+ FLKLR+Q+QIER ++ YL WI KAE+++ ++ E + + + + R H ++L S + G + F+R E+ FRFFIRR ++K+++FYW+VL +V LNT+ +++ YNQ + L + E VF LF EM L+MYGLG R YFRS+FN +DF V+ S+ +++ I+ SS GISVLR++RLLRIFKVT++WSS++N+V SL+NSM+SI+SL+ LL LFI +FALLGMQLFGG F T TNF++F A+L VFQI++ EDWN++MY GI++ GG G+ S YF+ L + GNYTLLNVFLAIAVDNLANAQ LT+D
Sbjct: 73 RSLFVFSEDNVVRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTG---ILATAGTDFD-------LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKFHKACFPNSTD--AEPVGDF---PCGKEAPARLCEGDTECREY----WPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGNTW---NWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENRRAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDRNAEEKSPLDVLKRAATKKSRNDLIHAEEGEDRFADLCAVGSPFARASLKSGKTESSSYFRRKEKMFRFFIRR-MVKAQSFYWVVLCVVALNTLCVAMVHYNQPRRLTTTLYFAEFVFLGLFLTEMSLKMYGLGPRSYFRSSFNCFDFGVIVGSVFEVVWAAIKPGSSFGISVLRALRLLRIFKVTKYWSSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFQ-DETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVSK--GMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKD 721 HSP 3 Score: 129.413 bits (324), Expect = 1.925e-29 Identity = 82/274 (29.93%), Postives = 143/274 (52.19%), Query Frame = 1
Query: 337 YRSLFIFSEENIIRKVCRKITGNKIFDYFMLITIMANCIVLMAAEPLPENDTVELNKKLDQSDKVFVAIFIFEAILRIIANGFVIGQDAYLKSGWNILDFIVVISGAVHIITTFKSDPSSNKQTELIKALRAVRVLRPLKLVSGVPSLQVLMKSLIRAMVPLLQILLLVSFVIIIYSIVGLELLCGRFHYACFNATTQKLVVPISILKVRPCDPTGWGRKCNDGEICRRAKPHEWSGPNDGITSFDNMFLSMLTIFQCITLEGWSDILYYSLDS 1158
Y S+F S N++R+ C I + F+ +L+ I + I L A +P+ D+ N L D +F +F FE ++++I G ++ AY + WNILDFIVV SGA + F S K IK+LR +RVLRPLK + +P L+ + ++ ++ +L IL++ + I++++ ++L G+F Y C + + + R C G+ + + A+P +W + +DN+ ++LT+F T EGW +L +S+D+
Sbjct: 1127 YSSMFCLSPTNLLRRFCHYIVTMRYFEVVILVVIALSSIALAAEDPV-RTDSPR-NNALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGAYFRDLWNILDFIVV-SGA---LVAFAFSGSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFY-CTDESKEL---------ERDCR----GQYLDYEKEEVEAQPRQWKKYD---FHYDNVLWALLTLFTVSTGEGWPMVLKHSVDA 1377 HSP 4 Score: 107.071 bits (266), Expect = 1.043e-22 Identity = 87/269 (32.34%), Postives = 137/269 (50.93%), Query Frame = 1
Query: 2998 RSLFLFPPSSRIRTWCHYIVNIKYFERLMLFFIVLSTMCLAIED--PLNTKATKNKVIYYLDVXXXXXXXXXXXXXXVDQGAVLHKGSYLRDWWNVIDTTVVACNIAATVLTLDSNETVKKSIGNTPLQAMRIMRVFRSLRVVNKIKELKLVCQCVVFSLKRTFNIIIIIVLCLFMFAVIGVNLFNGKF-QSCNDVTKMTKAECQGKY-YHIEDPANRPDDAMVIDRVWTNYDF---NFDNVGLAMLTLFSCGSGEGWPVVMEKSMDAT 3783
RSLF+F + +R + I FE ++L I+ + + LA+E P K ++ + + FI IF FE IKI+ G V HKGSYLR+ WNV+D VV I AT T + L+ +R +RV R L++V+ I L++V + ++ ++ I +++ + MFA+IG+ + GKF ++C T AE G + E PA + W +F NFDN+ A+LT+F C + EGW ++ + DA
Sbjct: 73 RSLFVFSEDNVVRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGT------------DFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKFHKAC--FPNSTDAEPVGDFPCGKEAPARLCEGDTECREYWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAA 327 HSP 5 Score: 105.916 bits (263), Expect = 2.499e-22 Identity = 74/254 (29.13%), Postives = 140/254 (55.12%), Query Frame = 1
Query: 1579 LIKSKAFYWLVLILVLLNTVSMSLTKYNQQPDVKEVLDYLELVFTTLFFIEMILRMYGLGLRGYFRSAFNKYDFVVVWLSIADLIQTRIQNTSS-IGISVLRSVRLLRIFKVTRFWSSMQNVVSSLMNSMRXXXXXXXXXXXXXXXXXXXGMQLFGG-SFQTSYSGTSRTNFNSFGKAMLAVFQIMSCEDWNSIMY-----QGIKAYGGPKSFYGLLVSLYFVALVIVGNYTLLNVFLAIAVDNLANAQVLTRD 2319
+ S F + ++ ++ LNTV + + Y+ + + +L L +VFT++F +E +L++ G+ YFR A+N +DFV V SI D++ T I T++ I +S LR R R+ K+ R +++ ++ + + S +++ + LL+ + FI+A++GMQ+FG + S NF +F +A++ +F+ + E W+ IM Q YFV+ + + ++ +LN+F+A+ +DN + LTRD
Sbjct: 1467 FVVSPPFEYFIMAMIALNTVVLMMKFYDAPYEYELMLKCLNIVFTSMFSMECVLKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIAETNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDDTSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNQACDEQANATECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNF---EYLTRD 1717 The following BLAST results are available for this feature:
BLAST of TCONS_00006568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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