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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006563 ID=TCONS_00006563|Name=TCONS_00006563|organism=Clytia hemisphaerica|type=transcript|length=1684bpRun BLAST on NCBI protein sequence of TCONS_00006563-protein >TCONS_00006563-protein ID=TCONS_00006563-protein|Name=TCONS_00006563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp MLTLTLFLLNTFVAFGSSGKVGDNCNTCRDIVKNFKKGLDKTAKDHFGGGRun BLAST on NCBI transcript from alignment at sc0000069:34936..43758+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006563 ID=TCONS_00006563|Name=TCONS_00006563|organism=Clytia hemisphaerica|type=transcript|length=8823bp|location=Sequence derived from alignment at sc0000069:34936..43758+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000069:34936..43758+ >TCONS_00006563 ID=TCONS_00006563|Name=TCONS_00006563|organism=Clytia hemisphaerica|type=CDS|length=23616bp|location=Sequence derived from alignment at sc0000069:34936..43758+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006563 vs. Swiss-Prot (Human)
Match: CREL1 (Cysteine-rich with EGF-like domain protein 1 OS=Homo sapiens GN=CRELD1 PE=1 SV=3) HSP 1 Score: 188.734 bits (478), Expect = 3.425e-53 Identity = 120/292 (41.10%), Postives = 175/292 (59.93%), Query Frame = 3
Query: 165 CNTCRDIVKNFKKGLDKTAKDHFGGGDTAWEESRLGSFARSETRLLEILEGACEGAAKESRCHAIVXXXXXXXXXXWFNKHKELDQLEKYLCIDTMQACCPEGQYGKECKDCPGGSKSPCNGHGTCKGSGTREGNGKCKCDDAYQGDLCDECSEKYYK-DTNGSCLAXXX--XXXXXXXXGTNKGCDSCKEGYVQDEEQACVDKNEC-DEDDTCVEGKFCVNSKGSYECKDCHASCEGGCTEASRFNCVQCKSGWKAIEGQQGCEDVNECEGEHGCSAGTYCKNTDGKHECL 1028
C+TCR +V +F KGL++T +D+FGGG+TAWEE L + SETRL+E+LEG C + + CH ++E EE +E +WF+K +E L ++LC D+++ CCP G +G C CPGG++ PC G+G C+G GTR G+G C C Y G+ C +C Y++ + N S L C + CS C CK+G+ + CVD +EC E C +FCVN++GSYEC+DC +C GC A C +C G++ + + C DV+ECE E C+NT+G + C+
Sbjct: 46 CHTCRGLVDSFNKGLERTIRDNFGGGNTAWEEENLSKYKDSETRLVEVLEGVC--SKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPAGTFGPSCLPCPGGTERPCGGYGQCEGEGTRGGSGHCDCQAGYGGEACGQCGLGYFEAERNASHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLK-CVDIDECGTEGANCGADQFCVNTEGSYECRDCAKACL-GCMGAGPGRCKKCSPGYQQVGSK--CLDVDECETEVCPGENKQCENTEGGYRCI 331 HSP 2 Score: 86.6557 bits (213), Expect = 5.135e-18 Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 3
Query: 978 CSAGTYCKNTDGKHE-CLSCHSSCSTEGCTGEGPDKCLVCSNGWEMNSEEGTGCVDVDQCKTKEVQCKHGEVCVNSEGPDKCEACHETCKECVGTEAGNCLSCYPGFALIDSKCKDINECSNDPCNEKTENCNNTPGSYSCKCKKGW 1415
C G + + H C +C C+ C+G CL C GW ++ + CVD+D+C T+ C + CVN+EG +C C + C C+G G C C PG+ + SKC D++EC + C + + C NT G Y C C +G+
Sbjct: 195 CGLGYFEAERNASHLVCSACFGPCAR--CSGPEESNCLQCKKGWALHHLK---CVDIDECGTEGANCGADQFCVNTEGSYECRDCAKACLGCMGAGPGRCKKCSPGYQQVGSKCLDVDECETEVCPGENKQCENTEGGYRCICAEGY 336 The following BLAST results are available for this feature:
BLAST of TCONS_00006563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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