TCONS_00006562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006562
Unique NameTCONS_00006562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006562 ID=TCONS_00006562|Name=TCONS_00006562|organism=Clytia hemisphaerica|type=transcript|length=1733bp
ggaaaatatttcaaaatcaatttctccTTTTTCAGGATGAATTTAAATAA
ATAAtgaccaaaattaaaaataattgaaattgaagCACTAAAATGTTGAC
ACTTACTTTATTCCTCCTCAACACTTTCGTTGCATTTGGAAGCTCTGGAA
AAGTAGGGGACAACTGCAACACTTGCAGAGATATTGTCAAGAACTTCAAA
AAGGGTTTAGATAAGACAGCCAAGGACCATTTTGGTGGCGGCGACACAGC
ATGGGAAGAATCAAGACTTGGAAGTTTTGCTAGAAGTGAAACAAGGCTTT
TGGAAATCTTGGAAGGTGCTTGCGAAGGAGCAGCTAAAGAgTCGAGATGC
CATGCCATAGTAGAAGAATACGAAGAGAAAATTGAAGAATATTGGTTCAA
CAAACATAAAGAGTTGGACCAACTAGAGAAATATTTATGTATAGACACCA
TGCAAGcatGCTGTCCGGAAGGCCAATACGGAAAGGAATGCAAAGATTGT
CCTGGTGGATCGAAGTCACCTTGCAACGGTCATGGCACATGTAAGGGTTC
TGGCACACGTGAGGGAAATGGAAAATGTAAATGTGACGACGCATACCAAG
GTGATCTGTGTGATGAATGCagtgaaaaatattataaagaCACAAATGGC
TCTTGTTTAGCGTGTGACGAGTCGTGTGAATCTTCATGTAGCGATGGTAC
GAATAAAGGATGTGATTCTTGTAAAGAAGGTTACGTACAAGACGAAGAGC
AAGCTTGTGTTGACAAGAATGAATGCGATGAAGACGACACATGTGTCGAA
GGAAAATTTTGCGTCAATTCTAAAGGATCATATGAATGCAAAGATTGTCA
CGCATCCTGTGAGGGTGGATGTACTGAAGCTAGTCGTTTCAATTGTGTAC
AATGCAAAAGTGGATGGAAAGCTATAGAAGGTCAACAAGGATGTGAAGAC
GTCAACGAATGTGAAGGAGAACACGGATGCAGTGCTGGTACATACTGTAA
AAATACTGATGGTAAACACGAATGTTTATCTTGTCATTCTTCGTGCTCCA
CTGAAGGTTGTACAGGTGAAGGTCCAGACAAATGTTTAGTCTGTAGCAAT
GGATGGGAGATGAACAGTGAGGAAGGTACAGGCTGTGTTGATGTTGACCA
ATGCAAAACGAAAGAAGTGCAATGTAAACATGGGGAAGTTTGCGTTAATA
GTGAAGGCCCTGATAAATGTGAAGCCTGTCATGAAACGTGTAAAGAATGT
GTTGGAACAGAGGCTGGTAATTGTCTCAGTTGTTATCCAGGCTTCGCACT
CATAGATTCCAAATGTAAAGATATAAACGAATGTTCGAACGACCCTTGTA
ATGAAAAGACGGAGAACTGCAACAACACTCCTGGCTCATATTCCTGCAAA
TGTAAAAAAGGCTGGGTACGAACAAAACAGGGTGActgcaaaaagaagaa
aacaaaatcaaagaagaaaaataaaaaaggtacGAAGAAAGAAAAATCGT
GGAAAGATGATCTATACGATGATATTATGTCAGGGAAAGCGTTCGAAAAG
GAGGAAAATTTCCGTAAATTTATGTACGGTCATGTTGTAGTGGCTGCATT
CTTGATGATCATGTATCGCTACAGGTGTTATAATTTGTTAGCACTCTCTG
TGGGTTGTTATGCAGTTGTTGCTAGTTATGTTTATACTAGACATgggaag
aatattttttgatgcATTGCCTGCCATTGGAAG
Run BLAST on NCBI

transcript from alignment at sc0000069:34936..42770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006562 ID=TCONS_00006562|Name=TCONS_00006562|organism=Clytia hemisphaerica|type=transcript|length=7835bp|location=Sequence derived from alignment at sc0000069:34936..42770+ (Clytia hemisphaerica)
ggaaaatatttcaaaatcaatttctccTTTTTCAGGATGAATTTAAATAA ATAAtgaccaaaattaaaaataattgaaattgaagCACTAAAATGTTGAC ACTTACTTTATTCCTCCTCAACACTTTCGTTGCATTTGGAAGCTCTGGAA AAGTAGGGGACAACTGCAACACTTGCAGAGATATTGTCAAGAACTTCAAA AAGGTAATTGTGTTCAATTAGCAAGTCTTACGTGAAAATATACAATGTCA TAATTACTCTTTACAGCCTTAGTTTTATCATATATTCCTAATGTTGATCT TTCCGTCTGTCATTATTGATACATATAAATCCTTATATACTTATTAATAT GTGGAATTAACAATCAtcataattttcttttattgaCTTTTGTTTTTAGG GTTTAGATAAGACAGCCAAGGACCATTTTGGTGGCGGCGACACAGCATGG GAAGAATCAAGACTTGGAAGTTTTGCTAGAAGGTAACTGTCAAACTCTTT TAGAAAGGTGGActctcaagttttttttttttttttatagattttgtctt tttgaccCTGAAAATAATTACTTCTATCATTGTCACTATAATCTGTATTG AGATTTCCCTTTCTGGTACTTTATGTAGTGAAACAAGGCTTTTGGAAATC TTGGAAGGTGCTTGCGAAGGAGCAGCTAAAGAggtaattttttgattttt tttaaaaggaaGGAAACACAAGGAGTTTTCTACTacatttttctgaaaac ctAGTAAACTTTTCATGTGACTGTTTAAACTAACAGTAATTTAGGATGTT TCAAAGGCTCAAAGTTGTGATTATTGATATTGAATACCTATAATTTTACT TTAGTCGAGATGCCATGCCATAGTAGAAGAATACGAAGAGAAAATTGAAG AATATTGGTTCAACAAGTGAGTGGTGCCTTCTACTCATCTTTTAAGAAGG TTATTATTGTGTGTGTGTTGTATTAAGGGAAACATAATTACAATGGAGTC Tccgtagcctgggaatccaagcgttaaactttttcatagtctagtttatg atatttttgctgctggtttaaggcttggcgcaggtaactcgcctgcaggg acatttttccctgcaatgcaggttcggcctgattggccagcttttggcgt attacttagcagtactttcgcgcgcattttgataatttcgatgcgtgcgg ataatttatggaaaaagctgactcggcagaaaaaaggaaaacaaatgaaa atgaaaacatagattcatttcgaaacaaaatggctgttggctggaagtct aaatacatgtggctgatgttttgatgtggtttttagtagttttgaaagtc tttagagcttgtgaaagaatggtaagttgattatgtgtgtttgcctgggt ttccaaagttcagcaagtctgtcaacaagggttcacacacaaaCTGTTtt taacattctgtgtcagactaatctacctgcaccaagctctataattttag aactttgtgaggtgaggtattttttgttttttttcaaagattatgagctt ggattcccaggccagagtctccgtaactcgaacacgcacaggGAACATAA ATNTTcaaagattatgagcttggattcccaggccagagtctccgtaactc gaacacgcacaggGAACATAAATTTGCCAGAGCTATGAATTAAGAAtttt aaggcattgttaactaaagtgaccataaaacttgttgttcgagttaagga gacattcgagttatagacgTTCGAGTTAAAGTGACTCCAATGTACACTGC TACTAAACCTCTTCGAAATACTAAGTGTGCAGAAAATAGGTTAGCCTATT TCAAGTGAATTCTTTTGCGTTCTTTTAgtttttaaaatagaatttCAGAA GTTTGACTTTCAAAAGGTAACACACCAGGTATTTCTTGAATGATATCACT GTTGTTCTcctttatcttctttttttttaccctTGTGATTGGAACGGAAA GTTTCACAGGAACtgtgaaaactttttttatttctctgtTTTAGACATAA AGAGTTGGACCAACTAGAGAAATATTTATGTATAGACACCATGCAAGGTA TACACTAACCTTTTACATGCTAGCTTTAATCCTCTTACAAAGTTAAAGCA ACCTGCTAAAATGCCATAGTATTCAATTTCCCCCATTCGGAAGCTcagta ggctacgtcatatcttccttcgtttcgagcgtaaaactcctactcttcgg gctatgagcactcctcttgttttgaatattgaaattctctaGATNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctagtggccgcct atagcagtgcctatagaccaagagtaaggcctaaaagcctggatctgtct attgtgtagactagaagCTCAGGAGACATtgtaaagaaacaaaaaaaaca acagcaaatctaacaaaaacaaatcaattcGAAAAAAGCACCTCCTGGAT ATTTTGATTCCATTATCAAAGTATTCATTCCCCAGCTGCTAAAAGTcgtt tcattaaatttttttcattttagcatGCTGTCCGGAAGGCCAATACGGAA AGGAATGCAAAGGTatgttctcattttcatttgaataTGCAAAGTCATGA CACTTACCTAGTTTTAGTATTGGCTCACTTGAAAAGTTAATAAAATATAA TAGTGATTTTTTCTAACTGAATAATAAGttttaagtttgttttttttcga tttcctTTTTGTTCAGATTGTCCTGGTGGATCGAAGTCACCTTGCAACGG TCATGGCACATGTAAGGTCGGTTTTcgaaaatcaaacttttttatttcat cgCGTGGGAATCTCTAAATGGGAAAGTTTCCTGGCTGTCCAAAGTCGAAG TGGCCTATCAATTTTTTCGTAGTTATAAACGCTacttaaattttcattta tctGAAGGTAAAGATGATAAAAACCACTTCATTCATATCGCTCAATGCTA AAGTTTGAGTGTATAATCCGCCTATTTTAATCATTCTTTCTAAAAGCATC CGGTTTATACCACTTTAAATCAAATAGTCAGGAGTTACGACCTATAGTCT GAGACTGAGTCTGagtattttggcttgttttggacgcatatacgcgtccc tcgtggtctaagggttaattatattttattttatttttgttgtagGGTTC TGGCACACGTGAGGGAAATGGAAAATGTAAATGTGACGACGCATACCAAG GTGATCTGTGTGATGAATGCagtgaaaaatattataaagaCACAAATGGC TCTTGTTTAGGTAAGTTTCACTTGTAAAATATACTCCTCACGAGATGCAT GTAATAAGATAAGACGATAATCGTAGAGAAACTGAAGTANCCTCACGAGA TGCATGTAATAAGATAAGGTAATAATCGTAGAGAAACTGAAGTAATCACT ATTACAACGTCTTTTTATCAGCTCTTTCGGAATAGTGTTTTGATCGTAGA TACGTTGCAAACGAGATCTAATTTCTTTCATGTATCTCATGAAAAACATA CTTCGGACTGCTTCGGATGAAGAGAGAAATGGACTTAGAAGATATTCCTT ATGGCATTTAACAaattttgacattaaaaaattgtatttctattttctaa CTATTTCCCCCTTTTTCTTTTCCACAGCGTGTGACGAGTCGTGTGAATCT TCATGTAGCGATGGTACGAATAAAGGATGTGATTCTTGTAAAGAAGGTTA CGTACAAGACGAAGAGCAAGCTTGTGTTGGTAAGAAAAATATATGAATAA AGACCTGGGAATGGGATGTGTTTGCTAGCAGGTTATCTGGTTCATTCAGA AGGATATAGGTATAGATGGATTTGATGATGATGGTTGGTTTTATTGGTTA TTGGAAAGAAAACATATAGAGcgctttctttaatttttaactCTTTCTTC CTTTTCCAGACAAGAATGAATGCGATGAAGACGACACATGTGTCGAAGGA AAATTTTGCGTCAATTCTAAAGGATCATATGAATGCAAAGGTGGGGCAAA AAACAATCGCTAAATATTTTATTCGATTAATCGCTTTGAAATACTGACGA GGGAGGGTGTTTTTGGGAAAGAGTAGGAAGTTGTTGGAAAATGCAACCCT TTCTAATTCAGTGTCATCACACAATGAATGAATAAACTTATTAACCAAAT TTTTGAACCTCAATACTACATACTGTCAGCAAGGATAGGTGCATGAAGCG ATGGATTTGAGACAAACTCTGCTTTGTTTAATCCGGAAAATCTTCAATGT TTTAGGTCAATCCACTCACAGTTAATTTATATCTCActtatttctttcaa aatgatccATCAGTAATTTTGACTATTTTATTGATAGATTGTCACGCATC CTGTGAGGGTGGATGTACTGAAGCTAGTCGTTTCAATTGTGTACAATGCA AAAGTGGATGGAAAGCTATAGAAGGTCAACAAGGATGTGAAGGTATTATA ACAAACCTTTTCCTACTAGTCTTAGAGCGTTCATGGGTGATCGTTATGAG TATAACTTCTTACTTTACAATATAATtgtgaagaaataaaaaatttctgt cCGACTCATATTCACTCATGGGATTTGGGTGGAAGAGCAGCATAAGCATT TCGTCTTTATTGGGACTCATCAGCACTGAATACTGCGTACTGCGTACTTT ATATATTTACATAACTTGAAAGGCACGCAACCAATGCTCGGGGatcgggt tttcgaaaacaaaggGAGGAATAGACCCCCTTCGCTCTATGGAAAATTCT TCACGAACTTTCGAAGAGGGCTTGGGTCAAATTATATCGGAGGTCCTAAA AAGTCAAATTTGCGACGCTTATTGTTCCATCCATGTTGAAAAGGGGGCTG AGAAGAATAGACCATATTCAGACGTTATTGTTTAGCATCGCTTCggtagt ttttttataaaattggaACAGCTCCATTCCGATGAAAAAGTGGACCTTAG CTGTTTCGATCCGTTATGCTTTGTCATGTCTTATGTTTTGACATTTCGAA CTTTCGGTGTCTACACAGTGTTTCGGAAGTGTTTCGTTTCGAATCATAAT GTCTCATGTTCGCACGTGAGGATTCCGTTTGGCTCCGAAAccaaatgaag ccattctactggttagaagtgacgtaaaacttgaataTAACCATTAGAAT GTCTTCATTCCGTTTCAGAGCGAATCGGAACCAtagcgtgtgaacgtggt ctGAACATAGTCTAAATCTCTGTCCCTCGCTTTCTTTTTACAGACGTCAA CGAATGTGAAGGAGAACACGGATGCAGTGCTGGTACATACTGTAAAAATA CTGATGGTAAACACGAATGTTTATCTTGTCATTCTTCGTGCTCCACTGAA GGTATTTATTTATGTAATCTAACGTTTTTAATTCTTGTTCTATTTTTCCG TGTTACTTGATCCTGTCACCATGTTATTACGTTAACAAACATTAATGCTT TTTATTTTCAACGTTTTCCATTCCttatattttcgttattttcgaCAGTA TTTGCTTATAAGATTCAAGAAAAAATGACCAAGAAAGTCGAATCATTAGA ATAATCGCTGCCGACTACGAGTAATACTCGTAATCATTCGTTTAATTACT GATACGGTTTCAAAGGGCCATAGCTTTTTCTGCATTATAACTTCTTCATT GCAATTTACAGTTTATTAAGGtttaaattttataagaatttgaagcaaaa taacaGGCCCTGGATGCCAGACTTGTAAAATAACTCCAAGTTTTCAGTTT CCAATCATTGGAACCCTTTCCTGATCCATCATATTCAATGTTTCCTTTTC aataagggctacttagactacacaatatattgaggAACAATATTTGTACG GAGTAAACAACAGGtactctatttataaaaagtaattttctttctttaaa aatccccctatattgttggaatattgcaaatcgagctgacattATATCGC GGACACCTTATCAATATATTGCTGGCACTGAGCAATATATCGTCAATATA TTGCCAATATGTTGCCtggcaatatattgtgtagtgtatgtagccctatA CTTATGAATCCAGAAAACATAATTAACAGAAATCTGTTTATGTTTATCTT ATTCAGGTTGTACAGGTGAAGGTCCAGACAAATGTTTAGTCTGTAGCAAT GGATGGGAGATGAACAGTGAGGAAGGTACAGGCTGTGTTGATGTTGACCA ATGCAAAACGAAAGAAGTGCAATGTAAACATGGGGAAGTTTGCGTTAATA GTGAAGGCCCTGATAAATGTGAAGGTaagatattattattattcagTGGC AGTAATTGTTAGCACAAggaagtctctttaactcgaaactATAAATCGAA TGTCGGGTTTGGGNTTGGGTCATGATTGGATGATGTCAAATATGCGAAAT AAAAGTCGACCAAACCCCATATATTCCTACCTAATCCCATAAATTTCTGT TCAACTCTTAGCGGCACGGTAATGCTTTAAATGTACATGGAAATTCTTTT CAACGACCTTATCGAAAATATAAGTGTAGGAGTGCTAAGAGTTGATTGGT GTATTGCGGTGTTTAGAGTTGATTAGATTTATCTTCAATCTTTGTCTTTC ATTCTTTTCATTTAGCCTGTCATGAAACGTGTAAAGAATGTGTTGGAACA GAGGCTGGTAATTGTCTCAGTTGTTATCCAGGCTTCGCACTCATAGATTC CAAATGTAAAGGTAATTGAATctggtttaaaaatttttggtttgCAATGC TGATTTTAGCAAATTATTGACTGAAGCCTTTACCGTACTTCCTCAAATAA GCAACTAGGCGAATTTGATCGATTCACGGTTTGAATCACTATCAAATTTA GGGGCTCTATTCTGTGGCTTAACGCACGATGAAGAATCGACGGATCTGTG ATGTTTTTCCTCCCTTAcgtaaagaaataaaaagcatTAGTTAGTAGTAT TATTTTGGTCTATTTATTTTGTCGCTAAACTATATTACCCGTTAAAGTTG ATCTTGAAGGGGTtgctcaaaaatatttgaagctaAAAGGGGGAAACGGA AGAGTGGacaatattcttttttttttctcttttaataaTTTTACTGTAAT TTTGGTATTCTTTTCCTTGAAGATATAAACGAATGTTCGAACGACCCTTG TAATGAAAAGACGGAGAACTGCAACAACACTCCTGGCTCATATTCCTGCA AATGTAAAAAAGGCTGGGTACGAACAAAACAGGGTGActgcaaaaagaag aaaacaaaatcaaagaagaaaaataaaaaaggtacGAAGAAAGAAAAATC GTGGAAAGATGATCTATACGATGATATTATGTCAGGGAAAGCGTTCGAAA AGGAGGAAAATTTCCGTAAATTTATGTACGGTCATGTTGTAGTGGCTGCA TTCTTGATGATCATGTATCGCTACAGGTGTTATAATTTGTTAGCACTCTC TGTGGGTTGTTATGCAGTTGTTGCTAGTTATGTTTATACTAGACATggga agaatattttttgatgcATTGCCTGCCATTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003720XLOC_003720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006562-exon-sc0000069-1491911889:34936..35138TCONS_00006562-exon-sc0000069-1491911889:34936..35138Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:34936..35138TCONS_00006562-exon-sc0000069-1510915933:34936..35138Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:34936..35138TCONS_00006562-exon-sc0000069-1575043694:34936..35138Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:35335..35417TCONS_00006562-exon-sc0000069-1491911889:35335..35417Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:35335..35417TCONS_00006562-exon-sc0000069-1510915933:35335..35417Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:35335..35417TCONS_00006562-exon-sc0000069-1575043694:35335..35417Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:35564..35618TCONS_00006562-exon-sc0000069-1491911889:35564..35618Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:35564..35618TCONS_00006562-exon-sc0000069-1510915933:35564..35618Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:35564..35618TCONS_00006562-exon-sc0000069-1575043694:35564..35618Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:35790..35851TCONS_00006562-exon-sc0000069-1491911889:35790..35851Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:35790..35851TCONS_00006562-exon-sc0000069-1510915933:35790..35851Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:35790..35851TCONS_00006562-exon-sc0000069-1575043694:35790..35851Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:36980..37032TCONS_00006562-exon-sc0000069-1491911889:36980..37032Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:36980..37032TCONS_00006562-exon-sc0000069-1510915933:36980..37032Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:36980..37032TCONS_00006562-exon-sc0000069-1575043694:36980..37032Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:37759..37797TCONS_00006562-exon-sc0000069-1491911889:37759..37797Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:37759..37797TCONS_00006562-exon-sc0000069-1510915933:37759..37797Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:37759..37797TCONS_00006562-exon-sc0000069-1575043694:37759..37797Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:37952..38001TCONS_00006562-exon-sc0000069-1491911889:37952..38001Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:37952..38001TCONS_00006562-exon-sc0000069-1510915933:37952..38001Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:37952..38001TCONS_00006562-exon-sc0000069-1575043694:37952..38001Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:38381..38495TCONS_00006562-exon-sc0000069-1491911889:38381..38495Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:38381..38495TCONS_00006562-exon-sc0000069-1510915933:38381..38495Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:38381..38495TCONS_00006562-exon-sc0000069-1575043694:38381..38495Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:38863..38964TCONS_00006562-exon-sc0000069-1491911889:38863..38964Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:38863..38964TCONS_00006562-exon-sc0000069-1510915933:38863..38964Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:38863..38964TCONS_00006562-exon-sc0000069-1575043694:38863..38964Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:39145..39225TCONS_00006562-exon-sc0000069-1491911889:39145..39225Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:39145..39225TCONS_00006562-exon-sc0000069-1510915933:39145..39225Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:39145..39225TCONS_00006562-exon-sc0000069-1575043694:39145..39225Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:39573..39677TCONS_00006562-exon-sc0000069-1491911889:39573..39677Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:39573..39677TCONS_00006562-exon-sc0000069-1510915933:39573..39677Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:39573..39677TCONS_00006562-exon-sc0000069-1575043694:39573..39677Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:40479..40586TCONS_00006562-exon-sc0000069-1491911889:40479..40586Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:40479..40586TCONS_00006562-exon-sc0000069-1510915933:40479..40586Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:40479..40586TCONS_00006562-exon-sc0000069-1575043694:40479..40586Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:41342..41509TCONS_00006562-exon-sc0000069-1491911889:41342..41509Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:41342..41509TCONS_00006562-exon-sc0000069-1510915933:41342..41509Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:41342..41509TCONS_00006562-exon-sc0000069-1575043694:41342..41509Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:41851..41946TCONS_00006562-exon-sc0000069-1491911889:41851..41946Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:41851..41946TCONS_00006562-exon-sc0000069-1510915933:41851..41946Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:41851..41946TCONS_00006562-exon-sc0000069-1575043694:41851..41946Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1491911889:42358..42770TCONS_00006562-exon-sc0000069-1491911889:42358..42770Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1510915933:42358..42770TCONS_00006562-exon-sc0000069-1510915933:42358..42770Clytia hemisphaericaexon
TCONS_00006562-exon-sc0000069-1575043694:42358..42770TCONS_00006562-exon-sc0000069-1575043694:42358..42770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:34936..42770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.18405 9.67119 11.9392 7.91719 21.7537 16.4424 42.9474 51.159 16.7185 19.5552 14.1093 7.85879 10.8189 9.52943 10.6104 13.1302 12.9644 14.8366 8.52445 8.34353 6.9504 6.25974 11.4813 11.5055 8.46973 11.9372 15.1314 8.67462 11.2577 10.0852
Blast
BLAST of TCONS_00006562 vs. Swiss-Prot (Human)
Match: CREL1 (Cysteine-rich with EGF-like domain protein 1 OS=Homo sapiens GN=CRELD1 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 6.858e-54
Identity = 120/292 (41.10%), Postives = 175/292 (59.93%), Query Frame = 3
Query:  165 CNTCRDIVKNFKKGLDKTAKDHFGGGDTAWEESRLGSFARSETRLLEILEGACEGAAKESRCHAIVXXXXXXXXXXWFNKHKELDQLEKYLCIDTMQACCPEGQYGKECKDCPGGSKSPCNGHGTCKGSGTREGNGKCKCDDAYQGDLCDECSEKYYK-DTNGSCLAXXX--XXXXXXXXGTNKGCDSCKEGYVQDEEQACVDKNEC-DEDDTCVEGKFCVNSKGSYECKDCHASCEGGCTEASRFNCVQCKSGWKAIEGQQGCEDVNECEGEHGCSAGTYCKNTDGKHECL 1028
            C+TCR +V +F KGL++T +D+FGGG+TAWEE  L  +  SETRL+E+LEG C  +  +  CH ++E  EE +E +WF+K +E   L ++LC D+++ CCP G +G  C  CPGG++ PC G+G C+G GTR G+G C C   Y G+ C +C   Y++ + N S L C       + CS      C  CK+G+     + CVD +EC  E   C   +FCVN++GSYEC+DC  +C  GC  A    C +C  G++ +  +  C DV+ECE E        C+NT+G + C+
Sbjct:   46 CHTCRGLVDSFNKGLERTIRDNFGGGNTAWEEENLSKYKDSETRLVEVLEGVC--SKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPAGTFGPSCLPCPGGTERPCGGYGQCEGEGTRGGSGHCDCQAGYGGEACGQCGLGYFEAERNASHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLK-CVDIDECGTEGANCGADQFCVNTEGSYECRDCAKACL-GCMGAGPGRCKKCSPGYQQVGSK--CLDVDECETEVCPGENKQCENTEGGYRCI 331          

HSP 2 Score: 87.8113 bits (216), Expect = 2.165e-18
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  978 CSAGTYCKNTDGKH-ECLSCHSSCSTEGCTGEGPDKCLVCSNGWEMNSEEGTGCVDVDQCKTKEVQCKHGEVCVNSEGPDKCEACHETCKECVGTEAGNCLSCYPGFALIDSKCKDINECSNDPCNEKTENCNNTPGSYSCKCKKGW 1415
            C  G +    +  H  C +C   C+   C+G     CL C  GW ++  +   CVD+D+C T+   C   + CVN+EG  +C  C + C  C+G   G C  C PG+  + SKC D++EC  + C  + + C NT G Y C C +G+
Sbjct:  195 CGLGYFEAERNASHLVCSACFGPCAR--CSGPEESNCLQCKKGWALHHLK---CVDIDECGTEGANCGADQFCVNTEGSYECRDCAKACLGCMGAGPGRCKKCSPGYQQVGSKCLDVDECETEVCPGENKQCENTEGGYRCICAEGY 336          
The following BLAST results are available for this feature:
BLAST of TCONS_00006562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CREL16.858e-5441.10Cysteine-rich with EGF-like domain protein 1 OS=Ho... [more]
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