TCONS_00006560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006560
Unique NameTCONS_00006560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006560 ID=TCONS_00006560|Name=TCONS_00006560|organism=Clytia hemisphaerica|type=transcript|length=404bp
TCCGGCTCTCCTGCAGTTACAGTAAACACGTATCTCGTACCAGTAATCAG
AGATCTTTTACAAGTAAAGACGTACCTTGCAAAAGTAAATACGTATCTTG
CACCAGTAAACAAGTATCCATTGAAAGAAGAGAAACACGAATTTGCAGTG
CAACATTACACGTAATCGGTATGTTGGTTCAATAACTCCCAGCATAAAGT
TATCGAGTTGTTGTAACAAAGGTAACGTAAGACTTATTCATCACGATGAC
GAATCTATCAGAAGAAGACTTTTATGTGAAAAGAAATCGATTTGTTGATA
TCATCATGAACTCTACGCAGCAAATGCAAAAAATCTATAGCAGAAAGGAA
GACCTTGTGCAAAATATATTATCCTATGGTTGGGAAAGAGAAAGACTGCT
GACA
Run BLAST on NCBI

transcript from alignment at sc0000067:735807..736210

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006560 ID=TCONS_00006560|Name=TCONS_00006560|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0000067:735807..736210 (Clytia hemisphaerica)
TGTCAGCAGTCTTTCTCTTTCCCAACCATAGGATAATATATTTTGCACAA
GGTCTTCCTTTCTGCTATAGATTTTTTGCATTTGCTGCGTAGAGTTCATG
ATGATATCAACAAATCGATTTCTTTTCACATAAAAGTCTTCTTCTGATAG
ATTCGTCATCGTGATGAATAAGTCTTACGTTACCTTTGTTACAACAACTC
GATAACTTTATGCTGGGAGTTATTGAACCAACATACCGATTACGTGTAAT
GTTGCACTGCAAATTCGTGTTTCTCTTCTTTCAATGGATACTTGTTTACT
GGTGCAAGATACGTATTTACTTTTGCAAGGTACGTCTTTACTTGTAAAAG
ATCTCTGATTACTGGTACGAGATACGTGTTTACTGTAACTGCAGGAGAGC
CGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003718XLOC_003718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006560-exon-sc0000067-1491911889:735807..736210TCONS_00006560-exon-sc0000067-1491911889:735807..736210Clytia hemisphaericaexon
TCONS_00006560-exon-sc0000067-1510915933:735807..736210TCONS_00006560-exon-sc0000067-1510915933:735807..736210Clytia hemisphaericaexon
TCONS_00006560-exon-sc0000067-1575043694:735807..736210TCONS_00006560-exon-sc0000067-1575043694:735807..736210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:735807..736210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.684366	1.2054	0.459161	0.321696	1.02501	0.193881	0.467818	0.216927	0	0.892197	0	0.242338	0.279488	0	0	0	0	0	0	0.202383	0	0.257404	0	0.805617	0	0.447283	0	0	0.386722	0.343779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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