TCONS_00006558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006558
Unique NameTCONS_00006558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006558 ID=TCONS_00006558|Name=TCONS_00006558|organism=Clytia hemisphaerica|type=transcript|length=487bp
gaaaaacttgttgaaattgaacTGCTACTTCAAAAATCCTTTGCTCAAGA
GAGGGAACAGAAAGAAGCTCAAGCAACCTCTAAAATCAAATCCAACCCAA
AATTCTTTTACTCGTACACAAATCGCttctcgaaatctaaaccaAAAGTT
GGACCCTTAATTGATCCAGACACTAACAAATTGACTAATGATCCCCTTTT
GATGGCCAATATCCCACAAAACCAATACAAGCCTGTCTTCACCCAACCTC
TTCAAAACTACGACCTTCATCCACTAGAATCACAAATACCAACACTTGAA
GATATCAATCTGACTATCGAggaatttgtcaaagaaatcgGTACACTGTC
ACCAACTTCAGCACCTGGACCTGATTGTTTTCCAGCTATTCCTTTGCTAA
GAACTTAAGGTAACATTGCTCTACCACTTTCAATCATCTGGAGAAACATA
CTTAGCAAAGGAATCactccaaaacttttaaaaacta
Run BLAST on NCBI

protein sequence of TCONS_00006558-protein

>TCONS_00006558-protein ID=TCONS_00006558-protein|Name=TCONS_00006558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
EKLVEIELLLQKSFAQEREQKEAQATSKIKSNPKFFYSYTNRFSKSKPKV
GPLIDPDTNKLTNDPLLMANIPQNQYKPVFTQPLQNYDLHPLESQIPTLE
DINLTIEEFVKEIGTLSPTSAPGPDCFPAIPLLRT
Run BLAST on NCBI

transcript from alignment at sc0000067:709956..710442

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006558 ID=TCONS_00006558|Name=TCONS_00006558|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at sc0000067:709956..710442 (Clytia hemisphaerica)
tagtttttaaaagttttggagtGATTCCTTTGCTAAGTATGTTTCTCCAG
ATGATTGAAAGTGGTAGAGCAATGTTACCTTAAGTTCTTAGCAAAGGAAT
AGCTGGAAAACAATCAGGTCCAGGTGCTGAAGTTGGTGACAGTGTACcga
tttctttgacaaattccTCGATAGTCAGATTGATATCTTCAAGTGTTGGT
ATTTGTGATTCTAGTGGATGAAGGTCGTAGTTTTGAAGAGGTTGGGTGAA
GACAGGCTTGTATTGGTTTTGTGGGATATTGGCCATCAAAAGGGGATCAT
TAGTCAATTTGTTAGTGTCTGGATCAATTAAGGGTCCAACTTTtggttta
gatttcgagaaGCGATTTGTGTACGAGTAAAAGAATTTTGGGTTGGATTT
GATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTCCCTCTCTTGAGCAAAGG
ATTTTTGAAGTAGCAgttcaatttcaacaagtttttc

Coding sequence (CDS) from alignment at sc0000067:709956..710442

>TCONS_00006558 ID=TCONS_00006558|Name=TCONS_00006558|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000067:709956..710442 (Clytia hemisphaerica)
TTAAGTTCTTAGCAAAGGAATAGCTGGAAAACAATCAGGTCCAGGTGCTG
AAGTTGGTGACAGTGTACcgatttctttgacaaattccTCGATAGTCAGA
TTGATATCTTCAAGTGTTGGTATTTGTGATTCTAGTGGATGAAGGTCGTA
GTTTTGAAGAGGTTGGGTGAAGACAGGCTTGTATTGGTTTTGTGGGATAT
TGGCCATCAAAAGGGGATCATTAGTCAATTTGTTAGTGTCTGGATCAATT
AAGGGTCCAACTTTtggtttagatttcgagaaGCGATTTGTGTACGAGTA
AAAGAATTTTGGGTTGGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCT
GTTCCCTCTCTTGAGCAAAGGATTTTTGAAGTAGCAgttcaatttcaaca
agtttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003716XLOC_003716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006558-exon-sc0000067-1491911889:709956..710442TCONS_00006558-exon-sc0000067-1491911889:709956..710442Clytia hemisphaericaexon
TCONS_00006558-exon-sc0000067-1510915933:709956..710442TCONS_00006558-exon-sc0000067-1510915933:709956..710442Clytia hemisphaericaexon
TCONS_00006558-exon-sc0000067-1575043694:709956..710442TCONS_00006558-exon-sc0000067-1575043694:709956..710442Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006558-proteinTCONS_00006558-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:709956..710442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.164984	0.794073	1.09012	0	2.23584	1.64312	1.19361	3.01567	0.866308	0.192438	0.238164	0.414772	0	0.35447	0	0	0.572871	0.122527	0.489033	0.228231	0	0	0	0.273968	0	0.951786	0.224125	0	0.600774	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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