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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006553 ID=TCONS_00006553|Name=TCONS_00006553|organism=Clytia hemisphaerica|type=transcript|length=1147bp
gaaAAAGCATGAATAATACAACACACGCAAAGAACTGTACGACAGTTCCC
ATGGAGGCTGTTCCCAGCATAATCTTCGTTGTTTTGATAGCTATCATCCT
GGCGTTGCTCAATGTCGTTGCACTGGTTGTGATGTTCACAACTTATTGCA
AGGGACTAAAGTTTCTTTCCAAATTCCCAATTATCTGTCTTTTGGTTGGT
TCGACTATTAAAGGTGGCGTAGCAGCCCCTTTATACATTTACAAAATCTT
ACTATTTCCTGAATCGCATTCTGAACCAAAATGGTTATGCGACTCAAGTC
GATTTTTACGCATATTCAGTTCCCATTTGATGAAAATCAATATTATGTCA
GAGACTTTACAACGCTTGTATGCTATTAGTAAATCGTCCAAGAAACGCTC
TACAAAATGCTTGGTGTGGTTTGGAAGGATCTTGTACTTtatatacatta
tatacatGATCAGCCCCATTGTAATTGACATTCTCCCGTTTTCCGAACAT
CCCAGGCGGAAGTATCATTGTAATTACGTGCCAAATAGACTTTGGGTGAT
ATCTGTTGAAGTGGTATACAGCATTGTTCCTCTTTCCATAGCGCTTTTAT
GCCAAATAATTATTATATGTCTGGCATATAAGCAAGCTAAGGCTAAGGCA
ATTTCGCTACCGATATCGGATAATCAAGAAGGGCAACCATTGAGGATGAA
CAACGAAAGCAATATCAGCAGAAGAGAAGTCAAATTTACTTTCAAAAGTA
AAGCCTCACTCAAATTAATTGTGACCTCtggtatttttttgttttgctgg
tTTGCCTTGagtgtttattttttgattgaaattgaaaagcaTCACCTTAT
ACCAAAAGATGAATGTAGTGTGAGACGACTGCCAAAGGTGCTGGAATTTG
TATCTTGTTTGGGGGTACCGCTTGTCTATTGTTTCTGGGATGACGAATTT
CTACAATCTGCAAGACACATTCTTAGATGCTGCTGCCGCAGAGAAAATCA
TTTTATCcctctttcttcttttcttcaaattcttttttgttcttgatctt
gatgttgaaattttacgcgaaaaaaatgcttaaatgcaatacataaaatt
tttatttaccaaaacccacgaatttttttcaagagccatgaattttt Run BLAST on NCBI protein sequence of TCONS_00006553-protein >TCONS_00006553-protein ID=TCONS_00006553-protein|Name=TCONS_00006553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
KSMNNTTHAKNCTTVPMEAVPSIIFVVLIAIILALLNVVALVVMFTTYCK
GLKFLSKFPIICLLVGSTIKGGVAAPLYIYKILLFPESHSEPKWLCDSSR
FLRIFSSHLMKINIMSETLQRLYAISKSSKKRSTKCLVWFGRILYFIYII
YMISPIVIDILPFSEHPRRKYHCNYVPNRLWVISVEVVYSIVPLSIALLC
QIIIICLAYKQAKAKAISLPISDNQEGQPLRMNNESNISRREVKFTFKSK
ASLKLIVTSGIFLFCWFALSVYFLIEIEKHHLIPKDECSVRRLPKVLEFV
SCLGVPLVYCFWDDEFLQSARHILRCCCRRENHFIPLSSFLQILFCS Run BLAST on NCBI transcript from alignment at sc0000067:480729..481875 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006553 ID=TCONS_00006553|Name=TCONS_00006553|organism=Clytia hemisphaerica|type=transcript|length=1147bp|location=Sequence derived from alignment at sc0000067:480729..481875 (Clytia hemisphaerica)
aaaaattcatggctcttgaaaaaaattcgtgggttttggtaaataaaaat
tttatgtattgcatttaagcatttttttcgcgtaaaatttcaacatcaag
atcaagaacaaaaaagaatttgaagaaaagaagaaagaggGATAAAATGA
TTTTCTCTGCGGCAGCAGCATCTAAGAATGTGTCTTGCAGATTGTAGAAA
TTCGTCATCCCAGAAACAATAGACAAGCGGTACCCCCAAACAAGATACAA
ATTCCAGCACCTTTGGCAGTCGTCTCACACTACATTCATCTTTTGGTATA
AGGTGAtgcttttcaatttcaatcaaaaaataaacactCAAGGCAAacca
gcaaaacaaaaaaataccaGAGGTCACAATTAATTTGAGTGAGGCTTTAC
TTTTGAAAGTAAATTTGACTTCTCTTCTGCTGATATTGCTTTCGTTGTTC
ATCCTCAATGGTTGCCCTTCTTGATTATCCGATATCGGTAGCGAAATTGC
CTTAGCCTTAGCTTGCTTATATGCCAGACATATAATAATTATTTGGCATA
AAAGCGCTATGGAAAGAGGAACAATGCTGTATACCACTTCAACAGATATC
ACCCAAAGTCTATTTGGCACGTAATTACAATGATACTTCCGCCTGGGATG
TTCGGAAAACGGGAGAATGTCAATTACAATGGGGCTGATCatgtatataa
tgtatataAAGTACAAGATCCTTCCAAACCACACCAAGCATTTTGTAGAG
CGTTTCTTGGACGATTTACTAATAGCATACAAGCGTTGTAAAGTCTCTGA
CATAATATTGATTTTCATCAAATGGGAACTGAATATGCGTAAAAATCGAC
TTGAGTCGCATAACCATTTTGGTTCAGAATGCGATTCAGGAAATAGTAAG
ATTTTGTAAATGTATAAAGGGGCTGCTACGCCACCTTTAATAGTCGAACC
AACCAAAAGACAGATAATTGGGAATTTGGAAAGAAACTTTAGTCCCTTGC
AATAAGTTGTGAACATCACAACCAGTGCAACGACATTGAGCAACGCCAGG
ATGATAGCTATCAAAACAACGAAGATTATGCTGGGAACAGCCTCCATGGG
AACTGTCGTACAGTTCTTTGCGTGTGTTGTATTATTCATGCTTTttc Coding sequence (CDS) from alignment at sc0000067:480729..481875 >TCONS_00006553 ID=TCONS_00006553|Name=TCONS_00006553|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000067:480729..481875 (Clytia hemisphaerica)
tcaagaacaaaaaagaatttgaagaaaagaagaaagaggGATAAAATGAT
TTTCTCTGCGGCAGCAGCATCTAAGAATGTGTCTTGCAGATTGTAGAAAT
TCGTCATCCCAGAAACAATAGACAAGCGGTACCCCCAAACAAGATACAAA
TTCCAGCACCTTTGGCAGTCGTCTCACACTACATTCATCTTTTGGTATAA
GGTGAtgcttttcaatttcaatcaaaaaataaacactCAAGGCAAaccag
caaaacaaaaaaataccaGAGGTCACAATTAATTTGAGTGAGGCTTTACT
TTTGAAAGTAAATTTGACTTCTCTTCTGCTGATATTGCTTTCGTTGTTCA
TCCTCAATGGTTGCCCTTCTTGATTATCCGATATCGGTAGCGAAATTGCC
TTAGCCTTAGCTTGCTTATATGCCAGACATATAATAATTATTTGGCATAA
AAGCGCTATGGAAAGAGGAACAATGCTGTATACCACTTCAACAGATATCA
CCCAAAGTCTATTTGGCACGTAATTACAATGATACTTCCGCCTGGGATGT
TCGGAAAACGGGAGAATGTCAATTACAATGGGGCTGATCatgtatataat
gtatataAAGTACAAGATCCTTCCAAACCACACCAAGCATTTTGTAGAGC
GTTTCTTGGACGATTTACTAATAGCATACAAGCGTTGTAAAGTCTCTGAC
ATAATATTGATTTTCATCAAATGGGAACTGAATATGCGTAAAAATCGACT
TGAGTCGCATAACCATTTTGGTTCAGAATGCGATTCAGGAAATAGTAAGA
TTTTGTAAATGTATAAAGGGGCTGCTACGCCACCTTTAATAGTCGAACCA
ACCAAAAGACAGATAATTGGGAATTTGGAAAGAAACTTTAGTCCCTTGCA
ATAAGTTGTGAACATCACAACCAGTGCAACGACATTGAGCAACGCCAGGA
TGATAGCTATCAAAACAACGAAGATTATGCTGGGAACAGCCTCCATGGGA
ACTGTCGTACAGTTCTTTGCGTGTGTTGTATTATTCATGCTTTt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006553-exon-sc0000067-1491911889:480729..481875 | TCONS_00006553-exon-sc0000067-1491911889:480729..481875 | Clytia hemisphaerica | exon |
| TCONS_00006553-exon-sc0000067-1510915933:480729..481875 | TCONS_00006553-exon-sc0000067-1510915933:480729..481875 | Clytia hemisphaerica | exon |
| TCONS_00006553-exon-sc0000067-1575043694:480729..481875 | TCONS_00006553-exon-sc0000067-1575043694:480729..481875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:480729..481875 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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