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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006550 ID=TCONS_00006550|Name=TCONS_00006550|organism=Clytia hemisphaerica|type=transcript|length=2130bp
ATTTATATCTTTCATAATAAATACattcaatgttttcaaaaattgaagat
aaaataatatttctaaCTGAAGATATGAGTGagtaatttaaagaaaaatg
aaaatttacaaaaggGATAGCATATAAATATATAATTCCATATACAAAGA
AATTATCATGAAAAAAAGgatacaaacaaaaacaaaaatggtgtTGTTAA
GCATTTGCCAGGTTATTGCGGGGGAGATTTGTGTCATCTATAGTTGGATT
TATTGATTTGACTGAGGCTCCACtgtttcttatttttgattttcaggtTT
TAATGATTTTAACTTTAATTTCTTAATATGCTTACGCTATTCAATTCTCA
TTGTCCAAAAAGGGTTCGAAATAAGCTtattttttagctatttttcatAT
CGACACATTGCAGCTCCGATCTTTACCAAAACTAAATACATCCATTGATT
AGTTCTACCAGTAATCAAGATGATGCATACGCATATACAGAACATGACTA
AGGATAACCCGTGTcgcacagacccgctgggacccctgcccactggaaaa
cttggccaaaatttcgtcgcCGGTGGGAAAAATCCccatttaaaaatcaa
aaatcctcAATGGATTCCGATggaaatttttgtccccactttgggaaaaa
gttcctctggggctgtgagacaggggttttCTAGGGGTTAGGAATGTtac
tgttaatttttttttttgcatttaggTGCCTCACATTGTGTCACATTTTC
GCGATTCTTCTGACCGGAAGTAGTTTCTGTTCATACAGGTATCATAAAGC
AAATAATTGTTCTAATAATCTATCTATGTCATATAATAAATTCATTAAAC
TttggagaaaaagaaaagtaaagtatgccatcaaaatttttcttggaGTA
AATTccagtgaaattttgaaaatctattttgatAGTTACTTAACGTTTTT
CAGAGCCTTCAAAAGACTAGTGGTTAGTAGTATTTTTCAGCATNTTCTTA
ATATGCTTACGCTATTCAATTCTCATTGTCCAAAAAGGGTTCGAAATAAG
CTtattttttagctatttttcatATCGACACATTGCGGCTCCGATCTTTA
CCAAAACTAAATACATCCATTGATTAGTTCTACCAGTAATCAAGACGATG
CATACGCATATACAGAACATGACTAAGGATAACCCGTGTcgcacagaccc
gctgggacccctgcccactggaaaacttggccaaaatttcgtcgcCGGTG
GGTAAAATTCccatttaaaaatcaaaaatcctcAATGGATTCCGATggaa
atttttgtccccactttgggaaaaagttcctctggggctgtgagacaggg
gttttCTAGGGGTTAGGAATGTtactgttaatttttttttttgcatttag
gTGCCTCACATTGTGTCACATTTTCGCGATTCTTCTGACCGGAAGTAGTT
TCTGTTCATACAGGTATCATAAAGCAAATAATTGTTCTAATAATCTATCT
ATGTCATATAATAAATTCATTAAACTttggagaaaaagaaaagtaaagta
tgccatcaaaatttttcttggaGTAAATTccagtgaaattttgaaaatct
attttgatAGTTACTTAACGTTTTTCAGAGCCTTCAAAAGACTAGTGGTT
AGTagtatttttcagcatttttaggGAATTCCTTGCGGTCTAAAACTGGT
TCTCGTCATCAATAGTGTACTTAACTCTCAAGCTGGACACAATTTAGAAA
TATTTATGTCAAGGTTGctttacaaaaatttgatttataggaataaatta
aaaagtttctaaatataaagttttttgacaAAGAGAGTTCATCATTTTCA
TTANgggggggggggtactttgGCAAAATGGGGTTCAGGGATGTGGAGAT
GGTCAGGGTATCTTTTTTCACTTCCaccagtcccacgtagggtcgcaaaa
acacccaaaaatcagtccctcgagGTACCTTTTTGGgggattttgagaga
aaaagtaGAACATTTTGAGAATTTGCCAGGTTTAGTCTCATTCAGGgtca
cctttaaaaaaaaacaagtcccacgtagggttcATTTATCGAACCTCGGT
GGTACAACCCCCGTAGGTCGGTAAGGGTAG Run BLAST on NCBI protein sequence of TCONS_00006550-protein >TCONS_00006550-protein ID=TCONS_00006550-protein|Name=TCONS_00006550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MLLLIFFFAFRCLTLCHIFAILLTGSSFCSYRYHKANNCSNNLSMSYNKF
IKLWRKRKVKYAIKIFLGVNSSEILKIYFDSYLTFFRAFKRLVVSSIFQH
XLNMLTLFNSHCPKRVRNKLIF Run BLAST on NCBI transcript from alignment at sc0000067:454413..456542 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006550 ID=TCONS_00006550|Name=TCONS_00006550|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at sc0000067:454413..456542 (Clytia hemisphaerica)
CTACCCTTACCGACCTACGGGGGTTGTACCACCGAGGTTCGATAAATgaa
ccctacgtgggacttgtttttttttaaaggtgacCCTGAATGAGACTAAA
CCTGGCAAATTCTCAAAATGTTCtactttttctctcaaaatcccCCAAAA
AGGTACctcgagggactgatttttgggtgtttttgcgaccctacgtggga
ctggtGGAAGTGAAAAAAGATACCCTGACCATCTCCACATCCCTGAACCC
CATTTTGCcaaagtacccccccccccNTAATGAAAATGATGAACTCTCTT
tgtcaaaaaactttatatttagaaactttttaatttattcctataaatca
aatttttgtaaagCAACCTTGACATAAATATTTCTAAATTGTGTCCAGCT
TGAGAGTTAAGTACACTATTGATGACGAGAACCAGTTTTAGACCGCAAGG
AATTCcctaaaaatgctgaaaaatactACTAACCACTAGTCTTTTGAAGG
CTCTGAAAAACGTTAAGTAACTatcaaaatagattttcaaaatttcactg
gAATTTACtccaagaaaaattttgatggcatactttacttttctttttct
ccaaAGTTTAATGAATTTATTATATGACATAGATAGATTATTAGAACAAT
TATTTGCTTTATGATACCTGTATGAACAGAAACTACTTCCGGTCAGAAGA
ATCGCGAAAATGTGACACAATGTGAGGCAcctaaatgcaaaaaaaaaaat
taacagtaACATTCCTAACCCCTAGaaaacccctgtctcacagccccaga
ggaactttttcccaaagtggggacaaaaatttccATCGGAATCCATTgag
gatttttgatttttaaatggGAATTTTACCCACCGgcgacgaaattttgg
ccaagttttccagtgggcaggggtcccagcgggtctgtgcgACACGGGTT
ATCCTTAGTCATGTTCTGTATATGCGTATGCATCGTCTTGATTACTGGTA
GAACTAATCAATGGATGTATTTAGTTTTGGTAAAGATCGGAGCCGCAATG
TGTCGATatgaaaaatagctaaaaaataAGCTTATTTCGAACCCTTTTTG
GACAATGAGAATTGAATAGCGTAAGCATATTAAGAANATGCTGAAAAATA
CTACTAACCACTAGTCTTTTGAAGGCTCTGAAAAACGTTAAGTAACTatc
aaaatagattttcaaaatttcactggAATTTACtccaagaaaaattttga
tggcatactttacttttctttttctccaaAGTTTAATGAATTTATTATAT
GACATAGATAGATTATTAGAACAATTATTTGCTTTATGATACCTGTATGA
ACAGAAACTACTTCCGGTCAGAAGAATCGCGAAAATGTGACACAATGTGA
GGCAcctaaatgcaaaaaaaaaaattaacagtaACATTCCTAACCCCTAG
aaaacccctgtctcacagccccagaggaactttttcccaaagtggggaca
aaaatttccATCGGAATCCATTgaggatttttgatttttaaatggGGATT
TTTCCCACCGgcgacgaaattttggccaagttttccagtgggcaggggtc
ccagcgggtctgtgcgACACGGGTTATCCTTAGTCATGTTCTGTATATGC
GTATGCATCATCTTGATTACTGGTAGAACTAATCAATGGATGTATTTAGT
TTTGGTAAAGATCGGAGCTGCAATGTGTCGATatgaaaaatagctaaaaa
ataAGCTTATTTCGAACCCTTTTTGGACAATGAGAATTGAATAGCGTAAG
CATATTAAGAAATTAAAGTTAAAATCATTAAAacctgaaaatcaaaaata
agaaacaGTGGAGCCTCAGTCAAATCAATAAATCCAACTATAGATGACAC
AAATCTCCCCCGCAATAACCTGGCAAATGCTTAACAacaccatttttgtt
tttgtttgtatcCTTTTTTTCATGATAATTTCTTTGTATATGGAATTATA
TATTTATATGCTATCccttttgtaaattttcatttttctttaaattactC
ACTCATATCTTCAGttagaaatattattttatcttcaatttttgaaaaca
ttgaatGTATTTATTATGAAAGATATAAAT Coding sequence (CDS) from alignment at sc0000067:454413..456542 >TCONS_00006550 ID=TCONS_00006550|Name=TCONS_00006550|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0000067:454413..456542 (Clytia hemisphaerica)
ctaaaaaataAGCTTATTTCGAACCCTTTTTGGACAATGAGAATTGAATA
GCGTAAGCATATTAAGAANATGCTGAAAAATACTACTAACCACTAGTCTT
TTGAAGGCTCTGAAAAACGTTAAGTAACTatcaaaatagattttcaaaat
ttcactggAATTTACtccaagaaaaattttgatggcatactttacttttc
tttttctccaaAGTTTAATGAATTTATTATATGACATAGATAGATTATTA
GAACAATTATTTGCTTTATGATACCTGTATGAACAGAAACTACTTCCGGT
CAGAAGAATCGCGAAAATGTGACACAATGTGAGGCAcctaaatgcaaaaa
aaaaaattaacagtaACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006550-exon-sc0000067-1491911889:454413..456542 | TCONS_00006550-exon-sc0000067-1491911889:454413..456542 | Clytia hemisphaerica | exon |
| TCONS_00006550-exon-sc0000067-1510915933:454413..456542 | TCONS_00006550-exon-sc0000067-1510915933:454413..456542 | Clytia hemisphaerica | exon |
| TCONS_00006550-exon-sc0000067-1575043694:454413..456542 | TCONS_00006550-exon-sc0000067-1575043694:454413..456542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:454413..456542 . |
Blast
The following BLAST results are available for this feature:
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