TCONS_00006549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006549
Unique NameTCONS_00006549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006549 ID=TCONS_00006549|Name=TCONS_00006549|organism=Clytia hemisphaerica|type=transcript|length=614bp
GGCAATCCCAAttctcttttatttaaaaaaaaaatatttctttaaagcaT
GAAAAAGTTTTTACACAAGTATAGGTTGTTTTTTGAGAGATTTGTGGTCT
TAAAAAAGACCGTTTTGGGGTACCAACAAAGATCTATTTACTGCTGGTGT
ATTTGGTGACAGCTTTGGTTCCTTCTGAGACGGCATGCTTGGCCAACTCT
CCTGGAAGCAAGAGACGAACTGAAGTTTGAACTTCACGAGATCCCATTGT
CAACCTCTTGTTTTGAATGCAAAGTCTTGATGCTTGACCAGCCAATCGTT
CGAAGATGTCGTTGACGAAAGAGTTCATGATGCTCATGGATTTGCTTNCT
CGCCCTTGTTTGAACCCAAAACGGTCTTTTTTAAGACCACAAATCTCTTA
AAAAACAACCTATacttgtttatatttttatcagAAAGGGCTTTAGACTT
CCTAGAATTTCGGAtgaattgtcaattttttgtcaCCTGCTGGTATCACG
TAGATCAGCCCTAGCTTACTGAATCTCACACGATTGGAAAATTATGTATG
aactttatgaattttaagtgtTATGTAGCTCATCAGGTTAGTGTCGAGCA
GCTACAGCTGGGAG
Run BLAST on NCBI

transcript from alignment at sc0000067:261491..262104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006549 ID=TCONS_00006549|Name=TCONS_00006549|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0000067:261491..262104 (Clytia hemisphaerica)
CTCCCAGCTGTAGCTGCTCGACACTAACCTGATGAGCTACATAacactta
aaattcataaagttCATACATAATTTTCCAATCGTGTGAGATTCAGTAAG
CTAGGGCTGATCTACGTGATACCAGCAGGtgacaaaaaattgacaattca
TCCGAAATTCTAGGAAGTCTAAAGCCCTTTctgataaaaatataaacaag
tATAGGTTGTTTTTTAAGAGATTTGTGGTCTTAAAAAAGACCGTTTTGGG
TTCAAACAAGGGCGAGNAAGCAAATCCATGAGCATCATGAACTCTTTCGT
CAACGACATCTTCGAACGATTGGCTGGTCAAGCATCAAGACTTTGCATTC
AAAACAAGAGGTTGACAATGGGATCTCGTGAAGTTCAAACTTCAGTTCGT
CTCTTGCTTCCAGGAGAGTTGGCCAAGCATGCCGTCTCAGAAGGAACCAA
AGCTGTCACCAAATACACCAGCAGTAAATAGATCTTTGTTGGTACCCCAA
AACGGTCTTTTTTAAGACCACAAATCTCTCAAAAAACAACCTATACTTGT
GTAAAAACTTTTTCAtgctttaaagaaatattttttttttaaataaaaga
gaaTTGGGATTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003707XLOC_003707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006549-exon-sc0000067-1491911889:261491..262104TCONS_00006549-exon-sc0000067-1491911889:261491..262104Clytia hemisphaericaexon
TCONS_00006549-exon-sc0000067-1510915933:261491..262104TCONS_00006549-exon-sc0000067-1510915933:261491..262104Clytia hemisphaericaexon
TCONS_00006549-exon-sc0000067-1575043694:261491..262104TCONS_00006549-exon-sc0000067-1575043694:261491..262104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:261491..262104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.397792	0.379897	2.05421	1.53664	3.03235	5.59114	0.321213	0.247687	0.421076	0.956843	0.420863	0.445481	0	0.172562	0	0.0953818	0.789126	0.192239	0.265589	0	0.254088	0	0	0.0913143	4.70501	6.43536	0	0	0	0.297181
Blast
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BLAST of TCONS_00006549 vs. Swiss-Prot (Human)
Match: H2B1H (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 8.692e-35
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = -2 
Query:  137 GRXSKSMSIMNSFVNDIFERLAGQASRLCIQNKRLTMGSREVQTSVRLLLPGELAKHAVSEGTKAVTKYTSSK 355
            G  SK+M IMNSFVNDIFER+AG+ASRL   NKR T+ SRE+QT+VRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct:   54 GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
The following BLAST results are available for this feature:
BLAST of TCONS_00006549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2B1H8.692e-3580.82Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
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