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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006545 ID=TCONS_00006545|Name=TCONS_00006545|organism=Clytia hemisphaerica|type=transcript|length=1337bp
AAACTTATAACCGTAAAAAGCCCTACAAATATTCACtctaaacattttca
aaatcttcaaactCCATGTTTTCTACGAGTTCAATTTCGTCATCTTCTGA
ATGTTCACGAGTTGTCGTCTCGTTATCTTCCGGTTGTTCGTTATCTTCCG
GTTGTTCGTTATCCTTCTGATTAGGTTTTATTCGAATATACCAGTGTGGA
TTCCTCACGATGCAGTCAAGCTTGCGAAGTAAACGAGGAAAGCTTCGAGG
GGAAGCTGCATCAATATCAAACAAATTAATGGTGGAAATCCAGTAGTGTT
GCAGATGTCTGCGTTCAACAGCAAACCTTAAGTTGCCAACAAAGTGAGAA
AAACAATCTTCAGCACTCCTTTCATTCCAAAATTCATTGGGCGTATTTTC
TAAAGTATGAAACAGAACAGTCTTCAGGTGATAAGATTTCAACCAACGTG
CAGTAGGTTGTAGATGATTCTTTGATATCATTTTCAAAGCCAAAAGACAT
TTTCTTGCTACTGGATGGACTAACGTGGAGAGTTCGACTTCCGCTTTGGA
AAATGAGTACCTCCATGTGATTCCTACGTCATCGTTCGGTTGAGATTTTG
GTACTACGTGACAACCCATCCCAAGGATTTTCTCAACATCTTGAAGACTG
GGCCAAAAACGCTGGGAACGACTCTTCCAATCACAAAGGGACGGCCAATC
AGCTTTCACACTGAATGTAAAGTCAGCGAGGAAACCATTGTTATGTataa
caaaacaacaacaattatTAAAATTCGAAGTTCCAATCATAACGTTGACC
GCAGGGCCTTCTTTTTCGACAAGTGCTGTTGAGAAGGCTGAAAAGAAATT
GGTACCTTGCGGGTAGGATTCCATTGGTGTTTGCGAAACAACTTCGTAGA
GAATATCTTTAATTTTTGAAGCGTTTAAAAATTGAACATCAGGGTAAGTA
GTAAACAAGCCACAAAACTCTGGCTTCAGTTCGTTCAATGTTTCATCGTT
AAGAAGAGATATACCAGATGAAGTGGGTTTTAGTAACACAAAACCAGGAT
CAATGCGAGGATCTGAGGATATTGCTCGAAAGTGAGCAGTCTCATTCGTT
AAATCCTCAGATGCTATGAAATGCTTGAAACTAAACATCAGATCGAAATC
TGTAAAGAGTGCGTAATCGATCGGAATCTTACGAAGCACATCATTATACC
AATCCGAAGAAGTTGGCAGGCCGAACCTTTCCACCGCACTACCAGTGAAA
AAGATATCAATAGGCTGTCCATTGAACCGTTGTTCAAGAGCATACCTAAA
CATCTCTCCTCCCTTGTGCATAAAGTTAGATTTCAGC Run BLAST on NCBI protein sequence of TCONS_00006545-protein >TCONS_00006545-protein ID=TCONS_00006545-protein|Name=TCONS_00006545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
LKSNFMHKGGEMFRYALEQRFNGQPIDIFFTGSAVERFGLPTSSDWYNDV
LRKIPIDYALFTDFDLMFSFKHFIASEDLTNETAHFRAISSDPRIDPGFV
LLKPTSSGISLLNDETLNELKPEFCGLFTTYPDVQFLNASKIKDILYEVV
SQTPMESYPQGTNFFSAFSTALVEKEGPAVNVMIGTSNFNNCCCFVIHNN
GFLADFTFSVKADWPSLCDWKSRSQRFWPSLQDVEKILGMGCHVVPKSQP
NDDVGITWRYSFSKAEVELSTLVHPVARKCLLALKMISKNHLQPTARWLK
SYHLKTVLFHTLENTPNEFWNERSAEDCFSHFVGNLRFAVERRHLQHYWI
STINLFDIDAASPRSFPRLLRKLDCIVRNPHWYIRIKPNQKDNEQPEDNE
QPEDNETTTREHSEDDEIELVENMEFEDFENV Run BLAST on NCBI transcript from alignment at sc0000067:144102..145438 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006545 ID=TCONS_00006545|Name=TCONS_00006545|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at sc0000067:144102..145438 (Clytia hemisphaerica)
GCTGAAATCTAACTTTATGCACAAGGGAGGAGAGATGTTTAGGTATGCTC
TTGAACAACGGTTCAATGGACAGCCTATTGATATCTTTTTCACTGGTAGT
GCGGTGGAAAGGTTCGGCCTGCCAACTTCTTCGGATTGGTATAATGATGT
GCTTCGTAAGATTCCGATCGATTACGCACTCTTTACAGATTTCGATCTGA
TGTTTAGTTTCAAGCATTTCATAGCATCTGAGGATTTAACGAATGAGACT
GCTCACTTTCGAGCAATATCCTCAGATCCTCGCATTGATCCTGGTTTTGT
GTTACTAAAACCCACTTCATCTGGTATATCTCTTCTTAACGATGAAACAT
TGAACGAACTGAAGCCAGAGTTTTGTGGCTTGTTTACTACTTACCCTGAT
GTTCAATTTTTAAACGCTTCAAAAATTAAAGATATTCTCTACGAAGTTGT
TTCGCAAACACCAATGGAATCCTACCCGCAAGGTACCAATTTCTTTTCAG
CCTTCTCAACAGCACTTGTCGAAAAAGAAGGCCCTGCGGTCAACGTTATG
ATTGGAACTTCGAATTTTAataattgttgttgttttgttatACATAACAA
TGGTTTCCTCGCTGACTTTACATTCAGTGTGAAAGCTGATTGGCCGTCCC
TTTGTGATTGGAAGAGTCGTTCCCAGCGTTTTTGGCCCAGTCTTCAAGAT
GTTGAGAAAATCCTTGGGATGGGTTGTCACGTAGTACCAAAATCTCAACC
GAACGATGACGTAGGAATCACATGGAGGTACTCATTTTCCAAAGCGGAAG
TCGAACTCTCCACGTTAGTCCATCCAGTAGCAAGAAAATGTCTTTTGGCT
TTGAAAATGATATCAAAGAATCATCTACAACCTACTGCACGTTGGTTGAA
ATCTTATCACCTGAAGACTGTTCTGTTTCATACTTTAGAAAATACGCCCA
ATGAATTTTGGAATGAAAGGAGTGCTGAAGATTGTTTTTCTCACTTTGTT
GGCAACTTAAGGTTTGCTGTTGAACGCAGACATCTGCAACACTACTGGAT
TTCCACCATTAATTTGTTTGATATTGATGCAGCTTCCCCTCGAAGCTTTC
CTCGTTTACTTCGCAAGCTTGACTGCATCGTGAGGAATCCACACTGGTAT
ATTCGAATAAAACCTAATCAGAAGGATAACGAACAACCGGAAGATAACGA
ACAACCGGAAGATAACGAGACGACAACTCGTGAACATTCAGAAGATGACG
AAATTGAACTCGTAGAAAACATGGagtttgaagattttgaaaatgtttag
aGTGAATATTTGTAGGGCTTTTTACGGTTATAAGTTT Coding sequence (CDS) from alignment at sc0000067:144102..145438 >TCONS_00006545 ID=TCONS_00006545|Name=TCONS_00006545|organism=Clytia hemisphaerica|type=CDS|length=1299bp|location=Sequence derived from alignment at sc0000067:144102..145438 (Clytia hemisphaerica)
CTGAAATCTAACTTTATGCACAAGGGAGGAGAGATGTTTAGGTATGCTCT
TGAACAACGGTTCAATGGACAGCCTATTGATATCTTTTTCACTGGTAGTG
CGGTGGAAAGGTTCGGCCTGCCAACTTCTTCGGATTGGTATAATGATGTG
CTTCGTAAGATTCCGATCGATTACGCACTCTTTACAGATTTCGATCTGAT
GTTTAGTTTCAAGCATTTCATAGCATCTGAGGATTTAACGAATGAGACTG
CTCACTTTCGAGCAATATCCTCAGATCCTCGCATTGATCCTGGTTTTGTG
TTACTAAAACCCACTTCATCTGGTATATCTCTTCTTAACGATGAAACATT
GAACGAACTGAAGCCAGAGTTTTGTGGCTTGTTTACTACTTACCCTGATG
TTCAATTTTTAAACGCTTCAAAAATTAAAGATATTCTCTACGAAGTTGTT
TCGCAAACACCAATGGAATCCTACCCGCAAGGTACCAATTTCTTTTCAGC
CTTCTCAACAGCACTTGTCGAAAAAGAAGGCCCTGCGGTCAACGTTATGA
TTGGAACTTCGAATTTTAataattgttgttgttttgttatACATAACAAT
GGTTTCCTCGCTGACTTTACATTCAGTGTGAAAGCTGATTGGCCGTCCCT
TTGTGATTGGAAGAGTCGTTCCCAGCGTTTTTGGCCCAGTCTTCAAGATG
TTGAGAAAATCCTTGGGATGGGTTGTCACGTAGTACCAAAATCTCAACCG
AACGATGACGTAGGAATCACATGGAGGTACTCATTTTCCAAAGCGGAAGT
CGAACTCTCCACGTTAGTCCATCCAGTAGCAAGAAAATGTCTTTTGGCTT
TGAAAATGATATCAAAGAATCATCTACAACCTACTGCACGTTGGTTGAAA
TCTTATCACCTGAAGACTGTTCTGTTTCATACTTTAGAAAATACGCCCAA
TGAATTTTGGAATGAAAGGAGTGCTGAAGATTGTTTTTCTCACTTTGTTG
GCAACTTAAGGTTTGCTGTTGAACGCAGACATCTGCAACACTACTGGATT
TCCACCATTAATTTGTTTGATATTGATGCAGCTTCCCCTCGAAGCTTTCC
TCGTTTACTTCGCAAGCTTGACTGCATCGTGAGGAATCCACACTGGTATA
TTCGAATAAAACCTAATCAGAAGGATAACGAACAACCGGAAGATAACGAA
CAACCGGAAGATAACGAGACGACAACTCGTGAACATTCAGAAGATGACGA
AATTGAACTCGTAGAAAACATGGagtttgaagattttgaaaatgtttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006545-exon-sc0000067-1491911889:144102..145438 | TCONS_00006545-exon-sc0000067-1491911889:144102..145438 | Clytia hemisphaerica | exon |
| TCONS_00006545-exon-sc0000067-1510915933:144102..145438 | TCONS_00006545-exon-sc0000067-1510915933:144102..145438 | Clytia hemisphaerica | exon |
| TCONS_00006545-exon-sc0000067-1575043694:144102..145438 | TCONS_00006545-exon-sc0000067-1575043694:144102..145438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:144102..145438 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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