TCONS_00006542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006542
Unique NameTCONS_00006542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006542 ID=TCONS_00006542|Name=TCONS_00006542|organism=Clytia hemisphaerica|type=transcript|length=389bp
NNAGGATTCTGAAAAGCATTCTCCTTTCCGAAGGGAATCTAAACACATTT
TTGGATGAAAGTCCTTGCATTTAGTTCCAAGGTTACATCCTCTTGGTTGC
CTTGTTCTATGTTGTGTGAACTTGCGACACATTTTAGGGTGAGTGTAGTT
GCATTCCTTTCCTTTTAGGCCATGCTTGCATGTtccatttttgtaaaatt
tgcagaTTTGGGATTTCTTTTCATTATCTTTGATTTCGCCTCttcttgtt
ttgttggtttCGTCAGCTTCAGTATTTATTGGATGATGGTTGTTCTGAGT
TTGGGATGTACTTTTTGTACGTTTTTTACGCTTACTATTCCCTTCTTCAT
CACTTGGAATGGTAGTAACTTTACAGGGATCGCAAATNN
Run BLAST on NCBI

protein sequence of TCONS_00006542-protein

>TCONS_00006542-protein ID=TCONS_00006542-protein|Name=TCONS_00006542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
ICDPCKVTTIPSDEEGNSKRKKRTKSTSQTQNNHHPINTEADETNKTRRG
EIKDNEKKSQICKFYKNGTCKHGLKGKECNYTHPKMCRKFTQHRTRQPRG
CNLGTKCKDFHPKMCLDSLRKGECFSESX
Run BLAST on NCBI

transcript from alignment at sc0000067:92398..92786

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006542 ID=TCONS_00006542|Name=TCONS_00006542|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0000067:92398..92786 (Clytia hemisphaerica)
NNATTTGCGATCCCTGTAAAGTTACTACCATTCCAAGTGATGAAGAAGGG
AATAGTAAGCGTAAAAAACGTACAAAAAGTACATCCCAAACTCAGAACAA
CCATCATCCAATAAATACTGAAGCTGACGaaaccaacaaaacaagaaGAG
GCGAAATCAAAGATAATGAAAAGAAATCCCAAAtctgcaaattttacaaa
aatggaACATGCAAGCATGGCCTAAAAGGAAAGGAATGCAACTACACTCA
CCCTAAAATGTGTCGCAAGTTCACACAACATAGAACAAGGCAACCAAGAG
GATGTAACCTTGGAACTAAATGCAAGGACTTTCATCCAAAAATGTGTTTA
GATTCCCTTCGGAAAGGAGAATGCTTTTCAGAATCCTNN

Coding sequence (CDS) from alignment at sc0000067:92398..92786

>TCONS_00006542 ID=TCONS_00006542|Name=TCONS_00006542|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000067:92398..92786 (Clytia hemisphaerica)
ATTTGCGATCCCTGTAAAGTTACTACCATTCCAAGTGATGAAGAAGGGAA
TAGTAAGCGTAAAAAACGTACAAAAAGTACATCCCAAACTCAGAACAACC
ATCATCCAATAAATACTGAAGCTGACGaaaccaacaaaacaagaaGAGGC
GAAATCAAAGATAATGAAAAGAAATCCCAAAtctgcaaattttacaaaaa
tggaACATGCAAGCATGGCCTAAAAGGAAAGGAATGCAACTACACTCACC
CTAAAATGTGTCGCAAGTTCACACAACATAGAACAAGGCAACCAAGAGGA
TGTAACCTTGGAACTAAATGCAAGGACTTTCATCCAAAAATGTGTTTAGA
TTCCCTTCGGAAAGGAGAATGCTTTTCAGAATCCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003700XLOC_003700Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006542-exon-sc0000067-1491911889:92398..92786TCONS_00006542-exon-sc0000067-1491911889:92398..92786Clytia hemisphaericaexon
TCONS_00006542-exon-sc0000067-1510915933:92398..92786TCONS_00006542-exon-sc0000067-1510915933:92398..92786Clytia hemisphaericaexon
TCONS_00006542-exon-sc0000067-1575043694:92398..92786TCONS_00006542-exon-sc0000067-1575043694:92398..92786Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006542-proteinTCONS_00006542-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:92398..92786 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.10468	4.02106	2.59024	3.82495	2.42604	1.15888	1.88178	1.44787	3.33381	3.06954	1.88052	3.1337	1.6112	1.56499	1.23111	1.32117	1.33165	2.64706	0.261687	0.31404	1.16215	2.7013	1.53526	0.616371	3.38586	3.4122	2.13627	0	0.49562	0.624002
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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