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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006540 ID=TCONS_00006540|Name=TCONS_00006540|organism=Clytia hemisphaerica|type=transcript|length=1643bp
GACGGCGCTATGTGAACCACAAGTAAAACTGAATTTATGGAAACCTTTTT
TTATATGGTAcaattttcatcatcatcattgtaAAACTATAGTTGCTTTT
TTCATGTTTCTTCACTCAGGCGATGAAGTTGGGTCGAATTTTCCAGTCAC
AGATTCCAATTCCATACTTGGAAACACTGGTAGCATTGTTGTCACTGGTC
AACAACCCATACCTGTTGATGCTTCTCTTTGAAGTTCATATGTGTCAACA
ATCACCCCCGATGCTATTGTTTGTGGCGAGATGTCAAATAAAATCGAGAA
AGAGTCCTCCTTTTTTAACCTTCCTCCTTTTCGTAATAATTACCataatt
tggcaaaaaaaaaaagtgatatAAATGtgattgaattttttatatTCCAT
CAAATTCAATCATCGTGAGAACTTATTACACCTAACAACATTGTTACTCA
TAATCTTTACTCACCTTTCGTTTGTAACCGGAACAAACTGGACCATTTTT
GGCGTTTTTAACTAATTTTATGTCAAAATCCCAAAAGCTATATTTTTGAT
TCTTAACAAGCCACTGAAGAATGCACCACTGCGTATGATTTTtctttcta
atttattttttcataaatgtcctgaaaatttttccgaaatgTAGGTTTAT
TATTTCGGGTCATTAACTAGACTAAGTGACCATTTGAAGAGATTTTTAAG
CatagatttttttctatgaTATCCACGATTTTTTCTtatattatcattat
tattattattattattattattaatattgTCAAAGATTTCTACTTGCATA
GATTTATGAAGAAAAgcgtttagtttttttttgagcttttttttatttta
aaattgaaaaaattcactccaGGCCGATGATTTCAATACTGTTTTTTAAC
TGATGAAAGAATTTGCATTCGATACCTTTTGTTATAATTGCTTattagaa
aaaattgaatagggggtgaaggatataacaattttcagtgatttaccccc
cggacaagcatcagttgacctcccggacaacccaaattacccccggacag
agcaaatttacccaacggacaaggcaaattttgatgatttttcgctaccc
gcggacaatatatcctccaccccccatgtacggacattttctggaagagc
ccattgctcTGAATAAAGATATGGAATAAAATTTACAACTCGTTTGAAAG
ATAAATTTGAAAGGCTTTTTTACCGAGAGCAAAGATTTTCATGACACGCT
GTATCTCGATTCAGTCCTATAGAAATTGTGAATGAATATTATGTAATCCA
AAAATTATTCAATATATTTTCGGTGCTGGACAAATTTTggatgaaagatt
tttttaaacataattcTACTAGACAgattagaaaatagaaattacaaaaa
gggatgtttaaacaaaataaataataatgttttgtttgttatactttgtt
ttcttgtgtatataatataataatttaccatttttcataataattataat
aattattcctttgtttttgtttgtttattctATTAAGCCTAAgggtgatt
ttctttttcaaaacttcagttgagttatgGGCTCTAGTTTTTACAGAAAC
ACCCATTTTTATAGTTTCTAGAAATTGTGAAAGTGAGCATGAN Run BLAST on NCBI transcript from alignment at sc0000067:767219..769088- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006540 ID=TCONS_00006540|Name=TCONS_00006540|organism=Clytia hemisphaerica|type=transcript|length=1870bp|location=Sequence derived from alignment at sc0000067:767219..769088- (Clytia hemisphaerica)
GACGGCGCTATGTGAACCACAAGTAAAACTGAATTTATGGAAACCTTTTT
TTATATGGTACAATTTTCATCATCATCATTGTAAAACTATAGTTGCTTTT
TTCATGTTTCTTCACTCAGGCGATGAAGTTGGGTCGAATTTTCCAGTCAC
AGATTCCAATTCCATACTTGGAAACACTGGTAGCATTGTTGTCACTGGTC
AACAACCCATACCTGTTGATGCTTCTCTTTGAAGTTCATATGTGTGAGTG
TTTCAAATTTTTGTTGTTGTTGTTAAACATTATTTTTACCATTTTTTTGA
AGATCAAAAGTTATTCCCTATCTCTATATTTTGGTCATTGTTCGAGTGTC
TTAAAATTGTCTTCTTAGATCCGTTAGCATTTTTAAAGGTCAAATAGTTC
CCCCCTAGTCACCATTTTGCTCTTTGTGACGAAAAGGATTTTAAATTCAT
TATCGATCTATCCTTTTCAGGTCAACAATCACCCCCGATGCTATTGTTTG
TGGCGAGATGTCAAATAAAATCGAGAAAGAGTCCTCCTTTTTTAACCTTC
CTCCTTTTCGTAATAATTACCATAATTTGGCAAAAAAAAAAAGTGATATA
AATGTGATTGAATTTTTTATATTCCATCAAATTCAATCATCGTGAGAACT
TATTACACCTAACAACATTGTTACTCATAATCTTTACTCACCTTTCGTTT
GTAACCGGAACAAACTGGACCATTTTTGGCGTTTTTAACTAATTTTATGT
CAAAATCCCAAAAGCTATATTTTTGATTCTTAACAAGCCACTGAAGAATG
CACCACTGCGTATGATTTTTCTTTCTAATTTATTTTTTCATAAATGTCCT
GAAAATTTTTCCGAAATGTAGGTTTATTATTTCGGGTCATTAACTAGACT
AAGTGACCATTTGAAGAGATTTTTAAGCATAGATTTTTTTCTATGATATC
CACGATTTTTTCTTATATTATCATTATTATTATTATTATTATTATTATTA
ATATTGTCAAAGATTTCTACTTGCATAGATTTATGAAGAAAAGCGTTTAG
TTTTTTTTTGAGCTTTTTTTTATTTTAAAATTGAAAAAATTCACTCCAGG
CCGATGATTTCAATACTGTTTTTTAACTGATGAAAGAATTTGCATTCGAT
ACCTTTTGTTATAATTGCTTATTAGAAAAAATTGAATAGGGGGTGAAGGA
TATAACAATTTTCAGTGATTTACCCCCCGGACAAGCATCAGTTGACCTCC
CGGACAACCCAAATTACCCCCGGACAGAGCAAATTTACCCAACGGACAAG
GCAAATTTTGATGATTTTTCGCTACCCGCGGACAATATATCCTCCACCCC
CCATGTACGGACATTTTCTGGAAGAGCCCATTGCTCTGAATAAAGATATG
GAATAAAATTTACAACTCGTTTGAAAGATAAATTTGAAAGGCTTTTTTAC
CGAGAGCAAAGATTTTCATGACACGCTGTATCTCGATTCAGTCCTATAGA
AATTGTGAATGAATATTATGTAATCCAAAAATTATTCAATATATTTTCGG
TGCTGGACAAATTTTGGATGAAAGATTTTTTTAAACATAATTCTACTAGA
CAGATTAGAAAATAGAAATTACAAAAAGGGATGTTTAAACAAAATAAATA
ATAATGTTTTGTTTGTTATACTTTGTTTTCTTGTGTATATAATATAATAA
TTTACCATTTTTCATAATAATTATAATAATTATTCCTTTGTTTTTGTTTG
TTTATTCTATTAAGCCTAAGGGTGATTTTCTTTTTCAAAACTTCAGTTGA
GTTATGGGCTCTAGTTTTTACAGAAACACCCATTTTTATAGTTTCTAGAA
ATTGTGAAAGTGAGCATGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006540-exon-sc0000067-1575043694:768846..769088 | TCONS_00006540-exon-sc0000067-1575043694:768846..769088 | Clytia hemisphaerica | exon |
| TCONS_00006540-exon-sc0000067-1575043694:767219..768618 | TCONS_00006540-exon-sc0000067-1575043694:767219..768618 | Clytia hemisphaerica | exon |
| TCONS_00006540-exon-sc0000067-1510915933:768846..769088 | TCONS_00006540-exon-sc0000067-1510915933:768846..769088 | Clytia hemisphaerica | exon |
| TCONS_00006540-exon-sc0000067-1510915933:767219..768618 | TCONS_00006540-exon-sc0000067-1510915933:767219..768618 | Clytia hemisphaerica | exon |
| TCONS_00006540-exon-sc0000067-1491911889:768846..769088 | TCONS_00006540-exon-sc0000067-1491911889:768846..769088 | Clytia hemisphaerica | exon |
| TCONS_00006540-exon-sc0000067-1491911889:767219..768618 | TCONS_00006540-exon-sc0000067-1491911889:767219..768618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:767219..769088 - |
Blast
The following BLAST results are available for this feature:
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