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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006538 ID=TCONS_00006538|Name=TCONS_00006538|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CTTAGCTTTAAAACTTCacagaagaagaaagaaaaaaatgaaggttgTTT
CTCTGATCTTCGTTATTTCACTGACAGCAATATCATTACCTGCCAACATC
ATCTCACTTATCCTTCTGATAAACGGCCGACGGAAATTCAAGCGGAAATG
GTTTATTTTGGTGAACTTGATAGTAGCTCACCTAATGCAGACGCTATTCT
CCTTCCCAATTTTAATCAATAGTTTATTTCATTCGAAATGGGTGTTTTCG
ATGGATTTGTGTCGAGTGGACGCTTTTGTGATGGCTGTGACCGGCTTTGA
AATCATCTTTACTCATCTTGTGATTACAATCGAAAGGTCTGTGAAACTAC
ACAATCCATTAACAGAACACAAAATTATTCCAACGAGCCATCTAAAAATG
ATCTCAACAAGTACGTGGCTGGCAGCCATTTTATTTGCGTGCCCTCCAAT
GATTGGCTGGTCAAAATATGTATTAAATGGCGGAATGCATTGCGGGAGTG
ATTGGTCAAAAAGCGCGGGAAATATCAGTTATTTGGTGACATGTATCATA
TTAGGCTTTGCTTTGCCATATGTTATCATTATGATATTGAATATCGCTTT
CTTAAAACGTGTCCGCGAATTGAATAAAACACATCCAGTGAATGTGTCTG
TCTCATTGTTTGTTATTATTTCCATGACAATATTCACTATAGCCTGGATT
CCATTAGTAACATGTGGTCTAGTGGAGCTACTCTTTGATATAAAGATACC
gtttgagattgagattgcaTCCATGGTGACAAAGATAACAACAGTGACAG
ATACCTTTTTATTCTTGATTTTGAATAAGAACTTCCATGAAGTTGCTCGA
CAAACGTATAGAAGGTACACTTCATCGTTTATGAAAGATACAATTATCAA
GTCTTAATACGCATCACCCAATTCTTATTTTGGGCActagtgtgtatttt
acagaccagaacaaaTAATTAGAATCATGCATTGATTGgatgtatcattg
ttttttaaaCAATGTTTAagaatttcttgaaaatgtcatttcttttttgt
tgtcttTTCAACCAAGGAGCTTGTTTCAACCGCTTTCTTTTGCGAATTGA
ATAGCCAACTTTGTGCAGAGCAGACCACTGATCATTTGATACAGTAGAAA
GTAGTTAACGCTAAAAGATGCCCTGATTTCGTGCAGAGCAAAGCTGCTTA
ATATAGCCTAGCAAGTAGCTGATGCCCCTATTGTAAGGGATGGGTTAAAT
AATCACGCCCGCTTAGCAATTTTTGGATAGGAAGTGCTGGACACACTCGA
TTTATAAAATACCGTATATTCCGCCCAAAGATAGGCCTTTATAATCGGAC
CCTTGCAGTGCAGAGAAAATAAAGCCAAATTCGGGTGAATATTTTGgtac
attttcttgaaattgttaCTCCATTCGAAGGCAAAAATTCGACAGATTTT
TTcaacccttagagtgcactttctCTCATCTTTGCTCGTTTCGACCCGTA
CAGTACACTTTTTGAAGCCTGAAAACGCACCCTTAAGCATTTCACATGAT
CTTGGTCGCTTTCCTTGAG Run BLAST on NCBI protein sequence of TCONS_00006538-protein >TCONS_00006538-protein ID=TCONS_00006538-protein|Name=TCONS_00006538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
LALKLHRRRKKKMKVVSLIFVISLTAISLPANIISLILLINGRRKFKRKW
FILVNLIVAHLMQTLFSFPILINSLFHSKWVFSMDLCRVDAFVMAVTGFE
IIFTHLVITIERSVKLHNPLTEHKIIPTSHLKMISTSTWLAAILFACPPM
IGWSKYVLNGGMHCGSDWSKSAGNISYLVTCIILGFALPYVIIMILNIAF
LKRVRELNKTHPVNVSVSLFVIISMTIFTIAWIPLVTCGLVELLFDIKIP
FEIEIASMVTKITTVTDTFLFLILNKNFHEVARQTYRRYTSSFMKDTIIK
S Run BLAST on NCBI transcript from alignment at sc0000067:694612..697630- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006538 ID=TCONS_00006538|Name=TCONS_00006538|organism=Clytia hemisphaerica|type=transcript|length=3019bp|location=Sequence derived from alignment at sc0000067:694612..697630- (Clytia hemisphaerica)
CTTAGCTTTAAAACTTCACAGAAGAAGAAAGAAAAAAATGAAGGTTGTTT
CTCTGATCTTCGTTATTTCACTGACAGCAATATCATTACCTGCCAACATC
ATCTCACTTATCCTTCTGATAAACGGCCGACGGAAATTCAAGCGGAAATG
GTTTATTTTGGTGAACTTGATAGTAGCTCACCTAATGCAGACGCTATTCT
CCTTCCCAATTTTAATCAATAGTTTATTTCATTCGAAATGGGTGTTTTCG
ATGGATTTGTGTCGAGTGGACGCTTTTGTGATGGCTGTGACCGGCTTTGA
AATCATCTTTACTCATCTTGTGATTACAATCGAAAGGTAACTGGCTGATT
ATTATTGTCTCTATACCAGAACCCAGTTGAGTTTAAATTCTGATCCTTTC
GAATGACGGATTGGATCTAATACTTCCTCTCTGTCATTGAGAAACCTTGG
TGAAATGCTTTTCATAATTCGAAGCTATCATGTAATTCGAACATTTTTTT
GTGATCATGTAATTCGAACATTTTTTTGTGAAAAGCACAGGCCGAAAACG
TATATCGACCTGTGCCGACCAATCCAGATTANGGAAAAATCTTTTCCTTA
AAACTATCTGTTTCCCCAGATCAATATTTCTAGGAGATGACATAATAAAT
TGGGAAACAGAGATCTGATATCTATTTTAGGTTTTGAGGAGAAACAGATC
TTCATTTCTAGGAATAAGATTTTTGACAACAGATCAAATTTTCCGAAACA
GATGTTTAAAACAAGGTCCTCGCTGGATGCTTTCGATCTCTGCCCCTTTA
AAACTCAACAAAGTCAACGAGAATATTTGTCTAAAGAGAACAGCTTTCAG
TATCCTATTTAAATGATTATTCTAAATTGTTGAAGAATTTGATGATGGTC
TAATTAGGGACATTGAAGTCTTTATAATCAGAAAAACCGAATCAAAATAA
TTTAAAGAAGATTGTATTAAGCACAGAATAAGGTATGGTACCAGTCGTTA
TAAAACCAATTTCATTCTTATCTTAGCTTTAAAACTTCACAGAAGAAGAA
AGAAAAAAATGAAGGTTGTTTCTCTGCTCTTCGTTATTTCACTGACAGCA
ATATCATTACCTGCCAACATCATCTCACTTATCCTTCTGATAAACGGCCG
ACGGAAATTCAAGCGGAAATGGTTTATTTTGGTGAACTTGATAGTAGCTC
ACCTAATGCAGACGCTATTCTCCTTCCCAATTTTAATCAATAGTTTATTT
CATTCGAAATGGGTGTTTTCGATGGATTTGTGTCGAGTGGACGCTTTTGT
GATGGCTGTGACCGGCTTTGAAATCATCTTTACTCATCTTGTGATTACAA
TCGAAAGGTAACTGGCTGATTATTATTGTCTCTATACCAGAACCCAGTTG
AGTTTAAATTCTGATCCTTTCGAATGACGGATTGGATCTAATACTTCCTC
TCTGTCATTGAGAAACCTTGGTGAAATGCTTTTCATAATTCGAAGCTATC
ATGTAATTCGAACATTTTTTTGTGATCATGTAATTCGAACATTTTTTTGT
GAAAAGCACAGGCCGAAAACGTATATCGACCTGTGCCGACCAATCCAGAT
TATATTCAGCGCGTACCAATCAACGCAGAGAAAAGTAACCATGACGACAA
TCCAAGATCTATTTCTATTATTGGTCTTCAGAGGTTGATATGTTCTTTGA
AAACTCAACCTCTGATACTCAGGGTAGAACATTTTGGATTCCCCATCCAA
TTAATTTTTGCTATCATCTTTTTGATTATTTTATAGGTCTGTGAAACTAC
ACAATCCATTAACAGAACACAAAATTATTCCAACGAGCCATCTAAAAATG
ATCTCAACAAGTACGTGGCTGGCAGCCATTTTATTTGCGTGCCCTCCAAT
GATTGGCTGGTCAAAATATGTATTAAATGGCGGAATGCATTGCGGGAGTG
ATTGGTCAAAAAGCGCGGGAAATATCAGTTATTTGGTGACATGTATCATA
TTAGGCTTTGCTTTGCCATATGTTATCATTATGATATTGAATATCGCTTT
CTTAAAACGTGTCCGCGAATTGAATAAAACACATCCAGTGAATGTGTCTG
TCTCATTGTTTGTTATTATTTCCATGACAATATTCACTATAGCCTGGATT
CCATTAGTAACATGTGGTCTAGTGGAGCTACTCTTTGATATAAAGATACC
GTTTGAGATTGAGATTGCATCCATGGTGACAAAGATAACAACAGTGACAG
ATACCTTTTTATTCTTGATTTTGAATAAGAACTTCCATGAAGTTGCTCGA
CAAACGTATAGAAGGTACACTTCATCGTTTATGAAAGATACAATTATCAA
GTCTTAATACGCATCACCCAATTCTTATTTTGGGCACTAGTGTGTATTTT
ACAGACCAGAACAAATAATTAGAATCATGCATTGATTGGATGTATCATTG
TTTTTTAAACAATGTTTAAGAATTTCTTGAAAATGTCATTTCTTTTTTGT
TGTCTTTTCAACCAAGGAGCTTGTTTCAACCGCTTTCTTTTGCGAATTGA
ATAGCCAACTTTGTGCAGAGCAGACCACTGATCATTTGATACAGTAGAAA
GTAGTTAACGCTAAAAGATGCCCTGATTTCGTGCAGAGCAAAGCTGCTTA
ATATAGCCTAGCAAGTAGCTGATGCCCCTATTGTAAGGGATGGGTTAAAT
AATCACGCCCGCTTAGCAATTTTTGGATAGGAAGTGCTGGACACACTCGA
TTTATAAAATACCGTATATTCCGCCCAAAGATAGGCCTTTATAATCGGAC
CCTTGCAGTGCAGAGAAAATAAAGCCAAATTCGGGTGAATATTTTGGTAC
ATTTTCTTGAAATTGTTACTCCATTCGAAGGCAAAAATTCGACAGATTTT
TTCAACCCTTAGAGTGCACTTTCTCTCATCTTTGCTCGTTTCGACCCGTA
CAGTACACTTTTTGAAGCCTGAAAACGCACCCTTAAGCATTTCACATGAT
CTTGGTCGCTTTCCTTGAG Coding sequence (CDS) from alignment at sc0000067:694612..697630- >TCONS_00006538 ID=TCONS_00006538|Name=TCONS_00006538|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000067:694612..697630- (Clytia hemisphaerica)
GTCTGTGAAACTACACAATCCATTAACAGAACACAAAATTATTCCAACGA
GCCATCTAAAAATGATCTCAACAAGTACGTGGCTGGCAGCCATTTTATTT
GCGTGCCCTCCAATGATTGGCTGGTCAAAATATGTATTAAATGGCGGAAT
GCATTGCGGGAGTGATTGGTCAAAAAGCGCGGGAAATATCAGTTATTTGG
TGACATGTATCATATTAGGCTTTGCTTTGCCATATGTTATCATTATGATA
TTGAATATCGCTTTCTTAAAACGTGTCCGCGAATTGAATAAAACACATCC
AGTGAATGTGTCTGTCTCATTGTTTGTTATTATTTCCATGACAATATTCA
CTATAGCCTGGATTCCATTAGTAACATGTGGTCTAGTGGAGCTACTCTTT
GATATAAAGATACCGTTTGAGATTGAGATTGCATCCATGGTGACAAAGAT
AACAACAGTGACAGATACCTTTTTATTCTTGATTTTGAATAAGAACTTCC
ATGAAGTTGCTCGACAAACGTATAGAAGGTACACTTCATCGTTTATGAAA
GATACAATTATCAAGTCTTAATTAGCTTTAAAACTTCACAGAAGAAGAAA
GAAAAAAATGAAGGTTGTTTCTCTGATCTTCGTTATTTCACTGACAGCAA
TATCATTACCTGCCAACATCATCTCACTTATCCTTCTGATAAACGGCCGA
CGGAAATTCAAGCGGAAATGGTTTATTTTGGTGAACTTGATAGTAGCTCA
CCTAATGCAGACGCTATTCTCCTTCCCAATTTTAATCAATAGTTTATTTC
ATTCGAAATGGGTGTTTTCGATGGATTTGTGTCGAGTGGACGCTTTTGTG
ATGGCTGTGACCGGCTTTGAAATCATCTTTACTCATCTTGTGATTACAAT
CGAAAGGTCTGTGAAACTACACAATCCATTAACAGAACACAAAATTATTC
CAACGAGCCATCTAAAAATGATCTCAACAAGTACGTGGCTGGCAGCCATT
TTATTTGCGTGCCCTCCAATGATTGGCTGGTCAAAATATGTATTAAATGG
CGGAATGCATTGCGGGAGTGATTGGTCAAAAAGCGCGGGAAATATCAGTT
ATTTGGTGACATGTATCATATTAGGCTTTGCTTTGCCATATGTTATCATT
ATGATATTGAATATCGCTTTCTTAAAACGTGTCCGCGAATTGAATAAAAC
ACATCCAGTGAATGTGTCTGTCTCATTGTTTGTTATTATTTCCATGACAA
TATTCACTATAGCCTGGATTCCATTAGTAACATGTGGTCTAGTGGAGCTA
CTCTTTGATATAAAGATACCGTTTGAGATTGAGATTGCATCCATGGTGAC
AAAGATAACAACAGTGACAGATACCTTTTTATTCTTGATTTTGAATAAGA
ACTTCCATGAAGTTGCTCGACAAACGTATAGAAGGTACACTTCATCGTTT
ATGAAAGATACAATTATCAAGTCTTAATTAGCTTTAAAACTTCACAGAAG
AAGAAAGAAAAAAATGAAGGTTGTTTCTCTGATCTTCGTTATTTCACTGA
CAGCAATATCATTACCTGCCAACATCATCTCACTTATCCTTCTGATAAAC
GGCCGACGGAAATTCAAGCGGAAATGGTTTATTTTGGTGAACTTGATAGT
AGCTCACCTAATGCAGACGCTATTCTCCTTCCCAATTTTAATCAATAGTT
TATTTCATTCGAAATGGGTGTTTTCGATGGATTTGTGTCGAGTGGACGCT
TTTGTGATGGCTGTGACCGGCTTTGAAATCATCTTTACTCATCTTGTGAT
TACAATCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006538-exon-sc0000067-1575043694:697295..697630 | TCONS_00006538-exon-sc0000067-1575043694:697295..697630 | Clytia hemisphaerica | exon |
| TCONS_00006538-exon-sc0000067-1575043694:694612..695844 | TCONS_00006538-exon-sc0000067-1575043694:694612..695844 | Clytia hemisphaerica | exon |
| TCONS_00006538-exon-sc0000067-1510915933:697295..697630 | TCONS_00006538-exon-sc0000067-1510915933:697295..697630 | Clytia hemisphaerica | exon |
| TCONS_00006538-exon-sc0000067-1510915933:694612..695844 | TCONS_00006538-exon-sc0000067-1510915933:694612..695844 | Clytia hemisphaerica | exon |
| TCONS_00006538-exon-sc0000067-1491911889:697295..697630 | TCONS_00006538-exon-sc0000067-1491911889:697295..697630 | Clytia hemisphaerica | exon |
| TCONS_00006538-exon-sc0000067-1491911889:694612..695844 | TCONS_00006538-exon-sc0000067-1491911889:694612..695844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:694612..697630 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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