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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006537 ID=TCONS_00006537|Name=TCONS_00006537|organism=Clytia hemisphaerica|type=transcript|length=1439bp
CGGAAATTCAAGCGGAAATGGTTTATTTTGGTGAACTTGATAGTAGCTCA
CCTAATGCAGACGCTATTCTCCTTCCCAATTTTAATCAATAGTTTATTTC
ATTCGAAATGGGTGTTTTCGATGGATTTGTGTCGAGTGGACGCTTTTGTG
ATGGCTGTGACCGGCTTTGAAATCATCTTTACTCATCTTGTGATTACAAT
CGAAAGGTCTGTGAAACTACACAATCCATTAACAGAACACAAAATTATTC
CAACGAGCCATCTAAAAATGATCTCAACAAGTACGTGGCTGGCAGCCATT
TTATTTGCGTGCCCTCCAATGATTGGCTGGTCAAAATATGTATTAAATGG
CGGAATGCATTGCGGGAGTGATTGGTCAAAAAGCGCGGGAAATATCAGTT
ATTTGGTGACATGTATCATATTAGGCTTTGCTTTGCCATATGTTATCATT
ATGATATTGAATATCGCTTTCTTAAAACGTGTCCGCGAATTGAATAAAAC
ACATCCAGTGAATGTGTCTGTCTCATTGTTTGTTATTATTTCCATGACAA
TATTCACTATAGCCTGGATTCCATTAGTAACATGTGGTCTAGTGGAGCTA
CTCTTTGATATAAAGATACCgtttgagattgagattgcaTCCATGGTGAC
AAAGATAACAACAGTGACAGATACCTTTTTATTCTTGATTTTGAATAAGA
ACTTCCATGAAGTTGCTCGACAAACGTATAGAAGGTACACTTCATCGTTT
ATGAAAGATACAATTATCAAGTCTTAATACGCATCACCCAATTCTTATTT
TGGGCActagtgtgtattttacagaccagaacaaaTAATTAGAATCATGC
ATTGATTGgatgtatcattgttttttaaaCAATGTTTAagaatttcttga
aaatgtcatttcttttttgttgtcttTTCAACCAAGGAGCTTGTTTCAAC
CGCTTTCTTTTGCGAATTGAATAGCCAACTTTGTGCAGAGCAGACCACTG
ATCATTTGATACAGTAGAAAGTAGTTAACGCTAAAAGATGCCCTGATTTC
GTGCAGAGCAAAGCTGCTTAATATAGCCTAGCAAGTAGCTGATGCCCCTA
TTGTAAGGGATGGGTTAAATAATCACGCCCGCTTAGCAATTTTTGGATAG
GAAGTGCTGGACACACTCGATTTATAAAATACCGTATATTCCGCCCAAAG
ATAGGCCTTTATAATCGGACCCTTGCAGTGCAGAGAAAATAAAGCCAAAT
TCGGGTGAATATTTTGgtacattttcttgaaattgttaCTCCATTCGAAG
GCAAAAATTCGACAGATTTTTTcaacccttagagtgcactttctCTCATC
TTTGCTCGTTTCGACCCGTACAGTACACTTTTTGAAGCCTGAAAACGCAC
CCTTAAGCATTTCACATGATCTTGGTCGCTTTCCTTGAG Run BLAST on NCBI transcript from alignment at sc0000067:694612..696479- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006537 ID=TCONS_00006537|Name=TCONS_00006537|organism=Clytia hemisphaerica|type=transcript|length=1868bp|location=Sequence derived from alignment at sc0000067:694612..696479- (Clytia hemisphaerica)
CGGAAATTCAAGCGGAAATGGTTTATTTTGGTGAACTTGATAGTAGCTCA
CCTAATGCAGACGCTATTCTCCTTCCCAATTTTAATCAATAGTTTATTTC
ATTCGAAATGGGTGTTTTCGATGGATTTGTGTCGAGTGGACGCTTTTGTG
ATGGCTGTGACCGGCTTTGAAATCATCTTTACTCATCTTGTGATTACAAT
CGAAAGGTAACTGGCTGATTATTATTGTCTCTATACCAGAACCCAGTTGA
GTTTAAATTCTGATCCTTTCGAATGACGGATTGGATCTAATACTTCCTCT
CTGTCATTGAGAAACCTTGGTGAAATGCTTTTCATAATTCGAAGCTATCA
TGTAATTCGAACATTTTTTTGTGATCATGTAATTCGAACATTTTTTTGTG
AAAAGCACAGGCCGAAAACGTATATCGACCTGTGCCGACCAATCCAGATT
ATATTCAGCGCGTACCAATCAACGCAGAGAAAAGTAACCATGACGACAAT
CCAAGATCTATTTCTATTATTGGTCTTCAGAGGTTGATATGTTCTTTGAA
AACTCAACCTCTGATACTCAGGGTAGAACATTTTGGATTCCCCATCCAAT
TAATTTTTGCTATCATCTTTTTGATTATTTTATAGGTCTGTGAAACTACA
CAATCCATTAACAGAACACAAAATTATTCCAACGAGCCATCTAAAAATGA
TCTCAACAAGTACGTGGCTGGCAGCCATTTTATTTGCGTGCCCTCCAATG
ATTGGCTGGTCAAAATATGTATTAAATGGCGGAATGCATTGCGGGAGTGA
TTGGTCAAAAAGCGCGGGAAATATCAGTTATTTGGTGACATGTATCATAT
TAGGCTTTGCTTTGCCATATGTTATCATTATGATATTGAATATCGCTTTC
TTAAAACGTGTCCGCGAATTGAATAAAACACATCCAGTGAATGTGTCTGT
CTCATTGTTTGTTATTATTTCCATGACAATATTCACTATAGCCTGGATTC
CATTAGTAACATGTGGTCTAGTGGAGCTACTCTTTGATATAAAGATACCG
TTTGAGATTGAGATTGCATCCATGGTGACAAAGATAACAACAGTGACAGA
TACCTTTTTATTCTTGATTTTGAATAAGAACTTCCATGAAGTTGCTCGAC
AAACGTATAGAAGGTACACTTCATCGTTTATGAAAGATACAATTATCAAG
TCTTAATACGCATCACCCAATTCTTATTTTGGGCACTAGTGTGTATTTTA
CAGACCAGAACAAATAATTAGAATCATGCATTGATTGGATGTATCATTGT
TTTTTAAACAATGTTTAAGAATTTCTTGAAAATGTCATTTCTTTTTTGTT
GTCTTTTCAACCAAGGAGCTTGTTTCAACCGCTTTCTTTTGCGAATTGAA
TAGCCAACTTTGTGCAGAGCAGACCACTGATCATTTGATACAGTAGAAAG
TAGTTAACGCTAAAAGATGCCCTGATTTCGTGCAGAGCAAAGCTGCTTAA
TATAGCCTAGCAAGTAGCTGATGCCCCTATTGTAAGGGATGGGTTAAATA
ATCACGCCCGCTTAGCAATTTTTGGATAGGAAGTGCTGGACACACTCGAT
TTATAAAATACCGTATATTCCGCCCAAAGATAGGCCTTTATAATCGGACC
CTTGCAGTGCAGAGAAAATAAAGCCAAATTCGGGTGAATATTTTGGTACA
TTTTCTTGAAATTGTTACTCCATTCGAAGGCAAAAATTCGACAGATTTTT
TCAACCCTTAGAGTGCACTTTCTCTCATCTTTGCTCGTTTCGACCCGTAC
AGTACACTTTTTGAAGCCTGAAAACGCACCCTTAAGCATTTCACATGATC
TTGGTCGCTTTCCTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006537-exon-sc0000067-1575043694:696274..696479 | TCONS_00006537-exon-sc0000067-1575043694:696274..696479 | Clytia hemisphaerica | exon |
| TCONS_00006537-exon-sc0000067-1575043694:694612..695844 | TCONS_00006537-exon-sc0000067-1575043694:694612..695844 | Clytia hemisphaerica | exon |
| TCONS_00006537-exon-sc0000067-1510915933:696274..696479 | TCONS_00006537-exon-sc0000067-1510915933:696274..696479 | Clytia hemisphaerica | exon |
| TCONS_00006537-exon-sc0000067-1510915933:694612..695844 | TCONS_00006537-exon-sc0000067-1510915933:694612..695844 | Clytia hemisphaerica | exon |
| TCONS_00006537-exon-sc0000067-1491911889:696274..696479 | TCONS_00006537-exon-sc0000067-1491911889:696274..696479 | Clytia hemisphaerica | exon |
| TCONS_00006537-exon-sc0000067-1491911889:694612..695844 | TCONS_00006537-exon-sc0000067-1491911889:694612..695844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:694612..696479 - |
Blast
The following BLAST results are available for this feature:
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