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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006534 ID=TCONS_00006534|Name=TCONS_00006534|organism=Clytia hemisphaerica|type=transcript|length=1149bp
AAACAACTTGTTATAAAAAATAACGAGATATGATTGGCCTattgaaaaca
attcaaaagtgacgtcaatcaaattctcaattttgattggttcatcAAAC
ATATTTAATATCTATAAAACAGTTTTCGGTAGCATATTTTATCAATCACT
CATTAAACCGACGAACAAGAGAGAACATCGTGAATCATCAGAAAGAAGTA
GACACAGAAACGACAAACGAGAACTATAAACGAGAACTACCGAacattta
ttagttttttttatcattcatTCAAATGACTTATACAACAAATCAAGAAG
TACCATCTTGGGATATTTATCAAACACAAGCTTCACCAATGTATGATTTA
AACTTACCAGAGGTTATCAGCGATACTGATTCGCAATGCTTTGATGTAAA
AGCTGAAGACCCTTACTTGCCAATGTCCAACGTAAATGCTTATCAGGCAC
ATCAAAACAATCCATCAATGCTCGCATCACCATCAATGAATATGCCGATC
CTATGCCGACCATACAACCCTTACTCACCAGTCTCGGCTATCCAATCAAT
GGCGTCGCCTTCACCCATGAACACTTACGCACATTCACCCGGCAACTCTT
CCACCTACTCCGCATCTCCTCTCAATTCACCACAACAACATTTCAGTCAA
GAAGATCTTATGATGCGTTACCGTATGCAGCAACACCCGATGATGGCGGC
TCCCGGATACGGACCCCGTCCAGTTGCTCAACCGGCCAGCGAATATGCAT
ACTACTATAACGAATATGGCATGAAACGCCGAAAGCGTGATGAAGAGCTT
TCACACGAAGAACTCGAGAAACGACGTGTCCGACGTGAACGCAACAAGCA
AGCAGCTTTACGTTGCCGCACACGAAGACGTGAACGAATCGACGCTCTAG
AGCAGGAAACAACACAAATTGAAGAAGACAACACACGTGTGGAGAAAGAA
ATTCGCGATCTCAAGAAACAATTAGATGAATTACAAAGTTTACTGAAGGA
GCATGATTGTCCAAAACAGTTACCCTTCTCTGGTAGCAATGCTTGAAGAA
TGGTCGAGAAGGAATTGGATTTTGAGAAGTGTGGATCCCATACGCGGATT
TAGAATAGAGATTGATCATCATGATCAAAAGTCCCCAACATTAGAGCAG Run BLAST on NCBI transcript from alignment at sc0000067:556623..560704- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006534 ID=TCONS_00006534|Name=TCONS_00006534|organism=Clytia hemisphaerica|type=transcript|length=4082bp|location=Sequence derived from alignment at sc0000067:556623..560704- (Clytia hemisphaerica)
AAACAACTTGTTATAAAAAATAACGAGATATGATTGGCCTATTGAAAACA
ATTCAAAAGTGACGTCAATCAAATTCTCAATTTTGATTGGTTCATCAAAC
ATATTTAATATCTATAAAACAGTTTTCGGTAGCATATTTTATCAATCACT
CATTAAACCGACGAACAAGAGAGAACATCGTGAATCATCAGAAAGAAGTA
GACACAGAAACGACAAACGAGAACTATAAACGAGAACTACCGAACATTTA
TTAGTTTTTTTTATCATTCATTCAAATGACTTATACAACAAATCAAGAAG
TACCATCTTGGGATATTTATCAAACACAAGCTTCACCAATGTATGATTTA
AACTTACCAGAGGTTATCAGCGATACTGATTCGCAATGCTTTGATGTAAA
AGCTGAAGACCCTTACTTGCCAATGTCCAACGTAAATGCTTATCAGGTAG
GGAACTTTCTTATATCTTTATTTTTTAGATACCTAATAGTAAAGGGTATT
GAACTTCTACTTTTGAATCTTCTAAACAATGTTCAAATTTTCAAAAATTA
TGTGATTATTCTTAAGTTGCTCAGAAATCAATTTTCTAGAACTTTCTTAT
CCTTTTGTTGCTTTGATCAAAAAATTTTTTTTGATGGTTTGATGAGATTT
TTTTTGCTTGTATCAGCAAATATTTGAAAAAAAAGAGGAAAATTGATTTC
TTCCATTTACAATTTGAAGAGGTTGCACGCGGCATGCATTGCATGTAAAT
CAATCTGTGCAAACTGGCATTTTTTATTGTTTTCGTATGTGAAAAAAAAT
CTCCTGTGTTTACGGAATAATTTATTTCGATCACATGTCAAAAAGCATGA
TTCGAATTTGACATTAATTAAAAAGACGGGGGTAAAAAAGTGGCATAATT
AAAAAGTTGTTAAAATTAAACGAAAAGATAAAAAGGCTCTTTTCACATAT
CATTATTTGAAAAAAAGATAAATTAATTGGGACCGGATATTATTCATACT
CGTTCTATTATTATATTGATATGAAAAATCACATTTAAGCATAGAACCTG
ATTTGTTAGAGTCATCATTCATACCTTAACTCTATTTGGTACCAGTCATT
GCTTGATGAGGTTATAGAGTTAGAAACAAACTTTAAAACGTGCTTGATAT
ACAGATCAAAAGTTGCGCTCTCTCCAGCACACACAACAAGATAAAGAAGT
TTGATTTTTTTTATGAAATAATTGTTTTGAGACTTCGTCATCGTTGTCAA
CTCATTTTGTCTTGGTCATCATCAAAAAAGAAAAGAAAAAAAATTCTTTT
TATTACAATTGAAAGTACATTTAAAAAGAAGTTTATTGGGATTTTTTGAT
TCATAATGGCAGTCGGGATTATAATGAATTCGAACATGGCTAATCGCGGA
GAGAGTTCATCTTCATCCTCAACGAACCCTTACGACCGCTCGCGTTTTAC
GCTCGATTTANTAAAAAGGCTCTTTTCACATATCATTATTTGAAAAAAAG
ATAAATTAATTGGGACCGGATATTATTCATACTCGTTCTATTATTATATT
GATATGAAAAATCACATTTAAGCATAGAACCTGATTTGTTAGAGTCATCA
TTCATACCTTAACTCTATTTGGTACCAGTCATTGCTTGATGAGGTTATAG
AGTTAGAAACAAACTTTAAAACGTGCTTGGTATACAGATCAAAAGTTGCG
CTCTCTCCAGCACACACAACAAGATAAAGAAGTTTGATTTTTTTAATGAA
ATAATTTTTTTGAGAATTCGTCATCGTTGTCAACTCATTTTGTCTTGGTC
ATCATCAAAAAAGAAAAGAAAAAAAATCTTTTTATTACAATTGAAAGTAC
ATTTTAAAAACAAGTTTATTGGGATTTTTTTGATTCATAATGGCAGTCGG
GATTATAATGAATTCGAACATGGCTAATCGCGGAGAGAGTTCATCTTCAT
CCTCAACGAACCCTTACGACCGCTCGCGTTTTACGCTCGATTTATCCTCG
GCAGGCCCGAGCACAAGTCGGCTCCGACATTGGGATATGTCGCCGACCGA
CGCCTCACCCGTTGAGGTAGTGAAATCTTTTGAGATTACCTTTTTACGGA
ATTGCTTATGCGGCACTTAAGTATTTATCTTTAACTAACACGTTAATTGA
TTTCGGATTTGCTGATCACGCTATTTTCGTTTTCACACCTCTATGTTATT
ATTTTCATTTCGAAAAGAATTATAAACTTTAATTTGATACAAAATTATAG
GTTTTCAACTTTTAATTAGCCGACTTAATTGCTATCACCTCTCTCTTCAT
ATCATGTTGCGATTTGTATTAAAAATTTATCAATGTCATTTTTGTCCTTG
TCAGCACTTTGATTTGTTATCAACATCACTATTTCTTTGAATTCGGAAAA
ACATCATATATTCTAGTTTCGTGTATACAGACACAAATTTGATCAAGACA
GGCATCAATAGGCATGCTTGACGCGGACAAGGAATGAACATTAAACAAAT
AATATATTTTTCTTTCTCTTTACAGGCACATCAAAACAATCCATCAATGC
TCGCATCACCATCAATGAATATGCCGATCCTATGCCGACCATACAACCCT
TACTCACCAGTCTCGGCTATCCAATCAATGGCGTCGCCTTCACCCATGAA
CACTTACGCACATTCACCCGGCAACTCTTCCACCTACTCCGCATCTCCTC
TCAATTCACCACAACAACATTTCAGTCAAGAAGATCTTATGATGCGTTAC
CGTATGCAGCAACACCCGATGATGGCGGCTCCCGGATACGGACCCCGTCC
AGTTGCTCAACCGGCCAGCGAATATGCATACTACTATAACGAATATGGCA
TGAAACGCCGAAAGCGTGATGAAGAGGTAAGAACAATTTCTCGATTTTTT
TGTTATTCATATGATTTCAAATACATATGGTTTTGATTGTCACGACTTTT
GACAAACAGAAAATTTTGTTGTTGTTTTTCGAAACAGTTTATGTGATGAT
TCATTCCTTCAAAAAGCTGAACACAGCAAAAAAAAATTCTCTACTCAAAA
GATTGAATCTCATATTTGATAAGGGAAAATAGGAAAATCTAAATTTTAAT
ATTAAGTATTTTCTTTCATTTTGTTCAGCTTTCACACGAAGAACTCGAGA
AACGACGTGTCCGACGTGAACGCAACAAGCAAGCAGCTTTACGTTGCCGC
ACACGAAGACGTGAACGAATCGACGCTCTAGAGCAGGTAAATTACGTCAT
TTTCTTACTACCGTTTCCCTATTATCAGACGTCGGAAACGAAACTTTGAA
ATCTTTTCTAATCCGGTGAAATTTGGCTTTTTATATCAGAAGGGAATATG
GCATAAGAAATACACTGCTTACTTATTTGAGATTTGTGGTTAATTGACCT
CAAGTACTGCGTGAAACCACATAAGATATAAAGGGACGCCCTAATTGTTA
TTTTAAAAGTTGATTTCAAACTTTTTTTCGGGCATTGAATATGACTGAAG
ATTCAAAAAATCACTTTGGCTAAAATAACCGTTGAAAATTTCCCGTTTTG
AAAAGTTTATTTGACCTTCTTACGTAAAGCTTATCAAAGCAAACATTGGA
AACATCTTTGGCCAACAAAAACTGTACAAATCAGCAAAAAAAACTTTCTT
ACGCCATATTCCTTTCAAGTATATAGAACTCATAATTTTTGTCTACAATG
TCTGTTTGAAAATTGTTTCAAAAACATGTTCAATTGTGCAACTTAATGAA
TTTTGAGTAAGCAATTGATATTGGTGAATTATCCATTATCCAGCATTGGA
CAAATTTCTTAATTTTCTTCAATTTTTCTTTTCACCAGGAAACAACACAA
ATTGAAGAAGACAACACACGTGTGGAGAAAGAAATTCGCGATCTCAAGAA
ACAATTAGATGAATTACAAAGTTTACTGAAGGAGCATGATTGTCCAAAAC
AGTTACCCTTCTCTGGTAGCAATGCTTGAAGAATGGTCGAGAAGGAATTG
GATTTTGAGAAGTGTGGATCCCATACGCGGATTTAGAATAGAGATTGATC
ATCATGATCAAAAGTCCCCAACATTAGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006534-exon-sc0000067-1575043694:560259..560704 | TCONS_00006534-exon-sc0000067-1575043694:560259..560704 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1575043694:557829..558179 | TCONS_00006534-exon-sc0000067-1575043694:557829..558179 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1575043694:557469..557576 | TCONS_00006534-exon-sc0000067-1575043694:557469..557576 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1575043694:556623..556866 | TCONS_00006534-exon-sc0000067-1575043694:556623..556866 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1510915933:560259..560704 | TCONS_00006534-exon-sc0000067-1510915933:560259..560704 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1510915933:557829..558179 | TCONS_00006534-exon-sc0000067-1510915933:557829..558179 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1510915933:557469..557576 | TCONS_00006534-exon-sc0000067-1510915933:557469..557576 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1510915933:556623..556866 | TCONS_00006534-exon-sc0000067-1510915933:556623..556866 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1491911889:560259..560704 | TCONS_00006534-exon-sc0000067-1491911889:560259..560704 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1491911889:557829..558179 | TCONS_00006534-exon-sc0000067-1491911889:557829..558179 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1491911889:557469..557576 | TCONS_00006534-exon-sc0000067-1491911889:557469..557576 | Clytia hemisphaerica | exon |
| TCONS_00006534-exon-sc0000067-1491911889:556623..556866 | TCONS_00006534-exon-sc0000067-1491911889:556623..556866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:556623..560704 - |
Blast
The following BLAST results are available for this feature:
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