TCONS_00006531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006531
Unique NameTCONS_00006531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006531 ID=TCONS_00006531|Name=TCONS_00006531|organism=Clytia hemisphaerica|type=transcript|length=1793bp
TTTTTTGATTCATAATGGCAGTCGGGATTATAATGAATTCGAACATGGCT
AATCGCGGAGAGAGTTCATCTTCATCCTCAACGAACCCTTACGACCGCTC
GCGTTTTACGCTCGATTTATCCTCGGCAGGCCCGAGCACAAGTCGGCTCC
GACATTGGGATATGTCGCCGACCGACGCCTCACCCGTTGAGGCACATCAA
AACAATCCATCAATGCTCGCATCACCATCAATGAATATGCCGATCCTATG
CCGACCATACAACCCTTACTCACCAGTCTCGGCTATCCAATCAATGGCGT
CGCCTTCACCCATGAACACTTACGCACATTCACCCGGCAACTCTTCCACC
TACTCCGCATCTCCTCTCAATTCACCACAACAACATTTCAGTCAAGAAGA
TCTTATGATGCGTTACCGTATGCAGCAACACCCGATGATGGCGGCTCCCG
GATACGGACCCCGTCCAGTTGCTCAACCGGCCAGCGAATATGCATACTAC
TATAACGAATATGGCATGAAACGCCGAAAGCGTGATGAAGAGCTTTCACA
CGAAGAACTCGAGAAACGACGTGTCCGACGTGAACGCAACAAGCAAGCAG
CTTTACGTTGCCGCACACGAAGACGTGAACGAATCGACGCTCTAGAGCAG
GAAACAACACAAATTGAAGAAGACAACACACGTGTGGAGAAAGAAATTCG
TGATCTCAAGAAACAATTAGATGAATTACAAAGTTTACTGAAGGAGCATG
ATTGTCCAAAACAGTTACCCTTCTCTGGTAGCAATGCTTGAAGAATGGTC
GAGAAGGAATTGGATTTTGAGAAGTGTGGATCCCATACGCGGATTTAGAA
TAGAGATCGATCATCACTCCTCAACATTAGAGCAGATGACAATGCGATTT
CGTGGTCTGTGATTGGATGTTGATTAGTGCCAGACAAGCAAACCGCCTTT
TAACGCACCTACACTTTACAAGTTCGAGCTTAGCATCTTATCCATGGAGG
TGAAACTCGACTAAGGCTACGCTTACACTTTGGATTTTAAGCTAGCTGTT
TTTAAAACTAGATACACACGAGAGATATAATATATGAATGAagagacaat
tttttttatatttttacatttttttgtgaaaagcaAAAGTCCCTTTTGTC
TTTTGTATGCGTCATAAAACCCTTAATCTGCGATGACGATAGTTTAAGAT
TAAGTTTGTtgtgttatatttttttctttctcaaattttcattgataatt
ttctgaagtttgaaagaaaaaatacataaacGTGCTATCAAGGGGACCAG
TGTCTTTACATattatttgtttgaaaaattcagagtttttttggtgattt
tcgTCCTGGCGACTTTCATTGCCGCTGGGATTACTGCCATAAAGTGAAAA
ACTCAATATTTTAGGctgtatattttttaaatattgtttATGTAAGAATG
TcaagctttgtttttatttttttaacaagataAACAAAAAGTTGTGTGCT
atattaatatttttgtttttttggaaaaagtcaaaatttttagTGAATTT
ATAATAGAATATTGATAAATGAAGATTGTATACAGCACAAAAACTACtaa
agaccaaaatatttttatttattgttatattaaaacaaatttcttgtaaa
aaattcattttgtatagatagatagatatttttcaatataaaaCTATAAA
TTTGTCGTTTTATTTTGTCTGACTGGTTCCTAAATGTTCCAATTTTCCAC
AGCAATTCTTGCCCTTGACTTCATCAAAAGTAattagattttc
Run BLAST on NCBI

transcript from alignment at sc0000067:555397..558829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006531 ID=TCONS_00006531|Name=TCONS_00006531|organism=Clytia hemisphaerica|type=transcript|length=3433bp|location=Sequence derived from alignment at sc0000067:555397..558829- (Clytia hemisphaerica)
TTTTTTGATTCATAATGGCAGTCGGGATTATAATGAATTCGAACATGGCT
AATCGCGGAGAGAGTTCATCTTCATCCTCAACGAACCCTTACGACCGCTC
GCGTTTTACGCTCGATTTATCCTCGGCAGGCCCGAGCACAAGTCGGCTCC
GACATTGGGATATGTCGCCGACCGACGCCTCACCCGTTGAGGTAGTGAAA
TCTTTTGAGATTACCTTTTTACGGAATTGCTTATGCGGCACTTAAGTATT
TATCTTTAACTAACACGTTAATTGATTTCGGATTTGCTGATCACGCTATT
TTCGTTTTCACACCTCTATGTTATTATTTTCATTTCGAAAAGAATTATAA
ACTTTAATTTGATACAAAATTATAGGTTTTCAACTTTTAATTAGCCGACT
TAATTGCTATCACCTCTCTCTTCATATCATGTTGCGATTTGTATTAAAAA
TTTATCAATGTCATTTTTGTCCTTGTCAGCACTTTGATTTGTTATCAACA
TCACTATTTCTTTGAATTCGGAAAAACATCATATATTCTAGTTTCGTGTA
TACAGACACAAATTTGATCAAGACAGGCATCAATAGGCATGCTTGACGCG
GACAAGGAATGAACATTAAACAAATAATATATTTTTCTTTCTCTTTACAG
GCACATCAAAACAATCCATCAATGCTCGCATCACCATCAATGAATATGCC
GATCCTATGCCGACCATACAACCCTTACTCACCAGTCTCGGCTATCCAAT
CAATGGCGTCGCCTTCACCCATGAACACTTACGCACATTCACCCGGCAAC
TCTTCCACCTACTCCGCATCTCCTCTCAATTCACCACAACAACATTTCAG
TCAAGAAGATCTTATGATGCGTTACCGTATGCAGCAACACCCGATGATGG
CGGCTCCCGGATACGGACCCCGTCCAGTTGCTCAACCGGCCAGCGAATAT
GCATACTACTATAACGAATATGGCATGAAACGCCGAAAGCGTGATGAAGA
GGTAAGAACAATTTCTCGATTTTTTTGTTATTCATATGATTTCAAATACA
TATGGTTTTGATTGTCACGACTTTTGACAAACAGAAAATTTTGTTGTTGT
TTTTCGAAACAGTTTATGTGATGATTCATTCCTTCAAAAAGCTGAACACA
GCAAAAAAAAATTCTCTACTCAAAAGATTGAATCTCATATTTGATAAGGG
AAAATAGGAAAATCTAAATTTTAATATTAAGTATTTTCTTTCATTTTGTT
CAGCTTTCACACGAAGAACTCGAGAAACGACGTGTCCGACGTGAACGCAA
CAAGCAAGCAGCTTTACGTTGCCGCACACGAAGACGTGAACGAATCGACG
CTCTAGAGCAGGTAAATTACGTCATTTTCTTACTACCGTTTCCCTATTAT
CAGACGTCGGAAACGAAACTTTGAAATCTTTTCTAATCCGGTGAAATTTG
GCTTTTTATATCAGAAGGGAATATGGCATAAGAAATACACTGCTTACTTA
TTTGAGATTTGTGGTTAATTGACCTCAAGTACTGCGTGAAACCACATAAG
ATATAAAGGGACGCCCTAATTGTTATTTTAAAAGTTGATTTCAAACTTTT
TTTCGGGCATTGAATATGACTGAAGATTCAAAAAATCACTTTGGCTAAAA
TAACCGTTGAAAATTTCCCGTTTTGAAAAGTTTATTTGACCTTCTTACGT
AAAGCTTATCAAAGCAAACATTGGAAACATCTTTGGCCAACAAAAACTGT
ACAAATCAGCAAAAAAAACTTTCTTACGCCATATTCCTTTCAAGTATATA
GAACTCATAATTTTTGTCTACAATGTCTGTTTGAAAATTGTTTCAAAAAC
ATGTTCAATTGTGCAACTTAATGAATTTTGAGTAAGCAATTGATATTGGT
GAATTATCCATTATCCAGCATTGGACAAATTTCTTAATTTTCTTCAATTT
TTCTTTTCACCAGGAAACAACACAAATTGAAGAAGACAACACACGTGTGG
AGAAAGAAATTCGCGATCTCAAGAAACAATTAGATGAATTACAAAGTTTA
CTGAAGGAGCATGATTGTCCAAAACAGTTACCCTTCTCTGGTAGCAATGC
TTGAAGAATGGTCGAGAAGGAATTGGATTTTGAGAAGTGTGGATCCCATA
CGCGGATTTAGAATAGAGATTGATCATCATGATCAAAAGTCCCCAACATT
AGAGCAGATGTNGCAATTGATATTGGTGAATTATCCATTATCCAGCATTG
GACAACTTTCTTAATTTTCTTCAATTTTTCTTTTCACCAGGAAACAACAC
AAATTGAAGAAGACAACACACGTGTGGAGAAAGAAATTCGTGATCTCAAG
AAACAATTAGATGAATTACAAAGTTTACTGAAGGAGCATGATTGTCCAAA
ACAGTTACCCTTCTCTGGTAGCAATGCTTGAAGAATGGTCGAGAAGGAAT
TGGATTTTGAGAAGTGTGGATCCCATACGCGGATTTAGAATAGAGATCGA
TCATCACTCCTCAACATTAGAGCAGATGACAATGCGATTTCGTGGTCTGT
GATTGGATGTTGATTAGTGCCAGACAAGCAAACCGCCTTTTAACGCACCT
ACACTTTACAAGTTCGAGCTTAGCATCTTATCCATGGAGGTGAAACTCGA
CTAAGGCTACGCTTACACTTTGGATTTTAAGCTAGCTGTTTTTAAAACTA
GATACACACGAGAGATATAATATATGAATGAAGAGACAATTTTTTTTATA
TTTTTACATTTTTTTGTGAAAAGCAAAAGTCCCTTTTGTCTTTTGTATGC
GTCATAAAACCCTTAATCTGCGATGACGATAGTTTAAGATTAAGTTTGTT
GTGTTATATTTTTTTCTTTCTCAAATTTTCATTGATAATTTTCTGAAGTT
TGAAAGAAAAAATACATAAACGTGCTATCAAGGGGACCAGTGTCTTTACA
TATTATTTGTTTGAAAAATTCAGAGTTTTTTTGGTGATTTTCGTCCTGGC
GACTTTCATTGCCGCTGGGATTACTGCCATAAAGTGAAAAACTCAATATT
TTAGGCTGTATATTTTTTAAATATTGTTTATGTAAGAATGTCAAGCTTTG
TTTTTATTTTTTTAACAAGATAAACAAAAAGTTGTGTGCTATATTAATAT
TTTTGTTTTTTTGGAAAAAGTCAAAATTTTTAGTGAATTTATAATAGAAT
ATTGATAAATGAAGATTGTATACAGCACAAAAACTACTAAAGACCAAAAT
ATTTTTATTTATTGTTATATTAAAACAAATTTCTTGTAAAAAATTCATTT
TGTATAGATAGATAGATATTTTTCAATATAAAACTATAAATTTGTCGTTT
TATTTTGTCTGACTGGTTCCTAAATGTTCCAATTTTCCACAGCAATTCTT
GCCCTTGACTTCATCAAAAGTAATTAGATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003694XLOC_003694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006531-exon-sc0000067-1575043694:558639..558829TCONS_00006531-exon-sc0000067-1575043694:558639..558829Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1575043694:557829..558179TCONS_00006531-exon-sc0000067-1575043694:557829..558179Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1575043694:557469..557576TCONS_00006531-exon-sc0000067-1575043694:557469..557576Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1575043694:555397..556539TCONS_00006531-exon-sc0000067-1575043694:555397..556539Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1510915933:558639..558829TCONS_00006531-exon-sc0000067-1510915933:558639..558829Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1510915933:557829..558179TCONS_00006531-exon-sc0000067-1510915933:557829..558179Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1510915933:557469..557576TCONS_00006531-exon-sc0000067-1510915933:557469..557576Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1510915933:555397..556539TCONS_00006531-exon-sc0000067-1510915933:555397..556539Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1491911889:558639..558829TCONS_00006531-exon-sc0000067-1491911889:558639..558829Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1491911889:557829..558179TCONS_00006531-exon-sc0000067-1491911889:557829..558179Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1491911889:557469..557576TCONS_00006531-exon-sc0000067-1491911889:557469..557576Clytia hemisphaericaexon
TCONS_00006531-exon-sc0000067-1491911889:555397..556539TCONS_00006531-exon-sc0000067-1491911889:555397..556539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:555397..558829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	100.871	68.0044	13.6558	15.6322	5.81151	219.113	23.5821	12.003	160.32	197.679	198.163	109.062	31.6456	90.3802	110.169	86.9155	5.70114	12.3988	1.62129	0.99276	4.03057	6.0988	449.615	460.907	262.165	228.176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top