TCONS_00006528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006528
Unique NameTCONS_00006528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006528 ID=TCONS_00006528|Name=TCONS_00006528|organism=Clytia hemisphaerica|type=transcript|length=1249bp
ACaggattttgaagatttttggtttttattaaatgttttttgtttatttt
tcgtttGTTTTAACTTTTACCATTCGCCATCGTCATATGGTAAAGGAGCG
TCTTGAGCTTCCATCATTAGTTCTTTGTAGAAGTTGATACGCTCTAGACT
CACTTCGGTTGGTCGTTCTTGCATTGGTGGAATGGCGTTAGGTGGAAGTA
AACCGCATTCTTTCAGCTGATTGAACTTCTTTGAGGAGACGGTTAATTCC
ACGCCATTCTTATCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCT
TTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGG
CGTTGGGTGGAATCAAACCGCATTCTTTCAGCTGATTGAACTTCTTTGAA
GTGACGGTTAATTCCACGCCATTCTTGTCTGTGAAGGTGATCAACTGTTG
GCTTTTAGCTTGCCTTTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTT
GCGTTGGTGCAATGGCGTTGGGTGGAATCAAACCGCTGGCTTTCAGCTGA
TTGAACTTCTTTGAAGTGACGGTTAATCCCATGCCATTCTTGTCCGTGAA
GGTGATCAACTGTTGGCTCGTAGCTTGCCTTTTCAAAGGTGAAGTCACTT
CGGTTGGTGGTTCTTGCGTTGGTGCAATGGCGTTGGGTGGAATCAAACCG
CTGGCTTTCAGCTGATTGAACTTCTTTGAAGTGACGGTTAATTCCATGCC
ATTCTTGTCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCTTTTCA
AAGGTGAAGTCATTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGGCGTTG
GGTGGAATCAAACCGCATTCTTTCAGCTGATTGAATTTCTTGGAAGAGAC
GGTTAATTCCACGCCATTCTTATCCGTGAAGGTGATCAATGAAGTTGGTT
GTCCACAGCTTGCTTTCGTGTTATGAAGTCGAGTTATTCTCCCCTTGGTA
TAATTGATTTCTTTACAGAAGTCTTTTTTGGAGGAAGAGTATTTTTGTTT
CTTGCGtgattttacaattttggttGTTCGTTCCAGAACAACTGTTTTAA
GCCACTTTTCCTCTTGTTGTCTGCCACATCGGTCTGTTTTCAATGTTGAC
AGCATTTTCAAACTTATTATTTCACTTTATAAATACGATATAAAATTTTC
ACGATAATATTATCAGGATCAGTGTCAATTCGGCGTTACGCTGAAATGG
Run BLAST on NCBI

transcript from alignment at sc0000067:552542..554079-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006528 ID=TCONS_00006528|Name=TCONS_00006528|organism=Clytia hemisphaerica|type=transcript|length=1538bp|location=Sequence derived from alignment at sc0000067:552542..554079- (Clytia hemisphaerica)
ACAGGATTTTGAAGATTTTTGGTTTTTATTAAATGTTTTTTGTTTATTTT
TCGTTTGTTTTAACTTTTACCATTCGCCATCGTCATATGGTAAAGGAGCG
TCTTGAGCTTCCATCATTAGTTCTTTGTAGAAGTTGATACGCTCTAGACT
CACTTCGGTTGGTCGTTCTTGCATTGGTGGAATGGCGTTAGGTGGAAGTA
AACCGCATTCTTTCAGCTGATTGAACTTCTTTGAGGAGACGGTTAATTCC
ACGCCATTCTTATCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCT
TTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGG
CGTTGGGTGGAATCAAACCGCATTCTTTCAGCTGATTGAACTTCTTTGAA
GTGACGGTTAATTCCACGCCATTCTTGTCTGTGAAGGTGATCAACTGTTG
GCTTTTAGCTTGCCTTTTCAAAGGTGAAGCNATTAAATGTTTTTTGTTTA
TTTTTCGTTTGTTTTAACTTTTACCATTCGCCATCGTCATATGGTAAAGG
AGCGTCTTGAGCTTCCATCATTAGTTCTTTGTAGAAGTTGATACGCTCTA
GACTCACTTCGGTTGGTCGTTCTTGCATTGGTGGAATGGCGTTAGGTGGA
AGTAAACCGCATTCTTTCAGCTGATTGAACTTCTTTGAGGAGACGGTTAA
TTCCACGCCATTCTTATCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTT
GCCTTTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTTGCGTTGGTGCA
ATGGCGTTGGGTGGAATCAAACCGCTGGCTTTCAGCTGATTGAACTTCTT
TGAAGTGACGGTTAATCCCATGCCATTCTTGTCCGTGAAGGTGATCAACT
GTTGGCTCGTAGCTTGCCTTTTCAAAGGTGAAGTCACTTCGGTTGGTGGT
TCTTGCGTTGGTGCAATGGCGTTGGGTGGAATCAAACCGCTGGCTTTCAG
CTGATTGAACTTCTTTGAAGTGACGGTTAATTCCATGCCATTCTTGTCCG
TGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCTTTTCAAAGGTGAAGTC
ATTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGGCGTTGGGTGGAATCAA
ACCGCATTCTTTCAGCTGATTGAATTTCTTGGAAGAGACGGTTAATTCCA
CGCCATTCTTATCCGTGAAGGTGATCAATGAAGTTGGTTGTCCACAGCTT
GCTTTCGTGTTATGAAGTCGAGTTATTCTCCCCTTGGTATAATTGATTTC
TTTACAGAAGTCTTTTTTGGAGGAAGAGTATTTTTGTTTCTTGCGTGATT
TTACAATTTTGGTTGTTCGTTCCAGAACAACTGTTTTAAGCCACTTTTCC
TCTTGTTGTCTGCCACATCGGTCTGTTTTCAATGTTGACAGCATTTTCAA
ACTTATTATTTCACTTTATAAATACGATATAAAATTTTCACGATAATATT
ATCAGGATCAGTGTCAATTCGGCGTTACGCTGAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003693XLOC_003693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006528-exon-sc0000067-1575043694:553607..554079TCONS_00006528-exon-sc0000067-1575043694:553607..554079Clytia hemisphaericaexon
TCONS_00006528-exon-sc0000067-1575043694:552542..553317TCONS_00006528-exon-sc0000067-1575043694:552542..553317Clytia hemisphaericaexon
TCONS_00006528-exon-sc0000067-1510915933:553607..554079TCONS_00006528-exon-sc0000067-1510915933:553607..554079Clytia hemisphaericaexon
TCONS_00006528-exon-sc0000067-1510915933:552542..553317TCONS_00006528-exon-sc0000067-1510915933:552542..553317Clytia hemisphaericaexon
TCONS_00006528-exon-sc0000067-1491911889:553607..554079TCONS_00006528-exon-sc0000067-1491911889:553607..554079Clytia hemisphaericaexon
TCONS_00006528-exon-sc0000067-1491911889:552542..553317TCONS_00006528-exon-sc0000067-1491911889:552542..553317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:552542..554079 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0410593	0	0	0.120964	0	0	0	0.0387412	0	0	0.0656201	0	0	0	0	0	0	0	0.130751	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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