TCONS_00006527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006527
Unique NameTCONS_00006527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006527 ID=TCONS_00006527|Name=TCONS_00006527|organism=Clytia hemisphaerica|type=transcript|length=1084bp
ACaggattttgaagatttttggtttttattaaatgttttttgtttatttt
tcgtttGTTTTAACTTTTACCATTCGCCATCGTCATATGGTAAAGGAGCG
TCTTGAGCTTCCATCATTAGTTCTTTGTAGAAGTTGATACGCTCTAGACT
CACTTCGGTTGGTCGTTCTTGCATTGGTGGAATGGCGTTAGGTGGAAGTA
AACCGCATTCTTTCAGCTGATTGAACTTCTTTGAGGAGACGGTTAATTCC
ACGCCATTCTTATCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCT
TTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGG
CGTTGGGTGGAATCAAACCGCATTCTTTCAGCTGATTGAACTTCTTTGAA
GTGACGGTTAATTCCACGCCATTCTTGTCTGTGAAGGTGATCAACTGTTG
GCTTTTAGCTTGCCTTTTCAAAGGTGAAGTCACTTCGGTTGGTGGTTCTT
GCGTTGGTGCAATGGCGTTGGGTGGAATCAAACCGCTGGCTTTCAGCTGA
TTGAACTTCTTTGAAGTGACGGTTAATTCCATGCCATTCTTGTCCGTGAA
GGTGATCAACTGTTGGCTTGTAGCTTGCCTTTTCAAAGGTGAAGTCATTT
CGGTTGGTCGTTCTTGCGTTGGTGCAATGGCGTTGGGTGGAATCAAACCG
CATTCTTTCAGCTGATTGAATTTCTTGGAAGAGACGGTTAATTCCACGCC
ATTCTTATCCGTGAAGGTGATCAATGAAGTTGGTTGTCCACAGCTTGCTT
TCGTGTTATGAAGTCGAGTTATTCTCCCCTTGGTATAATTGATTTCTTTA
CAGAAGTCTTTTTTGGAGGAAGAGTATTTTTGTTTCTTGCGtgattttac
aattttggttGTTCGTTCCAGAACAACTGTTTTAAGCCACTTTTCCTCTT
GTTGTCTGCCACATCGGTCTGTTTTCAATGTTGACAGCATTTTCAAACTT
ATTATTTCACTTTATAAATACGATATAAAATTTTCACGATAATATTATCA
GGATCAGTGTCAATTCGGCGTTACGCTGAAATGG
Run BLAST on NCBI

transcript from alignment at sc0000067:552542..554079-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006527 ID=TCONS_00006527|Name=TCONS_00006527|organism=Clytia hemisphaerica|type=transcript|length=1538bp|location=Sequence derived from alignment at sc0000067:552542..554079- (Clytia hemisphaerica)
ACAGGATTTTGAAGATTTTTGGTTTTTATTAAATGTTTTTTGTTTATTTT
TCGTTTGTTTTAACTTTTACCATTCGCCATCGTCATATGGTAAAGGAGCG
TCTTGAGCTTCCATCATTAGTTCTTTGTAGAAGTTGATACGCTCTAGACT
CACTTCGGTTGGTCGTTCTTGCATTGGTGGAATGGCGTTAGGTGGAAGTA
AACCGCATTCTTTCAGCTGATTGAACTTCTTTGAGGAGACGGTTAATTCC
ACGCCATTCTTATCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCT
TTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGG
CGTTGGGTGGAATCAAACCGCATTCTTTCAGCTGATTGAACTTCTTTGAA
GTGACGGTTAATTCCACGCCATTCTTGTCTGTGAAGGTGATCAACTGTTG
GCTTTTAGCTTGCCTTTTCAAAGGTGAAGCNATTAAATGTTTTTTGTTTA
TTTTTCGTTTGTTTTAACTTTTACCATTCGCCATCGTCATATGGTAAAGG
AGCGTCTTGAGCTTCCATCATTAGTTCTTTGTAGAAGTTGATACGCTCTA
GACTCACTTCGGTTGGTCGTTCTTGCATTGGTGGAATGGCGTTAGGTGGA
AGTAAACCGCATTCTTTCAGCTGATTGAACTTCTTTGAGGAGACGGTTAA
TTCCACGCCATTCTTATCCGTGAAGGTGATCAACTGTTGGCTTGTAGCTT
GCCTTTTCAAAGGTGAAGCCACTTCGGTTGGTCGTTCTTGCGTTGGTGCA
ATGGCGTTGGGTGGAATCAAACCGCTGGCTTTCAGCTGATTGAACTTCTT
TGAAGTGACGGTTAATCCCATGCCATTCTTGTCCGTGAAGGTGATCAACT
GTTGGCTCGTAGCTTGCCTTTTCAAAGGTGAAGTCACTTCGGTTGGTGGT
TCTTGCGTTGGTGCAATGGCGTTGGGTGGAATCAAACCGCTGGCTTTCAG
CTGATTGAACTTCTTTGAAGTGACGGTTAATTCCATGCCATTCTTGTCCG
TGAAGGTGATCAACTGTTGGCTTGTAGCTTGCCTTTTCAAAGGTGAAGTC
ATTTCGGTTGGTCGTTCTTGCGTTGGTGCAATGGCGTTGGGTGGAATCAA
ACCGCATTCTTTCAGCTGATTGAATTTCTTGGAAGAGACGGTTAATTCCA
CGCCATTCTTATCCGTGAAGGTGATCAATGAAGTTGGTTGTCCACAGCTT
GCTTTCGTGTTATGAAGTCGAGTTATTCTCCCCTTGGTATAATTGATTTC
TTTACAGAAGTCTTTTTTGGAGGAAGAGTATTTTTGTTTCTTGCGTGATT
TTACAATTTTGGTTGTTCGTTCCAGAACAACTGTTTTAAGCCACTTTTCC
TCTTGTTGTCTGCCACATCGGTCTGTTTTCAATGTTGACAGCATTTTCAA
ACTTATTATTTCACTTTATAAATACGATATAAAATTTTCACGATAATATT
ATCAGGATCAGTGTCAATTCGGCGTTACGCTGAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003693XLOC_003693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006527-exon-sc0000067-1575043694:553607..554079TCONS_00006527-exon-sc0000067-1575043694:553607..554079Clytia hemisphaericaexon
TCONS_00006527-exon-sc0000067-1575043694:552542..553152TCONS_00006527-exon-sc0000067-1575043694:552542..553152Clytia hemisphaericaexon
TCONS_00006527-exon-sc0000067-1510915933:553607..554079TCONS_00006527-exon-sc0000067-1510915933:553607..554079Clytia hemisphaericaexon
TCONS_00006527-exon-sc0000067-1510915933:552542..553152TCONS_00006527-exon-sc0000067-1510915933:552542..553152Clytia hemisphaericaexon
TCONS_00006527-exon-sc0000067-1491911889:553607..554079TCONS_00006527-exon-sc0000067-1491911889:553607..554079Clytia hemisphaericaexon
TCONS_00006527-exon-sc0000067-1491911889:552542..553152TCONS_00006527-exon-sc0000067-1491911889:552542..553152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:552542..554079 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283822	0.237232	0.734532	0.538969	0.164036	0.0432077	0.0521283	0	0	0.0846435	0	0.135017	0.134829	0.0280043	0	0.0533164	0.0608754	0	0	0	0	0.114729	0.0464892	0.0422655	0.0435324	0	0.111193	0.178003	0.225014	0.0458508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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