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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006519 ID=TCONS_00006519|Name=TCONS_00006519|organism=Clytia hemisphaerica|type=transcript|length=1006bp
GAATAGTCAAGTGTGGGATGGGTAATCTTTCTCTCGAATTTCCCATAAGg
taacATGAACTGTGTGTTGGTCTTTTTGGTATTATTCCTGGCAAATAATG
TTTACTCCGCCTCCTTGACACGTGAGGAAGATGCTCTGGTAACTAAGCTA
CTGGACACGATCGAAAAACGGGATGCAGTACCTCGACTTGGTAAACGAGA
AGTACCTAGGCTTGGAAGAGAAATTGAGGAGGTACCTAGGCTTGGAAGAG
AGATCGAATTGGTACCTAGACTAGGACGAGAAGCTGAAGAAGTACCTAGG
CTTGGTCGAGAAGTTGAATTGGTACCCAGGCTTGGTCGAGAAGTCGAATT
GGTACCCAGGCTTGGTCGAGAAGTCGAAGTTCCGAGACTTGGGAGAGAGG
TTCCCAGACTAGGACGTGAGATGGAAGAAGTGCCAAGGCTTGGTCGTGAA
ATTGACGAAGTTCCAAGATTGGGTAGAGAAGTACCTAGGCTGGGAAGAGA
ACTCGAAGTTCCCAGGTTAGGCCGAGAAGTACCACGGCTTGGAAAGCGTG
AAATTCCAAGATTAGGAAAACGAGAAGTACCTAGACTGGGACGTGAAGCA
TCAACGTATGACTTGAAACAATTGTACAATCAATTAAAACGTGAAGTCTC
AAATGACATGATAGAAGCTGAAATTAAAGAAGAAAAGCGCGTTCTGAAAG
CGTTCAATCTTGGCACGCGTGGTCTAATATTGAGAAGAATCGGAGATAAA
TTAAATAAAGATGGATTTTCTGACCAAAAACGGGGTATGAATGAAAAGGA
AAGTAGCAGACCATTCTTGCATGTGAAACGCACAAACTTACTCTCGTTGA
TCGAGAAGCTTACTTCAGAAGAATAATATGTTAAAGTAGTATTTAATAAT
TCTAATTTTAATGAATCATTAtcattatataaaaatttatatCGTTAAAA
TAAATAGTTGGTAGATTATAGAGTGGCTTCTAAAATATCTTAAATAACAC
CTATAC Run BLAST on NCBI transcript from alignment at sc0000067:489861..492472- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006519 ID=TCONS_00006519|Name=TCONS_00006519|organism=Clytia hemisphaerica|type=transcript|length=2612bp|location=Sequence derived from alignment at sc0000067:489861..492472- (Clytia hemisphaerica)
GAATAGTCAAGTGTGGGATGGGTAATCTTTCTCTCGAATTTCCCATAAGG
TATTTTACTATGATCCTATATTATTAAGAATTAAATTTTTCATTTTGATA
ATCTACACAATGGCACGGAAAATTAGGACGGAGGTATAAATCCTGACGCG
TCTCTGATATAAGACACTTTATTCACATCAGTTTTGTACGCTTCAGACCT
GTTTTAACGGAATTTAGGCAGGGAAAATTTGAAATTTTACATACGTCAGA
AATAGGTAAGATTTTATCTGTTTTGATTTGATTTTAATAGATTTTTCTTC
TATATAGAAGGAGGTCCAAAAAAATTGATGTAGCCAAAACACCAAATATT
TTCAAATGTTGAAAGCTTATTTATTGAAAAATTATTCAAAAATTCTCATC
TTTACTCCGGATATTATACCGTCGATTGTCAGTGTATCATAGACATTTTT
GTACTGCATATCTTAGAATTTAAATTTGTTTTTTTTTGTACGAAATTTGC
CACATTTTGACCTTATTTTTTCTAATTTTCTACTTCGTGTTCATTATTTT
TCCAAAAAGAATACTTTTAAACATCTGTCAATTCCAGGTATATATTTACT
GAGAAAAAAACAAAAAACTTGTTTTAGGCAGAGCTTTAGATACTTCCAAT
AAATAAACTCTGAAAGGTAAATTTTGAGATATTTAAAAAAGGAGGAAGAA
AAAAAAGATCGATTTCGAATTTTTTGGAAGAACTAATATCTCTCACTGCA
TGTAGCGATTATCTTTTACAATATGAGTATTTTAGTACTTCACTTTTAGA
TAGATTAAGTCTTAATTAATGTCTGAAGGTTCCTGCTAATGATTAATAGA
GCTGGTTATTTTTTGGTTTAGGTATAATAGATTTTGAAGAGTGTTTAGTT
TAAGCTAGAAGCGCAGGATATAAGGGGTAGGGTCTAGAACTACATTATTC
GTGCAAAGTTCGTCGGGGAAAAAAAGACCAATTTTGTTTTTGCCGACGAT
TATTTTTAACTGATGATTAATTTTTTCCGGCCAACAAATTTCCCGAATGA
TTTCAGTTACTTTGGTAATTTTTGTAGGGTAATCCAAATCTGTTTGGAGA
TGAGTGCTAGCTGGTTCAAAATTGAAGATATTGACTGCGTCATTATAGTT
GATCTTGGAATTGTTTATTTAGCTCCATTTAAACCCAACCTCCCTTTTGT
TGAGGCCTCCACCCTTTTCATAACTTCTCCTCCCCTGCCCGTCCAAGTAA
ACATCCTAAACGTGAAAATAAGTGGACAAGAAAAATATTTGTTTGTGAAA
TTTATCAAAATCTGTTTTCTTATTCATGAAAACGCCTCCTAAAGGGCTGA
ATATTTGGATTTTAAGTTAATTTTTAGAGCTTATAAAAAGCTATAGTCAT
TCTTTTTTGTATTAGTGTAAGCTTTAGATTTTTCTCTCCTGCCCTTATGG
AAAGAAGTTGGTTGTTGAAAATTATTCATGTATTTTAAACTAGTCTTATA
ATGGCGGAGATATTCTGCATAGCGATGAACAATATTCTATATGGTGGTGG
TGATTTAATGATTCAGCCTTATCAGCCTCGTTTTTACGACTTTGGCAAAT
GTTATGTACACTGAATAAATTTCTATCAATCGGATTTCTAATCTTTTTTT
TTCAGGTAACATGAACTGTGTGTTGGTCTTTTTGGTATTATTCCTGGCAA
ATAATGTTTACTCCGCCTCCTTGACACGTGAGGAAGATGCTCTGGTAACT
AAGCTACTGGACACGATCGAAAAACGGGATGCAGTACCTCGACTTGGTAA
ACGAGAAGTACCTAGGCTTGGAAGAGAAATTGAGGAGGTACCTAGGCTTG
GAAGAGAGATCGAATTGGTACCTAGACTAGGACGAGAAGCTGAAGAAGTA
CCTAGGCTTGGTCGAGAAGTTGAATTGGTACCCAGGCTTGGTCGAGAAGT
CGAATTGGTACCCAGGCTTGGTCGAGAAGTCGAAGTTCCGAGACTTGGGA
GAGAGGTTCCCAGACTAGGACGTGAGATGGAAGAAGTGCCAAGGCTTGGT
CGTGAAATTGACGAAGTTCCAAGATTGGGTAGAGAAGTACCTAGGCTGGG
AAGAGAACTCGAAGTTCCCAGGTTAGGCCGAGAAGTACCACGGCTTGGAA
AGCGTGAAATTCCAAGATTAGGAAAACGAGAAGTACCTAGACTGGGACGT
GAAGCATCAACGTATGACTTGAAACAATTGTACAATCAATTAAAACGTGA
AGTCTCAAATGACATGATAGAAGCTGAAATTAAAGAAGAAAAGCGCGTTC
TGAAAGCGTTCAATCTTGGCACGCGTGGTCTAATATTGAGAAGAATCGGA
GATAAATTAAATAAAGATGGATTTTCTGACCAAAAACGGGGTATGAATGA
AAAGGAAAGTAGCAGACCATTCTTGCATGTGAAACGCACAAACTTACTCT
CGTTGATCGAGAAGCTTACTTCAGAAGAATAATATGTTAAAGTAGTATTT
AATAATTCTAATTTTAATGAATCATTATCATTATATAAAAATTTATATCG
TTAAAATAAATAGTTGGTAGATTATAGAGTGGCTTCTAAAATATCTTAAA
TAACACCTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006519-exon-sc0000067-1575043694:492424..492472 | TCONS_00006519-exon-sc0000067-1575043694:492424..492472 | Clytia hemisphaerica | exon |
| TCONS_00006519-exon-sc0000067-1575043694:489861..490817 | TCONS_00006519-exon-sc0000067-1575043694:489861..490817 | Clytia hemisphaerica | exon |
| TCONS_00006519-exon-sc0000067-1510915933:492424..492472 | TCONS_00006519-exon-sc0000067-1510915933:492424..492472 | Clytia hemisphaerica | exon |
| TCONS_00006519-exon-sc0000067-1510915933:489861..490817 | TCONS_00006519-exon-sc0000067-1510915933:489861..490817 | Clytia hemisphaerica | exon |
| TCONS_00006519-exon-sc0000067-1491911889:492424..492472 | TCONS_00006519-exon-sc0000067-1491911889:492424..492472 | Clytia hemisphaerica | exon |
| TCONS_00006519-exon-sc0000067-1491911889:489861..490817 | TCONS_00006519-exon-sc0000067-1491911889:489861..490817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:489861..492472 - |
Blast
The following BLAST results are available for this feature:
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