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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006496 ID=TCONS_00006496|Name=TCONS_00006496|organism=Clytia hemisphaerica|type=transcript|length=1960bpRun BLAST on NCBI protein sequence of TCONS_00006496-protein >TCONS_00006496-protein ID=TCONS_00006496-protein|Name=TCONS_00006496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MASGFNWRSEDFSEPFDPNNFVERISANIDGGGTKGGQEGFDPVKLKNHFRun BLAST on NCBI transcript from alignment at sc0000067:333173..359347- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006496 ID=TCONS_00006496|Name=TCONS_00006496|organism=Clytia hemisphaerica|type=transcript|length=26175bp|location=Sequence derived from alignment at sc0000067:333173..359347- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:333173..359347- >TCONS_00006496 ID=TCONS_00006496|Name=TCONS_00006496|organism=Clytia hemisphaerica|type=CDS|length=25536bp|location=Sequence derived from alignment at sc0000067:333173..359347- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006496 vs. Swiss-Prot (Human)
Match: EXOC5 (Exocyst complex component 5 OS=Homo sapiens GN=EXOC5 PE=1 SV=1) HSP 1 Score: 357.451 bits (916), Expect = 1.543e-112 Identity = 198/503 (39.36%), Postives = 298/503 (59.24%), Query Frame = 1
Query: 316 SEDFSEPFDPNNFVERISANIDGGGTKGGQEGFDPVKLKNHFLETIKSLQQLSEKTDAQIVKLEQVCKDQEQKHKENTLEVEKQYKTAMTQFHDLDDRINSVATKVVHLGDQLENISIPRQRVQETTQVMKYFEEFHPGKELSPIFNDKSKLHEAANLICQLLMVADELPKDQFERVYRKILEKYSTIESDLQREFVHAYKDGNLEVMAKCAKTLLPFKNYHLCYEELIKMAVEDKFNSPDVFEDVLPACQTMQEIVTKVFDNNAEHVLAKFVQYVFEKKLAGYIYKQLPE-KEVEEEAYLKKLAQLYGKCKDINKKLADFRLGSD-STFLDRICKPMFSKYLGKYIEDELQFLEEESASTLNRFYNSIGHIKKEIKQNFISDMPDSLRELQRKIPGRDKNALKENLLSQDVCVSLLQDNKLAIRRAEMLSSPSELPSNVYRIFKIFLKYLGEEHFEYAIDVTLQFLPPLEPKSPPDLLFLNVLSTSNTIFHLIEKHFTDYIL 1818
+E F EPF + ++ER+ GGG++GG E FDP +L F+ I+ LQ + E+ ++ KLEQ C+ + ++ + E++K + A F +LD+ I+ VATKV HLGDQLE ++ PRQR E ++MKYF EF G+ S +F + K+ EAA++I +L ++A ELP D+F V KI KY +E L +EF A + G + M + A LL FK Y C + IK E + D+FED CQ + + V +F +N E VLAK +Q VFE KL ++ +QL E ++ + E YLK L LY + +++ KL +F LG+D TFL ++ K +F YL YIE E +L+ SA L R+Y+S H K+ I I D+ + +R+ G + E LSQ+V V+LLQ+ K A R LS PS+LP N +RIF I +++L EH +YA++ L +P + ++ +L FL+V+ +NTIFHL +K F D+++
Sbjct: 5 AELFEEPFVADEYIERLVWRTPGGGSRGGPEAFDPKRLLEEFVNHIQELQIMDERIQRKVEKLEQQCQKEAKEFAKKVQELQKSNQVAFQHFQELDEHISYVATKVCHLGDQLEGVNTPRQRAVEAQKLMKYFNEFLDGELKSDVFTNSEKIKEAADIIQKLHLIAQELPFDRFSEVKSKIASKYHDLECQLIQEFTSAQRRGEISRMREVAAVLLHFKGYSHCVDVYIKQCQEGAYLRNDIFEDAGILCQRVNKQVGDIF-SNPETVLAKLIQNVFEIKLQSFVKEQLEECRKSDAEQYLKNLYDLYTRTTNLSSKLMEFNLGTDKQTFLSKLIKSIFISYLENYIEVETGYLKSRSAMILQRYYDSKNHQKRSIGTGGIQDLKERIRQRTNLPLGPSIDTHGETFLSQEVVVNLLQETKQAFERCHRLSDPSDLPRNAFRIFTILVEFLCIEHIDYALETGLAGIPSSDSRN-ANLYFLDVVQQANTIFHLFDKQFNDHLM 505 The following BLAST results are available for this feature:
BLAST of TCONS_00006496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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