TCONS_00006495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006495
Unique NameTCONS_00006495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006495 ID=TCONS_00006495|Name=TCONS_00006495|organism=Clytia hemisphaerica|type=transcript|length=984bp
agatagatagatatgccctccgatgcatcggaatgggtcctacccacgat
ggagtaggaatcacagcgcaagcagacattgcaaccctgcagatgcgagc
tgccgagccatggtgtataccatgccactcgaactacacgggagaacgga
tgtTCCCGCNTTCAGTGATTTACAGTAAATGCGCTTCACGAAAGAAAATA
CTGATTGACACTTTGGAAACCAAACTAAACCAAGGCATTGATAGAGTGTT
GAGTAGTATGGTGAACTACTTGAAGTTTTTGTTGAACTCCGAACAAAAGA
AGACAGATTTCCGTCCTGAAAACGAAACATTGGGAGCTATGGCGCAAACA
ACTGCTTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCCCCGAGTT
AAGGCTCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACGGAGTTTG
GGACGCGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATATATTTTC
TCCGACATCGGAGCGATGATAGCGTTATGCGACATCAACGAGTACCGCCA
CACGatgaaagaactcaaaatcCCATTGGTCGAACGTTTGTTCGGTGTTT
TGTTGGCCTTGTTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGAA
GTGGGTAACGATGAACAGCTGGCGGATATCGACAAAGCCGTTCTTCAACA
ATTCGTTCAGCTTCGAGCCGACTACAAACAACTCAAATTAGGGAAAGTGT
TTACGTAAATTATTATTGTCAAattgtcaaatatttttattttttaattt
agatTTATCCCATTGATGATGAAATTAATTAATGATTTTTACATCGAAAA
CAATATAATTATTTAATTGATCAAATGCTACAAATCAACCTGCTTTCCCG
AAGACATTGATAGGTCCCCTATTAGTCTTTGAATTGTACATAgacaatta
tttttttaacaaaatactACTGCTTTTATTAAGA
Run BLAST on NCBI

protein sequence of TCONS_00006495-protein

>TCONS_00006495-protein ID=TCONS_00006495-protein|Name=TCONS_00006495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
IDRYALRCIGMGPTHDGVGITAQADIATLQMRAAEPWCIPCHSNYTGERM
FPXSVIYSKCASRKKILIDTLETKLNQGIDRVLSSMVNYLKFLLNSEQKK
TDFRPENETLGAMAQTTACQKCCRYIKNVLPELRLGLDGKNLELVLTEFG
TRFHKLLLDHMYQYIFSDIGAMIALCDINEYRHTMKELKIPLVERLFGVL
LALFNLLVVQPDNLKEVGNDEQLADIDKAVLQQFVQLRADYKQLKLGKVF
T
Run BLAST on NCBI

transcript from alignment at sc0000067:329203..333077-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006495 ID=TCONS_00006495|Name=TCONS_00006495|organism=Clytia hemisphaerica|type=transcript|length=3875bp|location=Sequence derived from alignment at sc0000067:329203..333077- (Clytia hemisphaerica)
AGATAGATAGATATGCCCTCCGATGCATCGGAATGGGTCCTACCCACGAT GGAGTAGGAATCACAGCGCAAGCAGACATTGCAACCCTGCAGATGCGAGC TGCCGAGCCATGGTGTATACCATGCCACTCGAACTACACGGGAGAACGGA TGTTCCCGCNTTCAGTGATTTACAGTAAATGCGCTTCACGAAAGAAAATA CTGATTGACACTTTGGAAACCAAACTAAACCAAGGCATTGATAGGTGATG ATTCTGTCTTAATATTTTATTACTTCCTTGCTTTAAACCAGCATGTCAAA GTTTCCATAGAAAATACATGTTTGATAAACACTATTTATCAAAAGATAAC GATGATGATTGATTTTCCTTCAAAATACATGATTGATTTTCCTTTAAAAT ATAAGGCTTCTTTTCTTAAAAATGCAAAAAATTGTTAAATTTTCCTTTAA CATATACATATTGTTTATTTTGCTTAAAAAATGACATGGTTGATTTTCCT AAATTTTCCTTGGGCCCTACTTTCTCTCAAAGTTCTTTAAATTAAAGGGG CATTAAAGTAGTAAAATGTAAACATTGTGCGAACCACGTGTCATTAAAGA GAACAATTAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN GTTTGATTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGC TGCATACAGTTTGTTTACAAATTTTGCAAGTACTGTTATGTCCCTTTAAA TCATATATTGTTGATAGTTTTTTATTTATTTCGTTTTTTTGCAGAGTGTT GAGTAGTATGGTGAACTACTTGAAGTTTTTGTTGAACTCCGAACAAAAGA AGACAGATTTCCGTCCTGAAAACGAAACATTGGGAGCTATGGCGCAAACA ACTGTAAGGAGACCCTGTTATTTTTGTAGTTTCTCTCTGATAAAACGTTC TCCCAAATATTACATAGCGTCAGCCCCCCCCCTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACCCTAAATTTTTCCCA AAAGAGGAGGGGGCTGGAAGTACACCACTTTTTTGGGGGGACCTATGTAC TTGGGGGGAGCTAAAATCTCATCACTTAACGTGGGGTCTAAAATAATTCA GCTTCATAGTTGGCTTCAATTACTCAAATCGGAGCTCATGAATCTGAAAA ATTTTCGCCTACGGCGCAATATTTTTGTAGAAAGTGTGCAAAATTATTTA TCTTAAACTTAGAACTGAACGCAATTTACATTGGAATAACCTTTTTTACT GGATCAATTTTTTGAAAGTGTCTTGGGTCAAAAGTCCTGGGGGCTAACGA AAAATTCATAAATCTTTGGGGGGACTTAAAATTCAGGGGGGGGGNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGG GGGCTAAAATAATTCAGCTTAATAGTTGGCTTCAATTACTCAAATTGAAG CTCATGAATCTGAAAAATTTTCGCCTGCTGTGCAATATTTTTGTAGAAAG TGTGCAAAATTATTTATCTTAAACTTAGAACTGAACGCAATTTACATTGG AATAACCTTTTTTACTGGATCAATTTTTTGAAAGTGTCTAGGGTCAAAAG TCCTGGGGGCTAACGAAAAATTCATAAATCTTTGGGGAGACTTAAAATTC AGGGGGGACCTAGTTTTTGCCTGGGACCTAAACCCAGGCTGACGCTATGT ATTACCCGCTTTGAAAATCTACTCTAAGAAAACAAAATGGTTGGGTCAGA GTTTCGCACGGTTTTTTTAATTGTTAGATCATATTTGATGTTCCTTTCAA CAATTCATTTCATCAATTACTCTGAAGGCACACACAAAAATCCTTTCTTC GAGTAATTGGTCTAAATCTGCTTAACAGACACTCATCTTCTTGAACCTAC AGGCTTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCCCCGAGTTA AGGCTCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACGGAGTTTGG GACGCGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATATATTTTCT CCGACATCGGTAAGACTTTTTATATGTCGCGGTGTTGGCTTTTGGATGGA ATATCGTTGAGATTTTTTGCACTCAAAGTTATTTGAATTCCGAGTTGAGC CTAGAATTTGTTGAATTTCCCGTCTACCATTTCGCCGTTTACGTGATTAA ACTTACTTCAATTTTAATTATACAATTTCTTTCATAAGAACTTTCAACAT TTTTGAAAGGTGTATGCAGAGGTTTAACTGTCTGTTTATTTTTCTTTCAC TTTCCCCAGGAGCGATGATAGCGTTATGCGACATCAACGAGTACCGCCAC ACGATGAAAGAACTCAAAATCCCATTGGTCGAACGTTTGTTCGGTGTTTT GTTGGCCTTGTTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGAAG TGGGTAACGATGAACAGCTGGTAAGTGAGACCACGCCCTTCTTAATTAAG AGCCTCTTAAACATGGGTGGGGGTTGGCAAACGAATCAAACGTATATACT TCAATGTTTTACGAAAGTCCAGGTAGATTTTTAAACCAATCTTAAGTAGC TAGTAGGAAATGTAAATTAGTTATTCTTTATATCCTTTCTTATGTAACCA TTTTCATAGATATGAAAACAACAACACTTTTTAAACGTTTATTTTTTCAG GCGGATATCGACAAAGCCGTTCTTCAACAATTCGTTCAGCTTCGAGCCGA CTACAAACAACTCAAATTAGGGAAAGTGTTTACGTAAATTATTATTGTCA AATTGTCAAATATTTTTATTTTTTAATTTAGATTTATCCCATTGATGATG AAATTAATTAATGATTTTTACATCGAATACAATAGAATTATTTCATTGAT CAAATGCTACAAATCAACCTGCTTTCCCGAAGACATTGACAGGCCTCCTG TTAGTCTTTGAATTGTACATAGACAATTATTTTTTAAACTAAATACTACT ATAAATCCTGTGAAGAAGTTCTGGTCGATTCCTTTTTAACCCGTCACTGT CCCATAACGATTTNTTACGGCCTCGGCTATATATTAGAACGTAAATTTAC GGCCTCGGCGTGGTAAAGGTTAATGATTATTACATCGAAAACAATATAAT TATTTAATTGATCAAATGCTACAAATCAACCTGCTTTCCCGAAGACATTG ATAGGTCCCCTATTAGTCTTTGAATTGTACATAGACAATTATTTTTTTAA CAAAATACTACTGCTTTTATTAAGA

Coding sequence (CDS) from alignment at sc0000067:329203..333077-

>TCONS_00006495 ID=TCONS_00006495|Name=TCONS_00006495|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at sc0000067:329203..333077- (Clytia hemisphaerica)
GCGGATATCGACAAAGCCGTTCTTCAACAATTCGTTCAGCTTCGAGCCGA
CTACAAACAACTCAAATTAGGGAAAGTGTTTACGTAAGAGCGATGATAGC
GTTATGCGACATCAACGAGTACCGCCACACGATGAAAGAACTCAAAATCC
CATTGGTCGAACGTTTGTTCGGTGTTTTGTTGGCCTTGTTCAATTTGTTG
GTCGTCCAACCAGATAATCTGAAGGAAGTGGGTAACGATGAACAGCTGGC
TTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCCCCGAGTTAAGGC
TCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACGGAGTTTGGGACG
CGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATATATTTTCTCCGA
CATCGAGTGTTGAGTAGTATGGTGAACTACTTGAAGTTTTTGTTGAACTC
CGAACAAAAGAAGACAGATTTCCGTCCTGAAAACGAAACATTGGGAGCTA
TGGCGCAAACAACTATAGATAGATATGCCCTCCGATGCATCGGAATGGGT
CCTACCCACGATGGAGTAGGAATCACAGCGCAAGCAGACATTGCAACCCT
GCAGATGCGAGCTGCCGAGCCATGGTGTATACCATGCCACTCGAACTACA
CGGGAGAACGGATGTTCCCGCNTTCAGTGATTTACAGTAAATGCGCTTCA
CGAAAGAAAATACTGATTGACACTTTGGAAACCAAACTAAACCAAGGCAT
TGATAGGCGGATATCGACAAAGCCGTTCTTCAACAATTCGTTCAGCTTCG
AGCCGACTACAAACAACTCAAATTAGGGAAAGTGTTTACGTAAGAGCGAT
GATAGCGTTATGCGACATCAACGAGTACCGCCACACGATGAAAGAACTCA
AAATCCCATTGGTCGAACGTTTGTTCGGTGTTTTGTTGGCCTTGTTCAAT
TTGTTGGTCGTCCAACCAGATAATCTGAAGGAAGTGGGTAACGATGAACA
GCTGGCTTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCCCCGAGT
TAAGGCTCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACGGAGTTT
GGGACGCGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATATATTTT
CTCCGACATCGAGTGTTGAGTAGTATGGTGAACTACTTGAAGTTTTTGTT
GAACTCCGAACAAAAGAAGACAGATTTCCGTCCTGAAAACGAAACATTGG
GAGCTATGGCGCAAACAACTATAGATAGATATGCCCTCCGATGCATCGGA
ATGGGTCCTACCCACGATGGAGTAGGAATCACAGCGCAAGCAGACATTGC
AACCCTGCAGATGCGAGCTGCCGAGCCATGGTGTATACCATGCCACTCGA
ACTACACGGGAGAACGGATGTTCCCGCNTTCAGTGATTTACAGTAAATGC
GCTTCACGAAAGAAAATACTGATTGACACTTTGGAAACCAAACTAAACCA
AGGCATTGATAGGCGGATATCGACAAAGCCGTTCTTCAACAATTCGTTCA
GCTTCGAGCCGACTACAAACAACTCAAATTAGGGAAAGTGTTTACGTAAG
AGCGATGATAGCGTTATGCGACATCAACGAGTACCGCCACACGATGAAAG
AACTCAAAATCCCATTGGTCGAACGTTTGTTCGGTGTTTTGTTGGCCTTG
TTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGAAGTGGGTAACGA
TGAACAGCTGGCTTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCC
CCGAGTTAAGGCTCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACG
GAGTTTGGGACGCGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATA
TATTTTCTCCGACATCGAGTGTTGAGTAGTATGGTGAACTACTTGAAGTT
TTTGTTGAACTCCGAACAAAAGAAGACAGATTTCCGTCCTGAAAACGAAA
CATTGGGAGCTATGGCGCAAACAACTATAGATAGATATGCCCTCCGATGC
ATCGGAATGGGTCCTACCCACGATGGAGTAGGAATCACAGCGCAAGCAGA
CATTGCAACCCTGCAGATGCGAGCTGCCGAGCCATGGTGTATACCATGCC
ACTCGAACTACACGGGAGAACGGATGTTCCCGCNTTCAGTGATTTACAGT
AAATGCGCTTCACGAAAGAAAATACTGATTGACACTTTGGAAACCAAACT
AAACCAAGGCATTGATAGGCGGATATCGACAAAGCCGTTCTTCAACAATT
CGTTCAGCTTCGAGCCGACTACAAACAACTCAAATTAGGGAAAGTGTTTA
CGTAAGAGCGATGATAGCGTTATGCGACATCAACGAGTACCGCCACACGA
TGAAAGAACTCAAAATCCCATTGGTCGAACGTTTGTTCGGTGTTTTGTTG
GCCTTGTTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGAAGTGGG
TAACGATGAACAGCTGGCTTGTCAAAAGTGTTGTCGGTACATCAAAAACG
TGCTCCCCGAGTTAAGGCTCGGTTTAGATGGCAAGAATTTGGAATTGGTG
TTGACGGAGTTTGGGACGCGTTTTCATAAGCTGTTGTTGGATCACATGTA
CCAATATATTTTCTCCGACATCGAGTGTTGAGTAGTATGGTGAACTACTT
GAAGTTTTTGTTGAACTCCGAACAAAAGAAGACAGATTTCCGTCCTGAAA
ACGAAACATTGGGAGCTATGGCGCAAACAACTATAGATAGATATGCCCTC
CGATGCATCGGAATGGGTCCTACCCACGATGGAGTAGGAATCACAGCGCA
AGCAGACATTGCAACCCTGCAGATGCGAGCTGCCGAGCCATGGTGTATAC
CATGCCACTCGAACTACACGGGAGAACGGATGTTCCCGCNTTCAGTGATT
TACAGTAAATGCGCTTCACGAAAGAAAATACTGATTGACACTTTGGAAAC
CAAACTAAACCAAGGCATTGATAGGCGGATATCGACAAAGCCGTTCTTCA
ACAATTCGTTCAGCTTCGAGCCGACTACAAACAACTCAAATTAGGGAAAG
TGTTTACGTAAGAGCGATGATAGCGTTATGCGACATCAACGAGTACCGCC
ACACGATGAAAGAACTCAAAATCCCATTGGTCGAACGTTTGTTCGGTGTT
TTGTTGGCCTTGTTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGA
AGTGGGTAACGATGAACAGCTGGCTTGTCAAAAGTGTTGTCGGTACATCA
AAAACGTGCTCCCCGAGTTAAGGCTCGGTTTAGATGGCAAGAATTTGGAA
TTGGTGTTGACGGAGTTTGGGACGCGTTTTCATAAGCTGTTGTTGGATCA
CATGTACCAATATATTTTCTCCGACATCGAGTGTTGAGTAGTATGGTGAA
CTACTTGAAGTTTTTGTTGAACTCCGAACAAAAGAAGACAGATTTCCGTC
CTGAAAACGAAACATTGGGAGCTATGGCGCAAACAACTATAGATAGATAT
GCCCTCCGATGCATCGGAATGGGTCCTACCCACGATGGAGTAGGAATCAC
AGCGCAAGCAGACATTGCAACCCTGCAGATGCGAGCTGCCGAGCCATGGT
GTATACCATGCCACTCGAACTACACGGGAGAACGGATGTTCCCGCNTTCA
GTGATTTACAGTAAATGCGCTTCACGAAAGAAAATACTGATTGACACTTT
GGAAACCAAACTAAACCAAGGCATTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003686XLOC_003686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006495-exon-sc0000067-1575043694:332834..333077TCONS_00006495-exon-sc0000067-1575043694:332834..333077Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1575043694:332025..332133TCONS_00006495-exon-sc0000067-1575043694:332025..332133Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1575043694:330419..330575TCONS_00006495-exon-sc0000067-1575043694:330419..330575Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1575043694:330008..330168TCONS_00006495-exon-sc0000067-1575043694:330008..330168Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1575043694:329607..329777TCONS_00006495-exon-sc0000067-1575043694:329607..329777Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1575043694:329203..329344TCONS_00006495-exon-sc0000067-1575043694:329203..329344Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1510915933:332834..333077TCONS_00006495-exon-sc0000067-1510915933:332834..333077Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1510915933:332025..332133TCONS_00006495-exon-sc0000067-1510915933:332025..332133Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1510915933:330419..330575TCONS_00006495-exon-sc0000067-1510915933:330419..330575Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1510915933:330008..330168TCONS_00006495-exon-sc0000067-1510915933:330008..330168Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1510915933:329607..329777TCONS_00006495-exon-sc0000067-1510915933:329607..329777Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1510915933:329203..329344TCONS_00006495-exon-sc0000067-1510915933:329203..329344Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1491911889:332834..333077TCONS_00006495-exon-sc0000067-1491911889:332834..333077Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1491911889:332025..332133TCONS_00006495-exon-sc0000067-1491911889:332025..332133Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1491911889:330419..330575TCONS_00006495-exon-sc0000067-1491911889:330419..330575Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1491911889:330008..330168TCONS_00006495-exon-sc0000067-1491911889:330008..330168Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1491911889:329607..329777TCONS_00006495-exon-sc0000067-1491911889:329607..329777Clytia hemisphaericaexon
TCONS_00006495-exon-sc0000067-1491911889:329203..329344TCONS_00006495-exon-sc0000067-1491911889:329203..329344Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006495-proteinTCONS_00006495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:329203..333077 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.3187 54.755 35.2825 38.9742 88.551 63.0138 65.12 70.2865 38.0906 45.4278 33.9636 33.3772 30.3195 33.297 36.9712 39.2408 43.1457 48.4642 25.3699 30.5277 30.3676 39.3205 58.9511 48.0395 38.1776 36.6139 44.9951 42.553 46.8083 42.0892
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009976Sec10-like
Vocabulary: Biological Process
TermDefinition
GO:0048278vesicle docking
GO:0006887exocytosis
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006887 exocytosis
biological_process GO:0048278 vesicle docking
cellular_component GO:0005737 cytoplasm
Blast
BLAST of TCONS_00006495 vs. Swiss-Prot (Human)
Match: EXOC5 (Exocyst complex component 5 OS=Homo sapiens GN=EXOC5 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.532e-50
Identity = 94/194 (48.45%), Postives = 137/194 (70.62%), Query Frame = 3
Query:  174 SKCASRKKILIDTLETKLNQGIDRVLSSMVNYLKFLLNSEQKKTDFRPENETLGAMAQTTACQKCCRYIKNVLPELRLGLDGKNLELVLTEFGTRFHKLLLDHMYQYIFSDIGAMIALCDINEYRHTMKELKIPLVERXXXXXXXXXXXXXXQPDNLKEVGNDEQLADIDKAVLQQFVQLRADYKQLKLGKVFT 755
            S+C  +KK +I+ +E KL+ GIDR L+ M+  +K +L +EQKKTDF+PE+E    +  T AC K C Y++  + +++  +DGKN++ VL E G RFH+L+ +H+ QY +S +G M+A+CD+ EYR   K+ KIP+V  LF  L AL NLLVV PDNLK+V + EQLA++DK +L  FVQLRADY+  +L + F+
Sbjct:  515 SECLQKKKEIIEQMEMKLDTGIDRTLNCMIGQMKHILAAEQKKTDFKPEDENNVLIQYTNACVKVCAYVRKQVEKIKNSMDGKNVDTVLMELGVRFHRLIYEHLQQYSYSCMGGMLAICDVAEYRKCAKDFKIPMVLHLFDTLHALCNLLVVAPDNLKQVCSGEQLANLDKNILHSFVQLRADYRSARLARHFS 708          
The following BLAST results are available for this feature:
BLAST of TCONS_00006495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOC57.532e-5048.45Exocyst complex component 5 OS=Homo sapiens GN=EXO... [more]
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