TCONS_00006494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006494
Unique NameTCONS_00006494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006494 ID=TCONS_00006494|Name=TCONS_00006494|organism=Clytia hemisphaerica|type=transcript|length=851bp
atagatagatatgccctccgatgcatcggaatgggtcctacccacgatgg
agtaggaatcacagcgcaagcagacattgcaaccctgcagatgcgagctg
ccgagccatggtgtataccatgccactcgaactacacgggagaacggatg
tTCCCGCNTTCAGTGATTTACAGTAAATGCGCTTCACGAAAGAAAATACT
GATTGACACTTTGGAAACCAAACTAAACCAAGGCATTGATAGAGTGTTGA
GTAGTATGGTGAACTACTTGAAGTTTTTGTTGAACTCCGAACAAAAGAAG
ACAGATTTCCGTCCTGAAAACGAAACATTGGGAGCTATGGCGCAAACAAC
TGCTTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCCCCGAGTTAA
GGCTCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACGGAGTTTGGG
ACGCGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATATATTTTCTC
CGACATCGGAGCGATGATAGCGTTATGCGACATCAACGAGTACCGCCACA
CGatgaaagaactcaaaatcCCATTGGTCGAACGTTTGTTCGGTGTTTTG
TTGGCCTTGTTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGAAGT
GGGTAACGATGAACAGCTGatTTATCCCATTGATGATGAAATTAATTAAT
GATTTTTACATCGAAAACAATATAATTATTTAATTGATCAAATGCTACAA
ATCAACCTGCTTTCCCGAAGACATTGATAGGTCCCCTATTAGTCTTTGAA
TTGTACATAgacaattatttttttaacaaaatactACTGCTTTTATTAAG
A
Run BLAST on NCBI

transcript from alignment at sc0000067:329203..333075-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006494 ID=TCONS_00006494|Name=TCONS_00006494|organism=Clytia hemisphaerica|type=transcript|length=3873bp|location=Sequence derived from alignment at sc0000067:329203..333075- (Clytia hemisphaerica)
ATAGATAGATATGCCCTCCGATGCATCGGAATGGGTCCTACCCACGATGG
AGTAGGAATCACAGCGCAAGCAGACATTGCAACCCTGCAGATGCGAGCTG
CCGAGCCATGGTGTATACCATGCCACTCGAACTACACGGGAGAACGGATG
TTCCCGCNTTCAGTGATTTACAGTAAATGCGCTTCACGAAAGAAAATACT
GATTGACACTTTGGAAACCAAACTAAACCAAGGCATTGATAGGTGATGAT
TCTGTCTTAATATTTTATTACTTCCTTGCTTTAAACCAGCATGTCAAAGT
TTCCATAGAAAATACATGTTTGATAAACACTATTTATCAAAAGATAACGA
TGATGATTGATTTTCCTTCAAAATACATGATTGATTTTCCTTTAAAATAT
AAGGCTTCTTTTCTTAAAAATGCAAAAAATTGTTAAATTTTCCTTTAACA
TATACATATTGTTTATTTTGCTTAAAAAATGACATGGTTGATTTTCCTAA
ATTTTCCTTGGGCCCTACTTTCTCTCAAAGTTCTTTAAATTAAAGGGGCA
TTAAAGTAGTAAAATGTAAACATTGTGCGAACCACGTGTCATTAAAGAGA
ACAATTAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
TTGATTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCGCTG
CATACAGTTTGTTTACAAATTTTGCAAGTACTGTTATGTCCCTTTAAATC
ATATATTGTTGATAGTTTTTTATTTATTTCGTTTTTTTGCAGAGTGTTGA
GTAGTATGGTGAACTACTTGAAGTTTTTGTTGAACTCCGAACAAAAGAAG
ACAGATTTCCGTCCTGAAAACGAAACATTGGGAGCTATGGCGCAAACAAC
TGTAAGGAGACCCTGTTATTTTTGTAGTTTCTCTCTGATAAAACGTTCTC
CCAAATATTACATAGCGTCAGCCCCCCCCCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACCCTAAATTTTTCCCAAA
AGAGGAGGGGGCTGGAAGTACACCACTTTTTTGGGGGGACCTATGTACTT
GGGGGGAGCTAAAATCTCATCACTTAACGTGGGGTCTAAAATAATTCAGC
TTCATAGTTGGCTTCAATTACTCAAATCGGAGCTCATGAATCTGAAAAAT
TTTCGCCTACGGCGCAATATTTTTGTAGAAAGTGTGCAAAATTATTTATC
TTAAACTTAGAACTGAACGCAATTTACATTGGAATAACCTTTTTTACTGG
ATCAATTTTTTGAAAGTGTCTTGGGTCAAAAGTCCTGGGGGCTAACGAAA
AATTCATAAATCTTTGGGGGGACTTAAAATTCAGGGGGGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGGG
GCTAAAATAATTCAGCTTAATAGTTGGCTTCAATTACTCAAATTGAAGCT
CATGAATCTGAAAAATTTTCGCCTGCTGTGCAATATTTTTGTAGAAAGTG
TGCAAAATTATTTATCTTAAACTTAGAACTGAACGCAATTTACATTGGAA
TAACCTTTTTTACTGGATCAATTTTTTGAAAGTGTCTAGGGTCAAAAGTC
CTGGGGGCTAACGAAAAATTCATAAATCTTTGGGGAGACTTAAAATTCAG
GGGGGACCTAGTTTTTGCCTGGGACCTAAACCCAGGCTGACGCTATGTAT
TACCCGCTTTGAAAATCTACTCTAAGAAAACAAAATGGTTGGGTCAGAGT
TTCGCACGGTTTTTTTAATTGTTAGATCATATTTGATGTTCCTTTCAACA
ATTCATTTCATCAATTACTCTGAAGGCACACACAAAAATCCTTTCTTCGA
GTAATTGGTCTAAATCTGCTTAACAGACACTCATCTTCTTGAACCTACAG
GCTTGTCAAAAGTGTTGTCGGTACATCAAAAACGTGCTCCCCGAGTTAAG
GCTCGGTTTAGATGGCAAGAATTTGGAATTGGTGTTGACGGAGTTTGGGA
CGCGTTTTCATAAGCTGTTGTTGGATCACATGTACCAATATATTTTCTCC
GACATCGGTAAGACTTTTTATATGTCGCGGTGTTGGCTTTTGGATGGAAT
ATCGTTGAGATTTTTTGCACTCAAAGTTATTTGAATTCCGAGTTGAGCCT
AGAATTTGTTGAATTTCCCGTCTACCATTTCGCCGTTTACGTGATTAAAC
TTACTTCAATTTTAATTATACAATTTCTTTCATAAGAACTTTCAACATTT
TTGAAAGGTGTATGCAGAGGTTTAACTGTCTGTTTATTTTTCTTTCACTT
TCCCCAGGAGCGATGATAGCGTTATGCGACATCAACGAGTACCGCCACAC
GATGAAAGAACTCAAAATCCCATTGGTCGAACGTTTGTTCGGTGTTTTGT
TGGCCTTGTTCAATTTGTTGGTCGTCCAACCAGATAATCTGAAGGAAGTG
GGTAACGATGAACAGCTGGTAAGTGAGACCACGCCCTTCTTAATTAAGAG
CCTCTTAAACATGGGTGGGGGTTGGCAAACGAATCAAACGTATATACTTC
AATGTTTTACGAAAGTCCAGGTAGATTTTTAAACCAATCTTAAGTAGCTA
GTAGGAAATGTAAATTAGTTATTCTTTATATCCTTTCTTATGTAACCATT
TTCATAGATATGAAAACAACAACACTTTTTAAACGTTTATTTTTTCAGGC
GGATATCGACAAAGCCGTTCTTCAACAATTCGTTCAGCTTCGAGCCGACT
ACAAACAACTCAAATTAGGGAAAGTGTTTACGTAAATTATTATTGTCAAA
TTGTCAAATATTTTTATTTTTTAATTTAGATTTATCCCATTGATGATGAA
ATTAATTAATGATTTTTACATCGAATACAATAGAATTATTTCATTGATCA
AATGCTACAAATCAACCTGCTTTCCCGAAGACATTGACAGGCCTCCTGTT
AGTCTTTGAATTGTACATAGACAATTATTTTTTAAACTAAATACTACTAT
AAATCCTGTGAAGAAGTTCTGGTCGATTCCTTTTTAACCCGTCACTGTCC
CATAACGATTTNTTACGGCCTCGGCTATATATTAGAACGTAAATTTACGG
CCTCGGCGTGGTAAAGGTTAATGATTATTACATCGAAAACAATATAATTA
TTTAATTGATCAAATGCTACAAATCAACCTGCTTTCCCGAAGACATTGAT
AGGTCCCCTATTAGTCTTTGAATTGTACATAGACAATTATTTTTTTAACA
AAATACTACTGCTTTTATTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003686XLOC_003686Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006494-exon-sc0000067-1575043694:332834..333075TCONS_00006494-exon-sc0000067-1575043694:332834..333075Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1575043694:332025..332133TCONS_00006494-exon-sc0000067-1575043694:332025..332133Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1575043694:330419..330575TCONS_00006494-exon-sc0000067-1575043694:330419..330575Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1575043694:330008..330168TCONS_00006494-exon-sc0000067-1575043694:330008..330168Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1575043694:329607..329646TCONS_00006494-exon-sc0000067-1575043694:329607..329646Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1575043694:329203..329344TCONS_00006494-exon-sc0000067-1575043694:329203..329344Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1510915933:332834..333075TCONS_00006494-exon-sc0000067-1510915933:332834..333075Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1510915933:332025..332133TCONS_00006494-exon-sc0000067-1510915933:332025..332133Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1510915933:330419..330575TCONS_00006494-exon-sc0000067-1510915933:330419..330575Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1510915933:330008..330168TCONS_00006494-exon-sc0000067-1510915933:330008..330168Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1510915933:329607..329646TCONS_00006494-exon-sc0000067-1510915933:329607..329646Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1510915933:329203..329344TCONS_00006494-exon-sc0000067-1510915933:329203..329344Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1491911889:332834..333075TCONS_00006494-exon-sc0000067-1491911889:332834..333075Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1491911889:332025..332133TCONS_00006494-exon-sc0000067-1491911889:332025..332133Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1491911889:330419..330575TCONS_00006494-exon-sc0000067-1491911889:330419..330575Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1491911889:330008..330168TCONS_00006494-exon-sc0000067-1491911889:330008..330168Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1491911889:329607..329646TCONS_00006494-exon-sc0000067-1491911889:329607..329646Clytia hemisphaericaexon
TCONS_00006494-exon-sc0000067-1491911889:329203..329344TCONS_00006494-exon-sc0000067-1491911889:329203..329344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:329203..333075 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8847	18.9072	17.5353	14.5689	20.6001	22.313	19.4717	22.6136	17.6821	18.0789	17.2725	12.8516	13.8025	13.4972	17.486	18.0915	21.1447	17.652	13.2293	20.8226	14.9721	8.93319	11.3258	16.361	9.19976	16.3173	11.8457	13.6829	12.2879	14.4551
Blast
[Close]
BLAST of TCONS_00006494 vs. Swiss-Prot (Human)
Match: EXOC5 (Exocyst complex component 5 OS=Homo sapiens GN=EXOC5 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.707e-39
Identity = 80/166 (48.19%), Postives = 116/166 (69.88%), Query Frame = 1 
Query:  172 SKCASRKKILIDTLETKLNQGIDRVLSSMVNYLKFLLNSEQKKTDFRPENETLGAMAQTTACQKCCRYIKNVLPELRLGLDGKNLELVLTEFGTRFHKLLLDHMYQYIFSDIGAMIALCDINEYRHTMKELKIPLVERXXXXXXXXXXXXXXQPDNLKEVGNDEQL 669
            S+C  +KK +I+ +E KL+ GIDR L+ M+  +K +L +EQKKTDF+PE+E    +  T AC K C Y++  + +++  +DGKN++ VL E G RFH+L+ +H+ QY +S +G M+A+CD+ EYR   K+ KIP+V  LF  L AL NLLVV PDNLK+V + EQL
Sbjct:  515 SECLQKKKEIIEQMEMKLDTGIDRTLNCMIGQMKHILAAEQKKTDFKPEDENNVLIQYTNACVKVCAYVRKQVEKIKNSMDGKNVDTVLMELGVRFHRLIYEHLQQYSYSCMGGMLAICDVAEYRKCAKDFKIPMVLHLFDTLHALCNLLVVAPDNLKQVCSGEQL 680
The following BLAST results are available for this feature:
BLAST of TCONS_00006494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOC52.707e-3948.19Exocyst complex component 5 OS=Homo sapiens GN=EXO... [more]
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