|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006489 ID=TCONS_00006489|Name=TCONS_00006489|organism=Clytia hemisphaerica|type=transcript|length=2255bpRun BLAST on NCBI transcript from alignment at sc0000067:268694..277118- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006489 ID=TCONS_00006489|Name=TCONS_00006489|organism=Clytia hemisphaerica|type=transcript|length=8425bp|location=Sequence derived from alignment at sc0000067:268694..277118- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006489 vs. Swiss-Prot (Human)
Match: MFSD8 (Major facilitator superfamily domain-containing protein 8 OS=Homo sapiens GN=MFSD8 PE=1 SV=1) HSP 1 Score: 288.886 bits (738), Expect = 1.355e-87 Identity = 180/490 (36.73%), Postives = 276/490 (56.33%), Query Frame = 3
Query: 237 ESQKEYKQRWRSIRILYATMFFDSLSFSIVLSSIWPYMKKINPDPNLSPVYAGWANVGFQLAGILMDFVMGVWTNRRGSTEPXXXXXXXXXXXXXXXXXXQACGTYGIAMVIFSRAVIGLSTGXXXXXXXXXXXXXXLKERTKVMAHMSIAQGLGFSFGPAIQLASVPLGDDGIYIESLRLHLDLYTAPAFVSVVVAILNVTAVLVWYKEFHVDIYHDSQDDHKIDSYRQLLQKHG-APKIKIDKKAILATLFLYFVVQNAFALHETIFTPLAMDQFAWTRSQATLWVGIIFFIAGCIAVFTFAITDVLEKKINDRKXXXXXXXXXXXXXXVYLPWGNNYPKLK------QSVFKNTIGEXXXXXXXXXXXAGHQKALVDFVGCPEEYTWCHDTPQMHLSQLVLGMLCLSVGYPLVMVLTTSIYSKIIGPKPQGLLQSWLAAVGGVARTAGPALVTYMYVLAGPRWTFLTVDGFLIAALLVIAVCYKRLV 1685
E+++ YK RWRSIRILY TMF S+ FS+V+ SIWPY++KI+P + S + GW + L ++ + G+W+N R EPL+ ++ + N LY Y ++ ++ +R ++G+ G V R A AT+L+ERT MA++S+ Q LGF GP Q LG+ G+ + ++L +++YT P +S + ILN+ +L +E VD DS K ++ + P+ ID+ A++A L+FV FAL ETI TPL MD +AWT+ QA L+ GII G AV F +L KKI +R +LL G I+ ++GF + LPWGN +PK++ S+ T GE+ +++ GC E WC TP +HL+Q + + + +GYP+ +++ ++YSKI+GPKPQG+ WL A G AR GP ++ +Y GPRW F V G ++ + ++ V YKRL+
Sbjct: 27 ETEEHYKSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPTADTS--FLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILREHRVD---DSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERP----TGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLI 507 The following BLAST results are available for this feature:
BLAST of TCONS_00006489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.