TCONS_00006488 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006488
Unique Name	TCONS_00006488
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2187

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000067:268694..274069-

transcript sequence

>TCONS_00006488 ID=TCONS_00006488|Name=TCONS_00006488|organism=Clytia hemisphaerica|type=transcript|length=2187bp
GTTTGAAgatataaagttttttaaacGTGTATTTTTGGTAACTGAATATT
TTAAGTGACTGACAAGACGTAGAGCAACAGATCTGTTGATAAGAATTTTC
CAGTCTTGACAGCAATGACCGGCGAAGATACCAGgGATCTGGTACTGGAA
GACAGTTTGGTTTCAAAAGAATCACAAAAAGAATATAAGCAGAGATGGCG
CTCCATACGAATTCTTTATGCTACGATGTTCTTCGACAGTCTCTcttttt
ccatcGTTTTATCGTCCATCTGGCCGTACATGAAAAAGATAAACCCTGAT
CCAAATCTCAGTCCTGTATACGCTGGTTGGGCCAATGTTGGATTCCAACT
GGCTGGTATTTTAATGGACTTCGTCATGGGTGTGTGGACCAACCGACGCG
GCTCCACTGAACCCCTACTTGGTGCTTTATTTCTGTTTGCCCTTGGTAAC
TTATTGTATGGATACGCACAAGCTTGTGGAACCTATGGCATTGCCATGGT
GATATTTTCCAGAGCTGTCATTGGCTTATCCACAGGAACGAACGTGGTGA
CACGTGTTGTTGCAGCAGAAGCTACCACATTGAAAGAACGAACCAAAGTG
ATGGCTCACATGTCCATTGCACAAGGTCTTGGTTTCTCATTCGGACCAGC
TATCCAACTAGCGAGTGTTCCACTTGGAGATGATGGAATATACATCGAAT
CCTTGCGTTTACATTTGGATCTTTACACGGCACCGGCATTCGTGAGTGTG
GTGGTAGCCATTTTGAATGTCACTGCAGTGTTGGTATGGTACAAAGAATT
CCATGTGGATATTTATCACGATAGTCAGGATGATCATAAGATTGACAGCT
ACCGTCAACTGCTGCAGAAACACGGTGCACCAAAAATAAAGATCGACAAG
AAAGCCATCCTCGCCACTCTCTTCTTGTATTTTGTCGTTCAGAACGCGTT
CGCTCTCCATGAAACGATTTTCACACCACTTGCCATGGATCAATTTGCTT
GGACTCGTTCTCAGGCCACTTTGTGGGTTGGCATCATTTTCTTCATCGCT
GGATGTATTGCAGTCTTTACTTTCGCAATCACTGACGTCTTAGAGAAAAA
GATCAACGATCGGAAACTTCTTCTCTTCGGATTCATCCTGACATTTATCG
GATTCACCGTTTATTTACCATGGGGAAATAATTATCCTAAGTTGAAACAA
TCAGTATTCAAAAACACCATTGGGGAACTTAACACGAATAATACAGTACT
GAACACAACAGCTGGCCATCAGAAAGCTTTGGTCGATTTTGTTGGATGTC
CTGAGGAATACACTTGGTGTCACGATACTCCACAGATGCATTTGTCGCAG
CTGGTGTTGGGAATGTTGTGTCTGTCTGTTGGTTATCCTCTAGTCATGGT
CTTAACCACTTCTATATATTCAAAAATCATCGGACCTAAACCACAGGGTT
TGCTTCAAAGTTGGCTTGCAGCAGTCGGCGGCGTCGCAAGAACGGCTGGT
CCCGCGTTAGTGACTTATATGTATGTTTTAGCTGGTCCTCGATGGACCTT
CCTGACAGTTGATGGTTTTCTGATAGCAGCTCTTCTGGTGATTGCTGTGT
GTTATAAAAGACTTGTGCCATACCatttgatggttttgaagaaaaataaa
aacattatttcGACGGATATTGAAAAGAATCAAATGTTGAGTCGATTGCA
ATCTTGCAGTTCCGCTGAAACGTATCTGGAAGATGCTAATGAGATTCTGA
CTGTTGTTTGATCACCGAGGTGGAGTGTCTATTGATTTTTATAAGGACTA
TCTTGTACGATGACACTCCTCCATTGTGTTGATCGGAAATTATGGGGATG
GACGGATTGGGagtaatgaaaaatgaaaactttagaTTTTGTACATATTC
TATAAATAGATCAcaaatttatacaaaatatttttttctgtttcaaagtt
atattttttgtaaatgataaaacatgaaatttgataaaaaaaaatggtCG
CTCAAATCCCTTTCAGACTTTTAAGAATAAAAGTCGTgatattttggtat
tttgaatttattctgaaaacaaggcaaattttcaCTAACGCTGGCGTTGG
TGGGAAATCATCAGGGATAAGAAAGTTTGTGTCATGATCAAAAAATAACT
TTAATTGTTAGTTATGCAATTAAATAAATCTTGAAAT

Run BLAST on NCBI

transcript from alignment at sc0000067:268694..274069-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006488 ID=TCONS_00006488|Name=TCONS_00006488|organism=Clytia hemisphaerica|type=transcript|length=5376bp|location=Sequence derived from alignment at sc0000067:268694..274069- (Clytia hemisphaerica)
GTTTGAAGATATAAAGTTTTTTAAACGTGTATTTTTGGTAACTGAATATT
TTAAGTGACTGACAAGACGTAGAGCAACAGATCTGTTGATAAGAATTTTC
CAGTCTTGACAGCAATGACCGGCGAAGATACCAGGTACAGAAATTATCTT
TAAAGAATTATGGCTTTGCTCACTGGCGCTCGTTGGTTTTATATCTGAAG
AGAAAGTTTTTCGAGTTTTAGGATTTCAAACTTGTTTCTTTCGTGACAAT
TTTCAAAGTAGTTTAATGCTTTAATTCTTTAGAACTTTATTTTCAGTACA
CCCTTTATAAACTTTTTTTTTCCGCGCGTGACAGTCAGAGCGAACGAGGG
TATATATACGAGAAACGTTATACAGTACCCACTAACAAGATTAAAGACCT
TTTTAGAAACATACATTGACAATTGTTATTAAACATTCATTGCTCTTTCC
CATGCATTTTGAAATTACTTATGTCTCCTTGGTATTATAAAGCACACCAA
GACACTCTGTGTGAATGTAGTGATCTGAAGGAAACCGCTTTTATTTTACT
CCATAAAATCTTGATAAAGAGCACCCCAAGCACCCTGGTGTGGTTTACTT
TCTATGAAATGTTACAGTAGATATTTAATAACAAGTTTTGTTACGCATGT
AATACCTCAGCACAGTGTTGTGATTAGATTTGTAAGCTTTTCACATTGTA
GCGCTCTACGGGACACAGTATCTGCATTTTTTGCAGGCAATATAAAGTTT
ATCGCCCGAAACACAGCAGGGTGGCTCACATTATTACTTTAAAACGATCA
CCAATGCAGTAATCTAGCCTCGTTTCAATTTAATATCCCAACACAGCTTG
AAACTCGGTTGCTTATTGATTCCGAGGCTAGATATGCTGTACGGACGTTC
ATAAGATGTCATCCTCTGTCGTTCAATGTACGGCCAAAAGACGTATATTC
TGACTCATGACGTCAAATCGGAAAAACAAATTCATATTAAATTGAGGAAA
TTTGCGGGATTGTTTTTCACCAGAATACCTTCTGTTAAAAGTGTTTCGGT
TTATGAAACAAGAAATTCCTGAAGCGACTGTGTGAAAATTTGTTATCTTT
TGATATTTCAAGATAAAAGGATATTTATAAAAAGAAATTTCAAACAACCA
TAGATATCGGGGATTTTTAAATAAAGTGTTATTTATTCGACGAACTTGGT
GTAAGCAAGCAACAGGTCTTTGCATTCAAAAGGACCAGTCCGTTGAAAGT
TTGTCACGATGAAGGGCCCGTATAAGAAACGGTAAGCAAACTCATGTAGA
ATAATTTCACGAAAGTGTTTTATATATTTTGTATCCAAACCAAAGAAGAT
AAGAGGATCTGAAAAATATATATTCTTCTTTTTCTCATCTTTAGGGATCT
GGTACTGGAAGACAGTTTGGTTTCAAAAGAATCACAAAAAGAATATAAGC
AGAGATGGCGCTCCATACGAATTCTTTATGCTACGATGTTCTTCGACAGT
CTCTGTAAGTATTGAGCGCCAATGCCAACATATTGTACATCCGGGTGAAA
TCGCTAACAATACAGAAATGCAGAATTTTGCAAATTTGGGTGTTAGAGAA
TTCTAGACTCCCACATTGGTCTTGAGAAGAAACACCACTACACTTTCTAT
TCGTTTATATGTCGCAAATTCATTGAAATTTAAAGCGCATGACTTGTTGT
GATTGTGGTTGTTTAAGTGACCATTGACTGTTGCGGTCCTTAAGGTGTAA
GCCCTATGCACACTTTTACACGCAAGGGAAAACAAAAACATTATGGTAGG
GTTTAGTGATGCCACAATGTGGTTACCGATNCAGTTTTACACGCAACGGA
AAACAAAAACATTATGGTAGGGTTTAGTGATGCCACAATGTGGTTACCGA
TCTTGACGACGTTTCCTTTCCCCTTTGTAACCGGTTATTGCTTGTTTTTA
TTTTCAGCTTTTTCCATCGTTTTATCGTCCATCTGGCCGTACATGAAAAA
GGTACAAAAACTTCACATTTTAATTCTTTGAGACCTACACGCTAGACCTA
CACTTGACAATGAGAAACTTTTATGATACTTGTGATAACCTTCTTCGATA
GTAAGCTGCAAATTCCGTGGAGAGAAATGAAAATGTGTGTGTATTGTCCT
AATGTTCTTCGCACAAAAATTTTGACCCTTATCAAAAGCAAAACTCCACT
AATCGAATGGTATCTGTATTTTCATTGTAGATAAACCCTGATCCAAATCT
CAGTCCTGTATACGCTGGTTGGGCCAATGTTGGATTCCAACTGGCTGGTA
TTTTAATGGACTTCGTCATGGGTGTGTGGACCAACCGACGCGGCTCCACT
GAACCCCTACTTGGTGCTTTATTTCTGTTTGCCCTTGGTAACTTATTGTA
TGGATACGCACAAGCTTGTGGAACCTATGGCATTGCCATGGTGATATTTT
CCAGAGCTGTCATTGGCTTATCCACAGGTAAGTTTGACGTCATCATTTGG
ACAAAGATATTGATTGAAGATGAACTACTTTATTTTTAATCGCGCTAGAA
TTATGAAAAAATCGATTTTTTTCTTGATAGAAGTCCTTAGTGAGAAAGAG
TCCAAGGGCTCATAATCGCTATAAATGTGCCTACTAAGACGCAAAAACTA
ATAATCGATTTACAACTGACCATGTCATCAATCCATTCTCACATACAGGA
ACGAACGTGGTGACACGTGTTGTTGCAGCAGAAGCTACCACATTGAAAGA
ACGAACCAAAGTGATGGCTCACATGTCCATTGCACAAGGTCTTGGTTTCT
CATTCGGACCAGGTAAGATAAGTACTAGTCTGTGGAAGATGCTGTTTTAT
TAGGAAGTTCGCAAAAGGTTTTAGTTGTTGGCGAGTGAAATTTATATCCA
CAAAGATATTAATGATCCATGTCTTTGACAAATTATGATAATCGTTTCGT
TTTCTTTGCAGCTATCCAACTAGCGAGTGTTCCACTTGGAGATGATGGAA
TATACATCGAATCCTTGCGTTTACATTTGGATCTTTACACGGCACCGGCA
TTCGTGAGTGTGGTGGTAGCCATTTTGAATGTCACTGCAGTGTTGGTATG
GTACAAAGAATTCCATGTGGATATTTATCACGATAGTCAGGATGATCATA
AGATTGACAGCTACCGTAAGTCGTTTGAATTTCTTTTTTCCTTTTCTGAA
CTTCATTTTCTTTCCAAAACAGCTAATGAAGTGATTTTTTGATAATAACT
GCAAATGTACACAACCTTTGCTTCTGAGATCCTTCTGAAGTAACTACGGA
AAGTTAGTTCATAATAATATCCATCCCTCGATTAATATTTCAAACTATTC
CCGTCTGCTCTTCAGGTCAACTGCTGCAGAAACACGGTGCACCAAAAATA
AAGATCGACAAGAAAGCCATCCTCGCCACTCTCTTCTTGTATTTTGTCGT
TCAGAACGCGTTCGCTCTCCATGAAACGTAAGCAAAAACACTTCATATAA
TTTCATGGTCAGAGGTTGCCTCCTTTTTTCTATCGCATACTTACTACAAA
ATCTATAAGGAATCGAAATCTTTGCTTGATGTTTTCTGGACGACGTTTGT
GAGAATTTACCCTGGTTAAATGTATTTAACTAAACTCAACTCGAAAGGCT
CTCAAAAAGTGTAACAATTCAATCATGTCATAATATCTTTTCTCCTTTTA
GGATTTTCACACCACTTGCCATGGATCAATTTGCTTGGACTCGTTCTCAG
GCCACTTTGTGGGTTGGCATCATTTTCTTCATCGCTGGATGTATTGCAGT
CTTTACTTTCGCAATCACTGACGTCTTAGAGAAAAAGTAAGGAAACTAAC
TTTTTCAATGAGAAATTCAAGGTATCATGAGTAGGAATCTTCAAAAACTT
TTGCCAGACGCAAAAAATCGCAGAACTTTCGTTGTAATACTAGTTAACTC
TATCATTCTGTTATCAACGAATCTTAGGTGAACTCTTTAAACGTTTTGTC
AAAGATATGATTAAAAGAATTGCCTGAAAGGCTGAAATACCACCAAACTC
ATATTTTTGCATTTTCTTTTATTCAGGATCAACGATCGGAAACTTCTTCT
CTTCGGATTCATCCTGACATTTATCGGATTCACCGTTTATTTACCATGGG
GAAATAATTATCCTAAGTTGAAACAATCAGTATTCAAAAACACCATTGGG
GAACTTAACACGAATAATACAGTACTGAACACAACAGCTGGCCATCAGAA
AGCTTTGGTCGATTTTGTTGGATGTCCTGAGGAATACACTTGGTGTCACG
ATACTCCACAGATGCATTTGTCGCAGCTGGTGTTGGGAATGTTGTGTCTG
TCTGTTGGTTATCCTCTAGTCATGGTCTTAACCACTTCTATATATTCAAA
AATCATCGGACCTAAACCACAGGTAAATGTCAAGCTCAATTCTGTTTTAT
TCAACATCTTTGTTCTCGCTTTTGTTAAGTCGAGAATATTCCCTACAGTT
TCGCCTTCCCAACCTGCATCACTGTCTTGTAAAGGCTAAAAGTTGTGAAC
AAATGACGATGCTCGTATATACCGATGTGACTCATTCTGACCCGTTAAGT
TCAAAACTATATCCACTGTTTTTCGTTTTATTTAGGGTTTGCTTCAAAGT
TGGCTTGCAGCAGTCGGCGGCGTCGCAAGAACGGCTGGTCCCGCGTTAGT
GACTTATATGTATGTTTTAGCTGGTCCTCGATGGACCTTCCTGACAGTTG
ATGGTTTTCTGATAGCAGCTCTTCTGGTGATTGCTGTGTGTTATAAAAGA
CTTGTGCCATACCATTTGATGGTTTTGAAGAAAAATAAAAACATTATTTC
GACGGATATTGAAAAGAATCAAATGTTGAGTCGATTGCAATCTTGCAGTT
CCGCTGAAACGTATCTGGAAGATGCTAATGAGATTCTGACTGTTGTTTGA
TCACCGAGGTGGAGTGTCTATTGATTTTTATAAGGACTATCTTGTACGAT
GACACTCCTCCATTGTGTTGATCGGAAATTATGGGGATGGACGGATTGGG
AGTAATGAAAAATGAAAACTTTAGATTTTGTACATATTCTATAAATAGAT
CACAAATTTATACAAAATATTTTTTTCTGTTTCAAAGTTATATTTTTTGT
AAATGATAAAACATGAAATTTGATAAAAAAAAATGGTCGCTCAAATCCCT
TTCAGACTTTTAAGAATAAAAGTCGTGATATTTTGGTATTTTGAATTTAT
TCTGAAAACAAGGCAAATTTTCACTAACGCTGGCGTTGGTGGGAAATCAT
CAGGGATAAGAAAGTTTGTGTCATGATCAAAAAATAACTTTAATTGTTAG
TTATGCAATTAAATAAATCTTGAAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003684	XLOC_003684	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000067	supercontig	sc0000067:268694..274069 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.99452e-08	0	0	0	12.0746	5.6882	3.15522	0.26047	1.29175	5.33766	0	1.67261	3.84896	3.23441	0.362993	0	3.48507	2.52144	12.2243	11.0853	6.16736	2.8774	5.49911	4.39842	0.00340361	2.89123	5.62249	0.995309	0	4.39881e-06

Blast

[Close]

BLAST of TCONS_00006488 vs. Swiss-Prot (Human)
Match: MFSD8 (Major facilitator superfamily domain-containing protein 8 OS=Homo sapiens GN=MFSD8 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.764e-88
Identity = 184/516 (35.66%), Postives = 287/516 (55.62%), Query Frame = 1

Query:  106 LTAMTGEDTRDLVLEDSLVSKE-----SQKEYKQRWRSIRILYATMFFDSLSFSIVLSSIWPYMKKINPDPNLSPVYAGWANVGFQLAGILMDFVMGVWTNRRGSTEPXXXXXXXXXXXXXXXXXXQACGTYGIAMVIFSRAVIGLSTGXXXXXXXXXXXXXXLKERTKVMAHMSIAQGLGFSFGPAIQLASVPLGDDGIYIESLRLHLDLYTAPAFVSVVVAILNVTAVLVWYKEFHVDIYHDSQDDHKIDSYRQLLQKHG-APKIKIDKKAILATLFLYFVVQNAFALHETIFTPLAMDQFAWTRSQATLWVGIIFFIAGCIAVFTFAITDVLEKKINDRKXXXXXXXXXXXXXXVYLPWGNNYPKLK------QSVFKNTIGEXXXXXXXXXXXAGHQKALVDFVGCPEEYTWCHDTPQMHLSQLVLGMLCLSVGYPLVMVLTTSIYSKIIGPKPQGLLQSWLAAVGGVARTAGPALVTYMYVLAGPRWTFLTVDGFLIAALLVIAVCYKRLV 1617
            +  +  E  ++ +L D+  S+E     +++ YK RWRSIRILY TMF  S+ FS+V+ SIWPY++KI+P  + S  + GW    + L  ++   + G+W+N R   EPL+ ++ +    N LY Y     ++    ++ +R ++G+  G   V R   A AT+L+ERT  MA++S+ Q LGF  GP  Q     LG+ G+  + ++L +++YT P  +S  + ILN+  +L   +E  VD   DS    K  ++ +        P+  ID+ A++A   L+FV    FAL ETI TPL MD +AWT+ QA L+ GII    G  AV  F    +L KKI +R +LL G I+ ++GF + LPWGN +PK++       S+   T GE+            +++      GC  E  WC  TP +HL+Q +   + + +GYP+  +++ ++YSKI+GPKPQG+   WL A G  AR  GP  ++ +Y   GPRW F  V G ++  + ++ V YKRL+
Sbjct:    1 MAGLRNESEQEPLLGDTPGSREWDILETEEHYKSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPTADTS--FLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILREHRVD---DSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERP----TGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLI 507

The following BLAST results are available for this feature:

BLAST of TCONS_00006488 vs. Swiss-Prot (Human)

BLAST of TCONS_00006488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MFSD8	1.764e-88	35.66	Major facilitator superfamily domain-containing pr...	[more]

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TCONS_00006488 (transcript) - C. hemisphaerica