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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006485 ID=TCONS_00006485|Name=TCONS_00006485|organism=Clytia hemisphaerica|type=transcript|length=1775bp
ACCTAATTTTGATTTAGATTGAAAAAGGTACAGATATACGTAACATGTCG
GCGGTCATATAGATAACACTAGACTGTAATGAAATACAAAGACATCAAAG
TGATTGCTCACGGCCTTACCTGCTATCTTGCTCCAACAACAGATGAAACA
GTGAGGGTACTCAGTATTCATGGTCTTCATTTCCGTCAATGGACAATTAT
GTGATCCATCGTTCAACACACAAGGTTGATGGCCTTGTTTTGTGTAAAAC
TCTGGTCTGCCATCTTTCCCAATCATACACCTTCCGTCTTTCCAAGGTCC
TGTCTGTTTCGTACTATGCTTATTAGAATTGTTTATGATTACACCAGACG
GTTTTGCTGCGACCAAACAAGTAAACaagacaaaaatcaggaaaaaagtG
TTCACTATGGACTTATCCAAGGGCGCTCTTGTGTCGCAACCGCAGCCGAA
AGACATGATTATAATCTACAAATCCTCTTAATTTGTGATATAAGTTTCTT
gattaaagtaaaaatattgttaaagaAAGATGCTTTCAAGCTCCTTTCCT
CTCGGCAGCGATTTTAGAAATGAGTGTCTCGTTCacctttcattttttga
aaacataaaAGATCGATGGTAAATAACCCTTGACATTAAAAGGGAAATTC
CAAAAAACGACAGCACACAATAGAAATAATACATAATCATAAATTGTTAT
AAGCACCGCGTCAAAAATAGCCTTCGGACGTTCTTAATTTCTCatgttct
ttactttttgagtttgaacattttgaagcctaaagatgttcttatttcac
aagttttgtgcaatttcctaaaagTTTTAGAGTTCACAAAGGCTTGATTA
AAATACTTTGCCCATCACATCCATGCCTTATGCTtgttcttaaataaaaa
aatacgtATGCTTATGCAGCAGGAATTTTCAAACATACACCTtgcttAAT
TTAATGACAGGTTGAAATACAGGAATAGAGGATATGTTGCTTTTTTATAA
TTCCTATTTAACACCCACTGCTTACGAATCCCCGACTCCCTAGCGTGATT
ATGACGCTAGTCTCGAATGCCCCGCGAATGCATCTCTCTGATCGAGAGTG
AACATTTGAGGGCCTCGTTAACGCTTTGAACCATTGAAAAGTGGCGCGTA
GCACAATATCGAATATATTTTTACACACAAGAAAAGCAAAcacaaaaatc
gaatgtttttcttctctCTGATCGGCTGATGAAAAATCGAGCTTCGCAGC
TTAGAGCACACGAAAGAATATTTTCTACTTTCGTCGCTaaaccaaaaaca
aataattttgagAGATTATCGCGTCGGCAAAAGCTTCAGGGATGACATCG
ACTTCTCCAAAGATATTacaactacacgcttttttattataagaatacac
tttataagaatgaccatgatgaaaatggccaaaaaattaagaataatgct
aagaatatcatcatcatggaattCTGCTACACAAGCTAAGAATTTTTAGA
GCGTTTCCAAtcataaattgtcaattaccctcaagtaaggctcactcctt
tcacaaaaatgccattttatgcttgaggcgTATGTACTAAAAGTTAAacc
tagtctgaattaggatcctaacctaagaatgcggtaagaatattttagga
tgattttcccaaaaaagttaagaatatcctagcctgggtatccagactca
aaattttagaaaaaaacactcttacctcaacatacaaagtttctaaaatt
atagagtctggtgcaactaaaaaag Run BLAST on NCBI transcript from alignment at sc0000067:226161..228895- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006485 ID=TCONS_00006485|Name=TCONS_00006485|organism=Clytia hemisphaerica|type=transcript|length=2735bp|location=Sequence derived from alignment at sc0000067:226161..228895- (Clytia hemisphaerica)
ACCTAATTTTGATTTAGATTGAAAAAGGTACAGATATACGTAACATGTCG
GCGGTCATATAGATAACACTAGACTGTAATGAAATACAAAGACATCAAAG
TGATTGCTCACGGCCTTACCTGCTATCTTGCTCCAACAACAGATGAAACA
GTGAGGGTACTCAGTATTCATGGTCTTCATTTCCGTCAATGGACAATTAT
GTGATCCATCGTTCAACACACAAGGTTGATGGCCTTGTTTTGTGTAAAAC
TCTGGTCTGCCATCTTTCCCAATCATACACCTTCCGTCTTTCCAAGGTCC
TGTCTGTTTCGTACTATGCTTATTAGAATTGTTTATGATTACACCAGACG
GTTTTGCTGCGACCAAACAAGTAAACAAGACAAAAATCAGGAAAAAAGTG
TTCACTATGGACTTATCCAAGGGCGCTCTTGTGTCGCAACCGCAGCCGAA
AGACATGATTATAATCTACAAATCCTCTTAATTTGTGATATAAGTTTCTT
GATTAAAGTAAAAATATTGTTAAAGAAAGATGCTTTCAAGCTCCTTTCCT
CTCGGCAGCGATTTTAGAAATGAGTGTCTCGTTCACCTTTCATTTTTTGA
AAACATAAAAGATCGATGGTAAATAACCCTTGACATTAAAAGGGAAATTC
CAAAAAACGACAGCACACAATAGAAATAATACATAATCATAAATTGTTAT
AAGCACCGCGTCAAAAATAGCCTTCGGACGTTCTTAATTTCTCATGTTCT
TTACTTTTTGAGTTTGAACATTTTGAAGCCTAAAGATGTTCTTATTTCAC
AAGTTTTGTGCAATTTCCTAAAAGTTTTAGAGTTCACAAAGGCTTGATTA
AAATACTTTGCCCATCACATCCATGCCTTATGCTTGTTCTTAAATAAAAA
AATACGTATGCTTATGCAGCAGGAATTTTCAAACATACACCTATCTTAAC
AGTGTAGACCTAAAGCTCTAAAACAGCATCTAATAACATGAAAACCAGAA
TATGATTCTTCAATGGGAATCAAAACTATAAAGTGCACTTACAAACATCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCGCCTTTGCGGGATTTTGGCTCAAGTGCTTGAGTGCAGCATAGGGTTCA
AAGTCCAAATATGCGTTTCCCGTAATTTTTGTATGAAGAGTTAGGTCTAT
ACTGCTTAATTTAATGACAGGTTGAAATACAGGAATAGAGGATATGTTGC
TTTTTTATAATTCCTATTTAACACCCACTGCTTACGAATCCCCGACTCCC
TAGCGTGATTATGACGCTAGTCTCGAATGCCCCGCGAATGCATCTCTCTG
ATCGAGAGTGAACATTTGAGGGCCTCGTTAACGCTTTGAACCATTGAAAA
GTGGCGCGTAGCACAATATCGAATATATTTTTACACACAAGAAAAGCAAA
CACAAAAATCGAATGTTTTTCTTCTCTCTGATCGGCTGATGAAAAATCGA
GCTTCGCAGCTTAGAGCACACGAAAGAATATTTTCTACTTTCGTCGCTAA
ACCAAAAACAAATAATTTTGAGAGATTATCGCGTCGGCAAAAGCTTCAGG
GATGACATCGACTTCTCCAAAGATATTACAACTACACGCTTTTTTATTAT
AAGAATACACTTTATAAGAATGACCATGATGAAAATGGCCAAAAAATTAA
GAATAATGCTAAGAATATCATCATCATGGAATTCTGCTACACAAGCTAAG
AATTTTTAGAGCGTTTCCAATCATAAATTGTCAATTACCCTCAAGTAAGG
CTCACTCCTTTCACAAAAATGCCATTTTATGCTTGAGGCGTATGTACTAA
AAGTTAAACCTAGTCTGAATTAGGATCCTAACCTAAGAATGCGGTAAGAA
TATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCTAGCCTGGGTA
TCCAGACTCAAAATTTTAGAAAAAAACACTCTTACCTCAACATACAAAGT
TTCTAAAATTATAGAGTCTGGTGCAACTAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006485-exon-sc0000067-1575043694:227954..228895 | TCONS_00006485-exon-sc0000067-1575043694:227954..228895 | Clytia hemisphaerica | exon |
| TCONS_00006485-exon-sc0000067-1575043694:226161..226993 | TCONS_00006485-exon-sc0000067-1575043694:226161..226993 | Clytia hemisphaerica | exon |
| TCONS_00006485-exon-sc0000067-1510915933:227954..228895 | TCONS_00006485-exon-sc0000067-1510915933:227954..228895 | Clytia hemisphaerica | exon |
| TCONS_00006485-exon-sc0000067-1510915933:226161..226993 | TCONS_00006485-exon-sc0000067-1510915933:226161..226993 | Clytia hemisphaerica | exon |
| TCONS_00006485-exon-sc0000067-1491911889:227954..228895 | TCONS_00006485-exon-sc0000067-1491911889:227954..228895 | Clytia hemisphaerica | exon |
| TCONS_00006485-exon-sc0000067-1491911889:226161..226993 | TCONS_00006485-exon-sc0000067-1491911889:226161..226993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:226161..228895 - |
Blast
The following BLAST results are available for this feature:
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