TCONS_00006483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006483
Unique NameTCONS_00006483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006483 ID=TCONS_00006483|Name=TCONS_00006483|organism=Clytia hemisphaerica|type=transcript|length=3183bp
GAAAGATGGCAGCatacaatcaaaacaaaaacaaatctcGAAATGGAATG
TGgcttttctgaaataaaaaaagcacAGCAGAAGGTCTGAAAACTGAAAC
AAAGACCTAATAATATCGCTTTATACTCAAGAAAATTCGGTGAGCAAGTG
ATGGATATTGAAGATACAAATGACAAAACTAGAAATACTTCATTGTTTGA
AACCGGTCGTGCTTCATGGTGGAAATCAAATCACAGGaAAACACCATGTC
CTGGAGATTACGAGACACATGATTGGCTCTACGAATTGGAAGCAAAACCA
ACAAAAATGACGTATGGCTTCAAATCAAGCGGACGTAAAACTCGAGCTGA
CAAAACACTACGTGGAGAAGTACTCATGCCTGGTCTCTACAACAATAAAG
ATTCATTCATTGATCTTCAAGAGAATAAGAAGAGTTCTTATGGCTTTAAA
AACACAAACCGTGAAAACAAGTCCGCTGTTTATATCGGAATTCAAGATAA
AGAGATGCTGAAAAGTGATCTGGGCCCAACCAAATACGCAAAGGACTTCG
AATTTGACAAAAGGAATCCCTCAACgtatgcTTCATTCAAATCTCAAAGT
GCAAGATTTCCCACAATTCATTTTAAACCTaaaacagGCCCACCACCGAC
ACAATATGAAGTCAAAGAAAAGAGAACCGTATCCATTTCATCCCCTTTTA
AATCGGGCACGCCTAGATTCAAGAGAGTACATGTCATGAAAACACCGGGG
CCTGGAGCGTACGCCAAGATGGTCCAATACCCGATGCCGAAGCATATCCA
CGATGTCGGGCGTTATCATGGGATATTCTTTCCGCCCAGCACAACCACCA
TCAAATGACGGAtgggaaaaattgaatgttgtaTATAAAGTTTGTATGTG
TGCAATGcaaaaatagggtcggtcgggcccgtggaacaacaaattaaatt
ggtctcgccttaccaagaaatatattttttgattttgtacattttaattt
tttatactaacgataatttattttaattgtagaattatttttctaaatgg
GTAACTAGAAAATACTAATATGAAACTCAGACAATTTTTACAGACTTTTT
TTAGTAGCATTCCTTTGAGAAGCTTTAAATTTTCATATCATTTTTATATT
AAAACTACCCTTACTACCCAGGACACCAATACGATTTTTCGCAATTCTTG
GCCATTTTCGGCAAAAGTTGATTTCTTAAAAGACCAATTCGCGAAAGCTT
TTacatgtacatgtttttttataagcatacaaaaatccaaaagctgACTC
GGGAATGCTTAGATCGAGagatttacaaagctgaaaaatgctttgaaata
tgcttatatcctaaactaaattttagagaaatttcaTAAATCCGTTAAAT
TCCAGTCAAAAAGAAACAAATTCTGAGTATGAAGGCTCAAGGTAATGTTA
TTTAGgatatgcttaaatttttacCATATATATGAGCCTAGTTATGCTTA
TAAGcgcaatgcttataaagaaaaaaacatgtattaccaaaaaaaataGC
AAATCATTTAGAAAAATAAGGTTGTAGTAGATTTTTACTGGGAGAAAATT
AGAGAAGATTAGAGAATTTTAAGTTATCAATAAATAATGGTTAATAGCCT
AATGATTTAATTAATTAAATTCGatcaataaattaaatttttataaaaat
tgggttataaaaacagaaaataaagtATAGGAAAAACAATATTTCTttaa
ttgaaatgtttttgtttagaaatactCTGCTCGATAAGGTCTACTGGTTA
TATTCCCATAACAAGTACTGTTTGTGTTCACTTGAAAATGCTGTGAAGGT
TGCATTCCTTCGTATGCGAGCGCTCGCTCATAAGCGGCCCGCTCGCTACT
ACAATAAGTCTCACATGAATTACGTTCGTTTATCTTCGATGGCAGATATG
GTGAAAAACCTGAAGGTGGAGCGATTGTTCGCGCAACGTTAGCGCTACGG
AACCGGTCGTTGTTCACCGAGGAATTAGTAATGTTGTCAGGTGATGCATG
TCCACTGCTAGTTGGGGATGACGAAGGCGTTGTGGGAAAAGACATGGCTG
AGAAATTGTGATGGGAGGGTGAATGGCTGGTTGGCTGATAATGTTTGTGT
TCCGTGTTGCAGATGGGCGGATGATGTAAGGGTGGATGACCATTCTGTTG
TTCAGAGATGGGTGGTGAGGATTGAAATCCAGTGAATTCTTGAGAGGATG
GCAATGCTTTATGATTTGCATCCAGTGAGCTGAGGTAGTTTTGCCACATG
GGATGAGAAGTGTGAGGTGAAGTGTTGCTATGATATTGCGGTAGTGTTTC
ATTAGCTGTTGACGATGTAATGTAGGGTGGAAAGCCATTCATTGGTTCGT
TGTAACATGACGTCATATAGCGTTgtgattcttgaatgtttgcccaGTGT
TGTGTGTTGGTGCGCATTTTCTTGCGGTTGGAGCGACGCTTTCGGTAATC
ACCACGCATGAAAGCATCGAAGTATGATGGATGGATTGTCCAATTACAAG
AACGACCATTCTCTGGCCGATTCAACTTGACAAAGCATTCATTGAGTGAG
AGTGTGTGTCGAACACAATTTCTCCACCCGTTGCCACGCTTTTTCAACAC
TTCGAAAGAGATGGTCATGAAAGTATAGATTTCGGACAAGGTGGCGCGTT
TGAAGGATGTCCGCATGATTGCTTGAGCGATCATTGCTGTATAAGAGCAA
CTGTTGTCTTTCGCGTTTGTTTCCACTTTAGTATCGTCTTTCTTGATGTT
GTTGTGGCGATTACCAGTGTTGACGACTGGTGGTGGTATTGGAGGTTGTA
GCGGCGCATTAGGTGGTATCAAGAATCCATTGTTTTCCATTATAAAGGTT
TTCAAGTTATCAATAATCACAAGCTATTTTATTTGTTAATTTCAAATTGC
CGTCTTTAGAAAACAATTCTCTCCTTCTAATCATACAAATGTTCAATGTT
CATACCACTCCACCGTAAACTGTAACTTTTGAATCTAATAAATTTGCGAT
TAATTCTAATAACTTTTCAATATTATTCAAAAactaatttaatttttgtt
caaTAAGCGGTAAATGAGCtaaaaagtttgttttctttAGCCAGTGTGTG
CATTGTCTGCAAGCTGGAAAGTTTATGGTGAAC
Run BLAST on NCBI

transcript from alignment at sc0000067:181833..193041-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006483 ID=TCONS_00006483|Name=TCONS_00006483|organism=Clytia hemisphaerica|type=transcript|length=11209bp|location=Sequence derived from alignment at sc0000067:181833..193041- (Clytia hemisphaerica)
GAAAGATGGCAGCATACAATCAAAACAAAAACAAATCTCGAAATGGAATG
TGGCTTTTCTGAAATAAAAAAAGCACAGCAGAAGGTCTGAAAACTGAAAC
AAAGACCTAATAATATCGCTTTATACTCAAGAAAATTCGGTGAGCAAGTG
ATGGATATTGAAGATACAAATGACAAAACTAGAAATGTGAGTAATGATAA
AATGTTCAATCCCTGATTTTTCTCAAATCCTTTCCAGCTCCAGGCAGCCA
GGGCGGGTTCAACGTTCAACGTGCTACCCTGCCCCTGCCGGTTTTTGTCC
GGTGCAGCCGGTGCAGGAGAAGAAAGGGGTACATCTCACTAGTCCGACGC
TTTCTAGTCCGACAACAATATCAATATGGTTGCAGTCTAGAGATATCTGT
ATGACAACCATTTTCTTTTGTCTTTTTTATGGATTTATTTTGCTTTTGCC
TGATAAAGACTGGATTTTGATCAGATAACAAATTCATTTTATATACTTCC
ACTTAACTGCTACTTGCACAGGGCGCTCATTGAAAGTGTTTATAGTTCTA
GAAATGAGCCACAAAGCATCCTGCATCTCAAAAAAAATAGAAATAGAGTC
ATTACCACAGGAAAAAATCTTTGATTCCCTAGGTTATGGAAATGTATATT
TCCAAATGTGGAAGTGGGGCGACGACTTGCACATTTATTTCAGCGCAGCT
ACTTACTTACTTACTTACTTTTTGAAGGCTTCTTTGTTCGTCTCAACAGC
TGCGCGAGGTGTTTGGCTATTATATATTGCGCAGCACAAGTATTCCACGT
ATGGTATGACAGGGCTCACACAGCTCCTCAAATCTCCTCAATTCTCCTTA
AATTTCAAATGTCTCCTCAGCAATTCTCCTCAAATCTCCTACTTTTTCTC
AAATTTTTCCAATATTTTCTTCAAAACTCCTCAATTAAATTTGACCAAAT
AAAAAAAACATTCAAGGTAGTACTGCTGGCCTTTGAAAGATGTTTCGAAA
GTTAATTTTCAAGAATAACATGCAAAATCTCTTGCTCGCTTCGCTCGCAC
ATTTCTTTACTCTAATATCATGTTTCCCTTTACTCATTCTTTTTCAAAAC
TCGAAATCAGTGGCGTTCTGGCAGGGACAGAGGCCACGACCACCCAATAG
AGCTTTTTAAAGGGGGCGCTAAAGAGCAAGGGGCGCTGAATGAGGTTTTT
AAACGCCCCAATCTTAAAAATTATACTTTATGCATGGCTCCCTTAATTGC
CGCACAGGATCAATTTTACTAAAATCATTTTAAGTTACTTTCAATTTTTC
TTGCTCGCTTCCCTCGCAATCTAGTTATTTGGTAATTTCTTTGAAATCTT
GCTAATTTACAAGTTTTTTTGTGTAAAATGTAGCTTTATTGAATGAAAAC
CTAACTGCGCCCCAAGACCAATTTGCTAACAACAATATTATTTAAAACAT
AAAAACTCAATTTTTTTGCTCCCTTCTTTAATTTTGATTTAAATTTAAAT
TTTAATCTTTTCAGGTCTTTGTAGTTCTACACTTAGAGCCACTGCTCCAC
TCTAAGGACAATTACCTAGGACCCCTCCCCCAAGAAGGAGACTTTGGTAA
ACCTTTCCTTTGTTTAATTGGTAAAAAGCCCATTTTCACAATAAAAGGAG
ACAATCTCAAAAGATTTTTGTGCATCTTTCAGGAAGAGCCACCACCCCTA
CTGCATGTTTGGATGATGTCGATGTAAAACATTACNACTTACTTACTTAC
TTACTTTTTGAAGGCTTCTTTGTTCGTCTCAACAGCTGCGCGAGGTGTTT
GGCTATTATATATTGCGCAGCACAAGTATTCCACGTATGGTATGACAGGG
CTCACACAGCTCCTCAAATCTCCTCAATTCTCCTTAAATTTCAAATGTCT
CCTCAGCAATTCTCCTCAAATCTCCTACTTTTTCTCAAATTTTTCCAATA
TTTTCTTCAAAACTCCTCAATTAAATTTGACCAAATAAAAAAAACATTCA
AGGTAGTACTGCTGGCCTTTGAAAGATGTTTCGAAAGTTAATTTTCAAGA
ATAACATGCAAAATCTCTTGCTCGCTTCGCTCGAACATTTCTTTACTCTA
ATATCATGTTTCCCTTTACTCATTCTTTTTCAAAACTCGAAATCAGTGGC
GTTCTGGCAGGAACAGAGGCCACGACCACCCAACAGAGCTTTTTAAAGGG
GGCGCTGCTAAAGAGCAAGGGGCACTAAAGAAGGTTTTTAAAACGCCCCA
ATCTTAAAAATTATACTTTATGCATGGCTTCCGGGCTCCCACAGCTCCTC
AAATCTCCTCAATTCTCCTTAAATTTCAAAAGTGCTCCTCAAATCTCCTC
AAATCTCCTACTTTTTCTCGAATTTCTCCAATATTTTCTTCAAATCTCCT
CAATTAAATTTGACCAAATAAAAAAAACATTCAAGGTAGTACTGCTGGCC
TTTGAAAGATGTTTCGAAAGTTGATTTTCAAGAATAACATGCAAAATCTC
TTGCTCGCTTCGCTCGCACATTTCTTTACTCTAATATCATGTTTCCATTT
ACTCATTNATATGAAAAACTCCTCAAATTGTTACAGAAATCTCCTCAAAA
AAGCGAAAAATCCACCTTAATTCTCCTCAATTCTCCTTAGATTTGAAATT
TGGAAAGCTGTGGGAACCCTGTATGAGTTATCTTGTATGTCTAAAACAGC
CTCTTCAGCCAGTTTCATCAATATGCCAAGAACAATTTGTTCAACCACCT
TCACTTCAAGATAGGCCACCATAGAATGAGCTTCCCTTTATAGGATGAAC
CATATTCATGTGGCTTTCAGCCTTGCACTCCATTGCAGATCGCAGAGGCT
AATCAATTTTAATGACTTTTTTGACTAATGGCCAAGTTAAAAAATTTTAA
TTTTTTTATATTTGAGTATTAAAAAGGCATGCATTCAAATAATAAAGGTT
TAAAATTTTTCTCTGGGCTAGTTAGTAGAATATCTCAAATAGGCTCTGTG
ATGGAGTGTACACAAGAATATGGTTCATCCTATATAAGGAAGTTCATTCT
GTGATGGCCTCTCTTAGAGTGAGGATGCGGCTGAACAAAATGTTTTGGTC
ATATTGATGAAACTGTCAGCCTTTCGCAGCGGTGAAACATATTGTGCAGC
ACAACCTTTTGCATGATTACAATGTTTTCTCTGATGAGATTTTGATATAA
CGTCACATTCATTCTCAGAAACTCTGCATGAGCTTCAGTTGCTGTTACAT
CAAAGGAGGGGAACAAAGATTTGTGCTGCCATAGCTGTCAACTTCACCTC
ACAAAAATGCGGGAGAACTCCAAGTCGGAAAAATTTTCCCTATTACCAGT
TTTTCTAAATTGGAAAATTGAGAAATCTGGGGAATTTTCCCGCAAAATCT
AATTTTATCGGAAATTTTTTCCGGAAATAAAGGAAATTTTGCCATTCGAT
TCTGAATTTTTTTTCAGAAATTTGGAAAATTTTTGGAAATGCGGGAGATG
CGGGAGGAAATACTGAAAATGCGGGAGATTTGGCTGAATTTTTTTCGTGC
GGGAGAAAATGTTGGCATGCAGGAGTCTGCATGATATGTTTCGAAAGGTT
GCACAGTGGCAAAGTAATTGTGCAAATCACTGGCCCTTTGAAATGTGGAA
ATCTGGATTTTCCCTAACCAACCCCTAGCTAGGGAAGGTGCTTTTCTCAA
ACTGACCCCAATGAAACGCCATAGGGTTAGAAATATTCACTAATTAAATC
CTTCATTTGATAAATTATGGAACGCTGGTAAAAACTATAAATGCAATTAT
TCTGTGAGCATTGGCTTGATAGCTCTCATTCATTCTGACATGTACTTGCA
CTACTTTTGTCACAACAGTCGAGCTGCAGTAGAGAGCCAACTTATTGTTG
TGGGATGACTAATAATGCCGACTTTTATTGAATGACATGCTATGAGCAGC
TAATCAAAACAACATTCTGAATAGAAAAATGTTTTTTGAAAAGTTGTCTC
AGATAAGAGATTATAGTTGAACTAGGGAAGAAAATGAGAAAACTCTTTAT
ATATATTTCTCTTTCTCCATTAGACTTCATTGTTTGAAACCGGTCGTGCT
TCATGGTGGAAATCAAATCACAGGGTAAGGTTCTTCTTTTCACAAAAATT
TGTGTTATCGCCAAAATTAAAAATTTTACTGCATTACCAAAATAAGATCT
TGCCAAAATTAACTTTTTTTGATGTTTTTGAAATTTTATCTACTTTACTA
TATGTCAAAAATATGTAATTTTTAAACAAAAAAGACTGATTATTCTGCTT
TTGCCAAAATCAGTTTTCGCAAAAATTAAAAAACGTTACTCTCGCCAATA
TTAAAAATAATGCTACTTGCAAATTTAAGTTCTTGCTAAATTTATTTTCT
TACAATTTTTGCCCCTTGCCAAAAGTTAGTTCCCTTAAGGCCTAAATTTA
AAATAACTAATTAGATTTAGAACGTCATGGTTCCTTAGGAATTTTGCTGC
CCATAAAATGTTACCAACTTTATCATTAAGAGCCTTCTTAAATCCTTAGA
TTATCTAAGTGGCCTAGAAACAATATTCAATATATATAAAATTTCCATGG
TGCCGAGTATTTTGATAGGGTTTAAACATTATTGTACCCTCATTTTGAAA
TACCAAAGTTATCCAAGAATACCTGTTATAGACAAAAGGCTTGTGAGTTT
AATAATTAGCTACTAGGCTGATATTTGCGTGTAATTAAAAGATTGCTAGA
GCATAAGTTGTTTTCGGTGGCATTTTTATCGAATTTAAATACTTTCAATG
TCGGTCAAATCCTGTGGTTCAATTTTCCCGTGGTAAATTTCTCCGTTGGC
GAATTTCTTGTCATGCTTGAATCTGTAGTGAAGGCGAGGTCAACCAGGGC
CAACTAGTGAATCAAATCTGTGTGTGCGCAAATTTGAAATAGTTTCAATA
GTTTTCCTTTAATTTAATCGTAAAAGGGGTTACGCACCTCCGATTTATTT
TTGATTTTCTAACTCGGGAAATTGTGCTTCCTTTAACTATCCGAGTTAAT
TTTCTTTTTAATTAGAAAACACCATGTCCTGGAGATTACGAGACACATGA
TTGGCTCTACGAATTGGAAGCAAAACCAACAAAAATGACGTATGGCTTCA
AATCAAGCGGACGTAAAACTCGAGCTGACAAAACACTACGTGGAGAAGTA
CTCATGCCTGGTCTCTACAACAATAAAGATTCATTCATTGATCTTCAAGA
GAATAAGAAGAGTTCTTATGGCTTTAAAAACACAAACCGTGAAAACAAGT
CCGCTGTTTATATCGGAATTCAAGATAAAGAGATGCTGAAAAGTGATCTG
GGCCCAACCAAATACGCAAAGGACTTCGAATTTGACAAAAGGAATCCCTC
AACGTAATTATGATCTTATTTTTAGAGACTTCTCCTTAAGTATGGACGAA
AAGGAAAAATATGAAAAAAGAAATTTCACGTCTTAAATTCAACACATTTT
TAAAAGTCTTCGCTGATTCGTTTTGGAAACAGTAGTTTTGCCAGAAAACC
GGGTTTTAGGCCTCCAGAGCCGCCTGGGCTTACGCTGTAAGCTTACAGCG
CTGTACTGGAGCCTTAGTTAAGCTTATTCTGAGCTCCATACATGGCTGAG
CTGGTTTCCAATGGTCCTAAACCTCGTGGGACAAACCCTTGCAATAGATT
AGACCCGCATTGAAGTCCAGCGAAAGGGGCAGAACCGACAAATTATATAG
TCGATTTTCCGTCAGAGAGATCTTTTAAGGTGCATTAAAGAAAGGCATAG
CAAGATGCCTTACCTTCCTCTAGCAACTGCTTACACATTTTCCTTACAAT
TTCAAATCATTTTTTTTTTCAGGTATGCTTCATTCAAATCTCAAAGTGCA
AGATTTCCCACAATTCATTTTAAACCTGTATGTAGCCTGTTTGGAAAAAT
TTGAAATACCACCAATGATTTTTAAGTGCTCTAAGTTACTTCTGGAATGT
AGAGTTTTAACGTCAAAAAAAAACGGGAAAAAACCCAAAGTTATCAATAT
ATTATGTACCATTGTACTTTTAAAAGGTCTGGAAAAAAGAATCAATATCT
GATTCTCAACTAGAAATCAACAGTTCTTTAATATTTCATTTTTTAGAAAA
CAGGCCCACCACCGACACAATATGAAGTCAAAGAAAAGAGAACCGTATCC
ATTTCATCCCCTTTTAAATCGGGCACGCCTAGATTCAAGAGAGTACATGT
CATGGTATGTTTGGTTAACATTCTAATGGCTTTGGTACTTTAGGGGAAGA
ACCTTTCCCTTTCACCATTCTGGCAAATTTAATTAATTAATTTTGCAATA
AATTCTGAATAGGTGCCAAAAGTTTTTCTTTTCTTGAAATTTACTCTTTG
CTATTAAAAAACTTTCTATTTAAAAGATAAGTTTTCTGTTAGGCTGCTAG
ATTAAAAAAAAAAGATTTTTAGGAAGCCCCCCCCCCAGCGGACCCTCATT
CACGCAATCTCTTTTTGCAAATTCACTCCTTCACGCAGCTTTCTTAAAAT
TTTCACGCATTCACGCGAGTTAAAAAGCCTATATTCACGAATTCACACGA
ACTGCTGGGAGCCCCTTTTAGCCCTCTGTTTAACAAAAAAATAGTGAGAA
TTTGGGATAAAATCTCGTCGTTCTGGCGCAAAAATATTTTTCCGCGAAAT
ACTTTGAAAGGATCATTTCCATCAAATGAAAAATATCAACCATTGTCGTT
TTTGTTTCTTTCAACCCCAATAAGTATCAGACGTTGAGAATATTTCAACC
TCTGAAGACCAATAATAGAAATTTTATCGCGCATGGGTCAATCAACTCTT
GTCTCCCGAATAGACGTCCCTCCCCCGCTAATTGTTAAATGAAAAAAAAA
TCCATCCCCCCCGCTCTTATTAAGACCCCCCCCGCTAATTAAATTCGAAT
AATTTAATATTTTATTGCAGTGTAGATAGACCTTAAACTTGTTAAAATTT
TCCTTTTTGTTAGTATTGGTTCTTACTTTACGTGTTCATTTGTTAAAGTT
TCTTTTTTTGTTGTTGAAGTTGATACCAGTTAAAAAAAATTCTGTCTTGG
AATTACCCCCCCCCCTCNGTGAGAATTTGGGATAAAATCTCGTCGTTCTG
GCGCATAAATATTTCTCCGCGAAATACTTTGAAAGGACCATTTCCATCAA
ATGAAAAATATCAACCATTGTCGTTTTTGTTTCTTTCAACCCCAATAAGT
ATCAGAGGTTGAGAATATTTCAACCTCTGAAGACCAATAATAGAAATTTT
ATCGCGCATGTGACAATCTAATCACTGTAGATAAAATCAAAGATGAAGAG
CAAATATTACCATATTAATGTCTAGCAGACTGTATCAGTATGCAGTTTGC
TATTTACGAATTACCCAGAAACCTCCAAGTGTGATTGAAATGAGTTTCTT
TCAAAATAAATCTTTTACGTGATCCCCAAATGTATAACAGTAATTACTAA
ACTTTTAATCATGGAAATGTCACTTTAATTGAATCGAAATAATAGACAGA
CTTTATGCTATGATTCTCTATCTATGACTCTGACTTTAAGTTGTGTTTTC
AACGACGGGAATAAAAACATCAACTTTGAACTTCATCCTAGATCTTGGAT
GGTCGTCATGGTTACTTTTCTCTGCGTTGATTGCGCGCTGAATAGAATCT
GGATTGGTCGGTACAGCGTCGATATGTGCTTTGACCTGTGCTTTTCACAG
TACCAATGAGCAGATTTTGACTACAGCTTTTCTACACTGTGAGCTATCCC
TTTTTTGTTTAGAAAACACCGGGGCCTGGAGCGTACGCCAAGATGGTCCA
ATACCCGATGCCGAAGCATATCCACGATGTCGGGCGTTATCATGGGATAT
TCTTTCCGCCCAGCACAACCACCATCAAATGACGGATGGGAAAAATTGAA
TGTTGTATATAAAGTTTGTATGTGTGCAATGGTAGGTTTAGAATCTTACG
TTTTTGAAAATGGAGATATAAGAAACGCCCCTTCCGTTTATTAGAAAATG
ATGCGTGTCTCGAATAAATGCACAATATATGCTTAGCAAAATGTATGTAT
ATGTTTTTATTGAAAAATGAAAGATTTTATAGGAGGGGGTTTCTAAAAAT
CATTTGGCACTCTTAAGGGGGGGGGTCCTAAAACTGGAGTGTTGCACCTC
ACTTATAATATTTCTCAAAAAAGAAAAAACACACAAAAATCATAGAAACA
ATAGAAATATAGTTAAAATCGTGAAACTCAGGAAGTTTGTGGCTTATGTA
TAAACAAGGCAGGGATTTTATAAGGGGGTGGTTAAGATTTTCTAAGAGAG
GGGTGGAAAAATTTTCTGGTTTGGTTAAACGAGGGCGGTTCGAGAATTTT
TGGACATGCTCCATTTCTTTAGATGACCTCCCCTCCCCCCGATTCCCGGG
CCATTTTATAGATGGGCTGTTATCAGGCTTAATCAAGTAGGTCCCCAAAG
TATAGAAAGATTTTCAAAAGTATATTTTTCAGGTTAAATTATGGGAGAAT
TTTAAAGCAAAGAGGGTAATTATTTTGAAAGCGAGAGGATTATTATTTAA
TTAGGCGAGACCAATTTAATTTATTGTTCTCCGGGCAGATCGTTGGCAAA
ATATGAGTCGGTCGGTCGGTAAAATAAGAATAAATTTTTCATTTATCAGG
GGTGGTAAAGTACCAAGAAAATGTTTTCCAAAAAATATCTGGATCAAAAA
TTCACTTTTTTTATCTTCGATGAAGATCATAATAAAGTCTTAGTGTATGG
AATGGTTTGATTTTCTAAATTTTTCAATTTCTTGAATTAATTTTCAGCTC
TATTCAAATTTAATTCTTACAAATAACTAGTGCGTAAAATATATTGTAGT
GGAAATTCAATATTATTATTTTTTTGATTTTAGCAAAAATAGGGTCGGTC
GGGCCCGTGGAACAACAAATTAAATTGGTCTCGCCTTACCAAGAAATATA
TTTTTTGATTTTGTACATTTTAATTTTTTATACTAACGATAATTTATTTT
AATTGTAGAATTATTTTTCTAAATGGGTAACTAGAAAATACTAATATGAA
ACTCAGACAATTTTTACAGACTTTTTTTAGTAGCATTCCTTTGAGAAGCT
TTAAATTTTCATATCATTTTTATATTAAAACTACCCTTACTACCCAGGAC
ACCAATACGATTTTTCGCAATTCTTGGCCATTTTCGGCAAAAGTTGATTT
CTTAAAAGACCAATTCGCGAAAGCTTTTACATGTACATGTTTTTTTATAA
GCATACAAAAATCCAAAAGCTGACTCGGGAATGCTTAGATCGAGAGATTT
ACAAAGCTGAAAAATGCTTTGAAATATGCTTATATCCTAAACTAAATTTT
AGAGAAATTTCATAAATCCGTTAAATTCCAGTCAAAAAGAAACAAATTCT
GAGTATGAAGGCTCAAGGTAATGTTATTTAGGATATGCTTAAATTTTTAC
CATATATATGAGCCTAGTTATGCTTATAAGCGCAATGCTTATAAAGAAAA
AAACATGTATTACCAAAAAAAATAGCAAATCATTTAGAAAAATAAGGTTG
TAGTAGATTTTTACTGGGAGAAAATTAGAGAAGATTAGAGAATTTTAAGT
TATCAATAAATAATGGTTAATAGCCTAATGATTTAATTAATTAAATTCGA
TCAATAAATTAAATTTTTATAAAAATTGGGTTATAAAAACAGAAAATAAA
GTATAGGAAAAACAATATTTCTTTAATTGAAATGTTTTTGTTTAGAAATA
CTCTGCTCGATAAGGTCTACTGGTTATATTCCCATAACAAGTACTGTTTG
TGTTCACTTGAAAATGCTGTGAAGGTTGCATTCCTTCGTATGCGAGCGCT
CGCTCATAAGCGGCCCGCTCGCTACTACAATAAGTCTCACATGAATTACG
TTCGTTTATCTTCGATGGCAGATATGGTGAAAAACCTGAAGGTGGAGCGA
TTGTTCGCGCAACGTTAGCGCTACGGAACCGGTCGTTGTTCACCGAGGAA
TTAGTAATGTTGTCAGGTGATGCATGTCCACTGCTAGTTGGGGATGACGA
AGGCGTTGTGGGAAAAGACATGGCTGAGAAATTGTGATGGGAGGGTGAAT
GGCTGGTTGGCTGATAATGTTTGTGTTCCGTGTTGCAGATGGGCGGATGA
TGTAAGGGTGGATGACCATTCTGTTGTTCAGAGATGGGTGGTGAGGATTG
AAATCCAGTGAATTCTTGAGAGGATGGCAATGCTTTATGATTTGCATCCA
GTGAGCTGAGGTAGTTTTGCCACATGGGATGAGAAGTGTGAGGTGAAGTG
TTGCTATGATATTGCGGTAGTGTTTCATTAGCTGTTGACGATGTAATGTA
GGGTGGAAAGCCATTCATTGGTTCGTTGTAACATGACGTCATATAGCGTT
GTGATTCTTGAATGTTTGCCCAGTGTTGTGTGTTGGTGCGCATTTTCTTG
CGGTTGGAGCGACGCTTTCGGTAATCACCACGCATGAAAGCATCGAAGTA
TGATGGATGGATTGTCCAATTACAAGAACGACCATTCTCTGGCCGATTCA
ACTTGACAAAGCATTCATTGAGTGAGAGTGTGTGTCGAACACAATTTCTC
CACCCGTTGCCACGCTTTTTCAACACTTCGAAAGAGATGGTCATGAAAGT
ATAGATTTCGGACAAGGTGGCGCGTTTGAAGGATGTCCGCATGATTGCTT
GAGCGATCATTGCTGTATAAGAGCAACTGTTGTCTTTCGCGTTTGTTTCC
ACTTTAGTATCGTCTTTCTTGATGTTGTTGTGGCGATTACCAGTGTTGAC
GACTGGTGGTGGTATTGGAGGTTGTAGCGGCGCATTAGGTGGTATCAAGA
ATCCATTGTTTTCCATTATAAAGGTTTTCAAGTTATCAATAATCACAAGC
TATTTTATTTGTTAATTTCAAATTGCCGTCTTTAGAAAACAATTCTCTCC
TTCTAATCATACAAATGTTCAATGTTCATACCACTCCACCGTAAACTGTA
ACTTTTGAATCTAATAAATTTGCGATTAATTCTAATAACTTTTCAATATT
ATTCAAAAACTAATTTAATTTTTGTTCAATAAGCGGTAAATGAGCTAAAA
AGTTTGTTTTCTTTAGCCAGTGTGTGCATTGTCTGCAAGCTGGAAAGTTT
ATGGTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003681XLOC_003681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006483-exon-sc0000067-1575043694:192856..193041TCONS_00006483-exon-sc0000067-1575043694:192856..193041Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1575043694:188918..188968TCONS_00006483-exon-sc0000067-1575043694:188918..188968Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1575043694:187639..187976TCONS_00006483-exon-sc0000067-1575043694:187639..187976Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1575043694:187115..187169TCONS_00006483-exon-sc0000067-1575043694:187115..187169Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1575043694:186788..186895TCONS_00006483-exon-sc0000067-1575043694:186788..186895Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1575043694:185061..185229TCONS_00006483-exon-sc0000067-1575043694:185061..185229Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1575043694:181833..184108TCONS_00006483-exon-sc0000067-1575043694:181833..184108Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:192856..193041TCONS_00006483-exon-sc0000067-1510915933:192856..193041Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:188918..188968TCONS_00006483-exon-sc0000067-1510915933:188918..188968Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:187639..187976TCONS_00006483-exon-sc0000067-1510915933:187639..187976Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:187115..187169TCONS_00006483-exon-sc0000067-1510915933:187115..187169Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:186788..186895TCONS_00006483-exon-sc0000067-1510915933:186788..186895Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:185061..185229TCONS_00006483-exon-sc0000067-1510915933:185061..185229Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1510915933:181833..184108TCONS_00006483-exon-sc0000067-1510915933:181833..184108Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:192856..193041TCONS_00006483-exon-sc0000067-1491911889:192856..193041Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:188918..188968TCONS_00006483-exon-sc0000067-1491911889:188918..188968Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:187639..187976TCONS_00006483-exon-sc0000067-1491911889:187639..187976Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:187115..187169TCONS_00006483-exon-sc0000067-1491911889:187115..187169Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:186788..186895TCONS_00006483-exon-sc0000067-1491911889:186788..186895Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:185061..185229TCONS_00006483-exon-sc0000067-1491911889:185061..185229Clytia hemisphaericaexon
TCONS_00006483-exon-sc0000067-1491911889:181833..184108TCONS_00006483-exon-sc0000067-1491911889:181833..184108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:181833..193041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48647	2.58038	0.367761	0.0970308	38.2257	30.5823	16.1261	15.9901	6.23547	8.40863	8.02282	6.38307	2.54216	1.83365	2.15577	3.35145	1.78282	1.70188	2.1753	1.46856	1.13932	0.697441	4.21045	4.50008	1.88001	2.08977	1.44224	1.42536	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00006483 vs. Swiss-Prot (Human)
Match: STPG4 (Protein STPG4 OS=Homo sapiens GN=STPG4 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.968e-22
Identity = 74/218 (33.94%), Postives = 100/218 (45.87%), Query Frame = 1 
Query:  181 RNTSLFETGRASWWKSNHRKTPCPGDYETHDWLYELEAKPTKMTYGFKSSGRKTRADKTLRGEVLMPGLYNNKDSFIDLQENKKSSYGFKNTNRENKSAVYIGIQDKEMLKSDLGPTKYAKDFEFDKRNPSTYASFKSQSARFPTIHFKPKTGPPPTQYEVKEKRTVSISSPFKSGTPRFKRVHVMKTPGPGAYAKMVQYP-MPKHIHDVGRYHGIFF 831
            + TS FE  R  WW+     TP PG Y    ++ E    P   TY FK+ GRK          VL          F+DL + + ++Y FK+  R + S +     DK+     L P +Y        +  S    F+S   RFPT +F P  GP P  Y VK   T S++S F+S  PRF      KTPGPGAY  + Q+P     I  +G+ H +FF
Sbjct:   31 QKTSSFE--REGWWRIALTDTPIPGTYHLKTFIEESLLNPVIATYNFKNEGRKKPPLVQRNNPVLNDLPQYMPPDFLDLLKKQVATYSFKDKPRPSPSTLV----DKDQ-SLQLSPGQYNVLPAPVPKYASRSCVFRSTVQRFPTTYFIPHEGPGPGHYNVKMPPTSSVTSCFQSRVPRF-LPSCSKTPGPGAYTTLRQFPKQSPTIAKMGQEHSLFF 240
The following BLAST results are available for this feature:
BLAST of TCONS_00006483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STPG45.968e-2233.94Protein STPG4 OS=Homo sapiens GN=STPG4 PE=2 SV=2[more]
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