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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006481 ID=TCONS_00006481|Name=TCONS_00006481|organism=Clytia hemisphaerica|type=transcript|length=492bp
CGGTATATATATAACATCTTGTCTGAGCAAGTGTGAATAGTTATGGGCAA
ACCATACAAACCAACTTTTGATAAAAGTGGCATCCCATTAATGCTTCACT
GGTCACCTCAAGATGTTGGCAACTGGGTCAAGAACACATTAAACTATCCC
CAATATGAAGATTGCTTTATCAGCAATTTTGTCGGTGGCCAAAAGCTGAT
TTGGATTGATGCTGATAATTTGGTTAAATTGGGAGTGACTGACTTCAAAC
ATATTAAGATCATCACTCAAAGTATACGAGAGCTTCTTGGTATCGAAGAT
CCTCAATGGAGCCGATCCATCTCATTGCCACCGCGCGAGACGCTTTCGCA
TTTCTTGGAACGGAAATCAGTTCGCGGTGAGGAGAGTAAAAATTTAACGT
TCGAAAAACATGTGcgtcaattaaaaaaattcatgctTCATGACAGTTGA
TCGATTCTCTGACAATAAAGAATGAAATAAAGGACAAggaca Run BLAST on NCBI transcript from alignment at sc0000067:107513..114534- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006481 ID=TCONS_00006481|Name=TCONS_00006481|organism=Clytia hemisphaerica|type=transcript|length=7022bp|location=Sequence derived from alignment at sc0000067:107513..114534- (Clytia hemisphaerica)
CGGTATATATATAACATCTTGTCTGAGCAAGTGTGAATAGTTATGGGCAA
ACCATACAAACCAACTTTTGATAAAAGTGGCATCCCATTAATGCTTCACT
GGTCACCTCAAGATGTTGGCAACTGGGTCAAGAACACATTAAACTATCCC
CAATATGAAGATTGCTTTATCAGCAATTTTGTCGGTGGCCAAAAGCTGAT
TTGGATTGATGCTGATAATTTGGTTAAATTGGGAGTGACTGACTTCAAAC
ATATTAAGGTAAGACGATTTTTTGCTTATGGAAACTTCTTAGTAAAATTG
AGAAACTTCATTTCATAATAACTAGCATTTAACCCATAGATTTATAAAGC
CCGTAGGGCTAGATGTCAAACTTTAACTGAAAAATGTGCCGTGTTTAGGT
AGGAAATCCTACCTAGATCGCGTCTGGTCGCGTGACAATACAATAGAATT
TCAGCGCTTGACCAATCAGAAGGTTCGCGGGTTTTCGAAAACAACAACAA
CAATATTTTTTCCGATATTCACTTTTTTTACCTGCGATGTCTTAAAGCAC
GACATCTAGCCCATCGGGCTTTATAAATTTATGATTTTACCACCCCCTCC
ACTCTAAAGGCTCTAAAGGTGACAAAGAAAATTGTGAAGCATAAAGGTTC
TGAAAAGAAGAAAACAATTAATTCTATTAAATTCAACTTACCTTGATAAG
GCTCTTCGTTCAAACTCGCTAAGCTTGGACTTGAAATGTTCCTCATCTTC
TCTTTATAATTTGGTATTTCTATTTCAAATATGATTTTCATTCTATTAAT
ATTTATTTAGCCTTCTATCTTTGAACTTTTGAAATATAAAACGTGCTTAG
GGTGCTGTGCTTGGATTAGTGTTTCTATGGAAACAACAATATTCAAATTT
CTCGATCAATCAAAAGTTACATGCGACGGTTAAAAAGCTTGTTCAGCTAT
TTTTTGTAAAACAATGTAGTGACTTTCGGAAGTTATAGTTACAAAGTAAA
GGTTGCAGTATTTTGACAACTTCTTTGTTAGCTTTTTTCATTCCGAATTC
TGTAACCGTTCTAAAATTTAAACCAACGAGTAGAAGCCCGAAGAGCTAGC
AGCGAATCTCTAACCTTTCTCAGGAAGGAAAAGTGAAGCCTTAAAATATG
CGCCCCGCATTTTTGATGACGGACTGAGTCGAGCGATTTCGTTGTTTTCG
AATGGTACATTTTTAAAAATCTTGCGCAGTCCGCGTGGATTTTGTGTGAA
ATCCACGCGTACTGCCCTAGGCTGTGCAACTTTGGTAGGACTTAATGGCT
TCAAATCCTACCAAGGTAAAGTATAAAAAAAAATTTCCGAGGTTTTTTTT
TGCAAATTTTAGCCATTTTCCAGGGGGTATCCTCTCATTTCCAAAAATAT
TATTTTGACTTAAAAAGATTCTTCCACCCCCCTGTATGGATTTTTAATGG
AATAGCCCATTTCATTAATTTAAACCCTCTGCGGTTCGCGTCTAGAGAGG
GGGCTCGACAAGACTCGTTTTCATATTAGAACAGATTGGCACAAGAGATG
AGAAATTGTAAAAAAGCAATAAAATGAATCAGTGTGCTGTAATAAGGAAC
AGAGACCTTGGAAAAGAGATCTTATCAATTCTGCTTTAGCTGACGAAAAA
ACTTTTTTTTAAGGAGAATTTCAGATAGATTTTCAGAGCAATCTATTATA
GTCGTTTGTAAAAAAAACAACAGTAATTATAATTAATTCCGAAATAATTA
TGTGTCAATTAGCTGAGACAAACAATTCAAAAAGATGTTTTGATCCGTCT
GTGATGGAATGTAATATGACATTTATTCAACTTGCTCTCTTTGTCATGAT
CACGTCAATCTTGTCAATCTTAGAATTTTTGAAATCTTATCAGTTTGTTG
TACACTGTAGTATCAAAATGGTAGACACGAAAACAGGCTTGTTTAAGATG
AGAGAGATTTTGACTTTGATTTTGCTGCAAATGATTAGCTTTGCGAATGC
ATTGTTGGTGTTTATAGCTGAACAATTTGACAGAAAGCGAAAAGTAAAAA
ACAGTGCAAAGGTTTCCAAAGTGCTTTGGTGCACGCGCGTTGAACCAGTG
TACACTGAATGTGATTTTGGAAGTGATGATTTTGTTTCGGTCTTCGAACA
ATTTGCAGACCCGAAAATTATCCTGAACGAGAGTGTTACGTTGTATGCTT
TGACTGAAGATGAGGCTCTTTTTGTTGACACTGGTGACGTCACAATGATG
CAAGCTCAACCTGGGTGGCTCTATTTATTCCAATGGGAATCAGCCAGGAA
ACTCATTTCCATGCCTTTAGATGTCTTCCTCAAAATGTCCGAACAAATCG
ATTTCCCGGACTGTCCGGTCATCAATATAGCGAACCATACCAGATGCGGA
GGAACCTTAATGAGCAGAGTATTCCAATCCATCCCAAGTGCTTTGGTCCT
TACTGAACCTCAAGCTTTGAGTTGTGTTGCTTTCTTCTCAGCACACAAAA
CATTCCCTCCAGATATGATTCGGTGTTTATACGTCAGCACTCTGAAATGT
TTGTTTAAACATGCGACTTTACAGAACCTCGATATCGTGTGCTTGAAATC
GTGGCTGCCAGAGNTCACCTGACATGATTCGGTGTTTATACGTCAGCACT
CTGAAATGTTTGTTTAAACATGCGACTTTACAGAACCTCGATATTGTGTG
CTTGAAATCGTGGCTGCCAGAGGTGTTTATTTTAGACTTGATGTTTGAAG
CTACTCCTTTAATCAAACATATCTATCTTTACCGTAACCCTTTAACGTTC
GTCAAATCATGGGAGAAACTGTTTGCTGTCAACCAGTTCCCTATGATGCC
AGTCCACGTCGTCAAATCGAGATGTTATTTGTACCCAGTTCTTTCTAAGT
CTTCTTTATTCACTGATGAAAATATCGGAAGAATGTCCTGGTATGAGAAA
TGGGCATTACATTGGATTCGATGTTACGCTGGCTTCGTGGATGTTCATAA
GAAGAACCACTCTATTTCCACGGTCAGATTCGAAGATTTCATCTCAGATC
CCGACCAAGTGATGTCTTTGATTTTCAAATATGTTGGAATTAACGAATCG
CTTTTGCCAGACGCTAAATCGGTTTTGAAATCCGATTCTCAGAAAGGCAC
TATTTACACGTCGAGATCTGGTGCGAAATTGAGGGCTAATTTGCTTACGC
CCATCACCAAGGAATTGAAAGAGAAAGTTGACATTTTGTGTGATTTGTTT
GACGCCCCTTCATTCTGGGGCGGTGATATTGAGCTACCGAACAAATTACA
AAGTTGATTAGGCATTTTATTGTGTGGATATAATATTTTTTTGTAAATTT
ATGAATTTAAATCTTATTTTCTTTTATACCAACGATAACATTGAAATCAC
TTCATCATTATCTCCTTAATACATTTTCATGTCTTGGAATTTGTTTATCG
ATTGCTGTCTCCATTTTTTTTTTTACTATGACTACCTTAAACTTTGAATT
GATGGAACAGTTTTTTGATCGATAACGACTAAGGATCTAAAAATCACAGA
CCAAGGTTAAAAAAGTTTTCAGGAATCGAGTTTAAACTAGGGTAGGGCGT
CAACAGTCATTTTTGGGGCAAAGTCAGAAAATTCAAGATGTAGTGTTTTT
TTTATGAAAATTTAACCTATTGTGAGGCATTCTGCGCAATTTTTAAGGTC
AGAAGTTCAAAATTGGCCGAACCCCCCTGGGGGTACTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATCTTATTTTTTTCACTTGCTGTACTAAA
TTTTATGAAGAAACAACAAAATAATCATATTGGATTGAAAATTGTGCCCA
TTAGAGCCCTAAACGAGCCGTTTTGAGCCAATTTTGGGTAGCAAAATGCT
TTTTAAGGCCAATTTTGCAAGCTCATAAACTTTAAACTGATTGAATCACA
TGCCTGAAATTTTCAGAGATGGAAGTCTTCAATAAAGTCTCTACGCAAAA
TGAATTCCAAGTTTTTCACTTTTTTCAAAAAATCATAATGGCGTCTTCAA
AAATCGCTTTTTAGCAAAAAAAAATCATATTTCTCAAAAAATAGCATTTT
TTAAGGCAAGCTTCTACAAACTGTGTTTAAATGCTGACTGAAATTTTTTT
TGCAGTGATAGTATACTGGAGATACTCCAGGGAAATCAAAATCATTTGCG
TCTGGGATGGCGGTCTATGTCCGCCATTATGGAAATAAAATCCCTGCTAA
GAGCCATTTTTCAGGCAAAAACCCAAATTTGGACTGAAAAAATCTCTATA
ATGTCAATAGACATGGGTCCAAATTTTTTTGCAGTGATAGTCTTCTGGAA
ACACTCCAGGGAAATCAAAATTGTTTGGGTTTAGGATTTAGGTATATCCG
CCATTATGGAATTGAAATATGTGTTAAAACTGGCTAAAATACAACGTTTC
AAGCAAAAACCCCGTTTTTGAATAAAAATTGCTCTAAAATGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTATGGAAATGAAA
TCTCTGTTAAAATGCTATATATTTCCATCCGATACATCATAATTGACTAA
ATATTTTGTATATTATATTAAGCTTAGAATGTGAATTTACAATCCTTTAA
TTTAGAAATACTAGTTAAAATAAATTATTTAAAAAATCCCATTTCACTCA
ACAATTCTTTATAGCCCACTTACATTTCCATTTTCAAGACTTGTTCCGTC
AAAAAAAGATTGAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAAAGATTGAATTTTAGCTTGAAATATTATATACATTT
TAAAACTGGCTTCAGTTTAAAAATTGCGGTCCCAGAAGCATGTTATACCT
GAATAGTTTTTACAGACCACTATCACTGCAAAAAGATTTTAGGTTCATGT
CTATTGCCATATTAGAGCAGTTTTTAAGTCAATATGGGATTTTTGCTTGA
AATGTTGCAATTTAGCCAGTTTAGCACAGATTTCAATTCCATAATGGCGG
ATATACCCAAATCCTAAACCCAAACAATTTTGATTTCCCTGGAGTATTTC
CAGAAGACTATCACTGCAAAAAGATTTTAGCTTCATGTCTATTGCCATTT
TTAAGATTTTTCGAGTCAAAATTTGGATTTTTGATTGAAATATTGCGTTT
CAGCAGGAATTTCAATTTCAAAATAGTGGATATACCCAAATCCCAAGCCC
AGATGACTTTGATTTTCCTGCAGTATTTCCAGAATACTATCACTGCAAAA
AAATTTGGACCCATGTCTATTGACATTATAGAGATTTTTCAGTCCAAATT
TGGGTTTTTGCCTGAAAAATGGCTCTTAGCAGGGATTTTATTTCCATAAT
GGCGGACATAGACCCATCCCAGACGTAAATGATTTTGATTTCCCTGGAGT
ATCTCCAGTATACTATCACTGCAAAAAAAATTTCAGTCAGCATTTAAACA
CAGTTTGTAGAAGCTTGCCTTAAAAAATGCTATTTTTTGAGAAATATGAT
TTTTTTTTGCTAAAAAGCGATTTTTGAAGACGCCATTATGATTTTTTGAA
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTAGGGC
TCTAATGGGCACAATTTTCAATCCAATATGATTATTTTGTTGTTTCTTCA
TAAAATTTAGTACAGCAAGTGAAAAAAAAAAAGATTTGCAATAGTTTTGA
CATATTTACAGGCCTGAAAAGGCCTGAAAATGCCATTTTTCCAATTTTTG
CCTGTAGTGCGAATCAGTACCCCCAGGGGGGTTCGGCCAATTTTGAACTT
TTGACCTTAAAAATTGCGCAGAATGCCTCACAATAGGTTAAATTTTCATA
AAAAAGCACTACATCTTGAATTTTCTGACTTTGACGCCCCACCCTATTTA
AACTTCTTTTTCAAAATTTAACAGCTAAACCCTCTTTCGTTAGCTTTGTG
GGAATTTTTAAAAAAATTTTTCTTCTCTTTCTTTGTAGATCATCACTCAA
AGTATACGAGAGCTTCTTGGTATCGAAGATCCTCAATGGAGCCGATCCAT
CTCATTGCCACCGCGCGAGACGCTTTCGCATTTCTTGGAACGGAAATCAG
TTCGCGGTGAGGAGAGTAAAAATTTAACGTTCGAAAAACATGTGCGTCAA
TTAAAAAAATTCATGCTTCATGACAGTTGATCGATTCTCTGACAATAAAG
AATGAAATAAAGGACAAGGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006481-exon-sc0000067-1575043694:114277..114534 | TCONS_00006481-exon-sc0000067-1575043694:114277..114534 | Clytia hemisphaerica | exon |
| TCONS_00006481-exon-sc0000067-1575043694:107513..107746 | TCONS_00006481-exon-sc0000067-1575043694:107513..107746 | Clytia hemisphaerica | exon |
| TCONS_00006481-exon-sc0000067-1510915933:114277..114534 | TCONS_00006481-exon-sc0000067-1510915933:114277..114534 | Clytia hemisphaerica | exon |
| TCONS_00006481-exon-sc0000067-1510915933:107513..107746 | TCONS_00006481-exon-sc0000067-1510915933:107513..107746 | Clytia hemisphaerica | exon |
| TCONS_00006481-exon-sc0000067-1491911889:114277..114534 | TCONS_00006481-exon-sc0000067-1491911889:114277..114534 | Clytia hemisphaerica | exon |
| TCONS_00006481-exon-sc0000067-1491911889:107513..107746 | TCONS_00006481-exon-sc0000067-1491911889:107513..107746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000067 | supercontig | sc0000067:107513..114534 - |
Blast
BLAST of TCONS_00006481 vs. Swiss-Prot (Human)
Match: SAM15 (Sterile alpha motif domain-containing protein 15 OS=Homo sapiens GN=SAMD15 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.182e-24 Identity = 46/108 (42.59%), Postives = 78/108 (72.22%), Query Frame = 1
Query: 94 LHWSPQDVGNWVKNTLNYPQYEDCFISNFVGGQKLIWIDADNLVKLGVTDFKHIKIITQSIRELLGIEDPQWSRSISLPPRETLSHFLERKSVRGEESKNLTFEKHVR 417
L+W P++V W+ + L +PQY++CFI+NF+ G+KLI ++ NL ++G+T+F+ +K I++ +ELL IE+P + RSISLP R+ + +LE+K G +S +LT + V+
Sbjct: 543 LNWDPEEVAEWI-SQLGFPQYKECFITNFISGRKLIHVNCSNLPQMGITNFEDMKAISRHTQELLEIEEPLFKRSISLPYRDIIGLYLEQKGHTGIKSDSLTLSEFVK 649
The following BLAST results are available for this feature:
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