TCONS_00006476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006476
Unique NameTCONS_00006476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006476 ID=TCONS_00006476|Name=TCONS_00006476|organism=Clytia hemisphaerica|type=transcript|length=1668bp
CCCGTCAGCCGTGATGCATGGCGGGATCGTTCTTGGTCCATTGATATTGG
TGGGACTTGGAGCAATCTGTATGTATAACATCAAATTACTGGTTGACACT
GCGCGCAATATGAGACATAATTTGAACATCAGCCGGATCAGCTACTCATC
AATatcagaaaatgtttttcaagcGTATGGAAAGCGTGCTGGCACCGTTG
CAAGGTACCTGACAGACTTTTTGTTGTGTAGTTTACAAATTGGTTTTTGT
TGTGTTTATGTTGTCTTCATCGCGCACAACATCCAGTTCGCTGTTGGTTC
CTTGGACGTCCGCATATGGATGCTGGTCATTCTACCTTTTCTTATTGTAC
CCTCATTGATCAGTAACATTCGAACATTGGCATACCTCACAACGATAGGG
AATGTTATTGTTCTGGTTGGTTTGGGAACGATTTATCAATATCTTCTTAC
GCATGTACAAAGCCCGTCCAGATTGCCGGCAACGAACGGTGTTTTGAACG
CATGCGTAGCATTCGGACAGATTGTGTATGCTTTCGAAGGAGTGGCAGTG
ATTTTACCAACTGAAGAGAAATTGAAATCACGCGGCTCATTCGATTGGTT
ATTCAAAGTATCAGGCTGTCTGGTCATCCTTTTATACGCTTCCATGGGTA
TCCTTGGTTACCTGACTTTCGGACAAGAGACGTTGGGAAGTATCACTTTG
AATCTACCGAACACAGCtgTTTATCAAACGTTACAAGGAGCTTTCTGTTT
GATGGTTTTCTTCACTTACCCCCTACAACTCTTCGTCTCGGTGGacatca
tcaaaagttatttCCCGCCATCTAAAAGTACCGACACCGAAAGCTTCCTA
GATGATGCGTTGTTGAAATCACTTCTAGTTTTTCTCACGTGTGTTCTTGG
TATCTGCATCCCACAACTCGATAATTTCATGTCATTGGTTGGATCAGTGT
GTGGCGTTTCTGTTGGTCTTATTCTACCGCCCATTATTCACGCCCAATGC
TTTTGGAATCAAGGCTTAACACCCCGGCAATTCGTCCTTGACATTTTCAT
CCTGGCGATTGGCGTTTTTACATTTGTGACTGGCTTTACGGCATCCATGT
ACGCCATTTTTCATCGATTTGTGGAATACCCAGGGCACACAACTGGACCC
ATTGTCTAATTGTTGACTTCACCCACCGTACTCACGCCTACTTTTATAAC
AAAAGTTAACTTTTAAAATCAATCTGATTGGCTTCTGTTTTGCCTACCTT
ACCATAGTTCGAGCAATGGTCTAGGTCATTAAAATCTCCAAATGGAACTT
GATTGTTATTACGCCGATATGAACCAATCAGCGGTTGGGAAACTAATTTG
GAAATTAACCGGAATCTTTGAAAGTAGAGCGAAATTACGGTGCAGAATTC
ACAATCGGGAAATTCTATTTGCATTTCATAGGCGTAgtgagataccctgc
aaaatttgcAGACGAGAGcagtttttacgacactgtaattattgtctttg
tttcatcaaaagataatagatatgtcataaacgtctgcactccttCATAG
TGAATATCACTGTGGCTTGCTTTTCGATCatatttttaattcaattttta
atagaaatatttttaatttatatcaTCTTTTAAAAAGCgagaaatatatt
ttatttaataattggggg
Run BLAST on NCBI

transcript from alignment at sc0000067:72133..77570-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006476 ID=TCONS_00006476|Name=TCONS_00006476|organism=Clytia hemisphaerica|type=transcript|length=5438bp|location=Sequence derived from alignment at sc0000067:72133..77570- (Clytia hemisphaerica)
CCCGTCAGCCGTGATGCATGGCGGGATCGTTGTAAGTGCTTTATGTTGAT
TCTTATTCTTTAACATTAATGTATTGATCCCAAAGTCTGAACAAAAACTG
GAAGGAATATTTCTACAGCTGATCTATGCCTCACAAAATAGTAGATAATA
TCTGGTTGAAAAAGATTTTTGATGTGTCTCAGAATAGTAGCAGGATCGTT
GAAGATATTTGCACATGAAGGAAAAACGATCTACAAGTGTCGATTCGAGT
CGTTTTTCTAGAACTCGGTGGTTCTGACGCTAGGATTTTTTTATATAGCT
TGGTCCATTGATATTGGTGGGACTTGGAGCAATCTGTATGTATAACATCA
AATTACTGGTTGACACTGCGCGCAATATGAGACATAAGTGAGTGACGTAT
TTCTTGCCTTTGTGTGTCTTTTATCGCTGTTTGTTATTCACTAAAAAATA
CTGTTATGGGCACATACTTGATCTTTACGTCTCTGTTTAGGGACCAATAG
CTTCTACTTTGAATCCTTGTGAAAAAAGCATCACCAGGGATTTATGCGTT
GGCTTAACTTTGATCAATATCTTGTCCATTTGAAACCCTTTTTATCTCCT
TTTTTAAACAATTTTCTTCTCTTTCGCTTTGATAAATAGCATGTCCATTT
GAAAACCACCTTCTACCTCCTCCTTTGTACAACAACAGCATTTCTCTTAT
TTTTCTTCAGTTTGAACATCAGCCGGATCAGCTACTCATCAATATCAGAA
AATGTTTTTCAAGCGTATGGAAAGCGTGCTGGCACCGTTGCAAGGTTATT
ATTATTTCCCTTCAATTACACACCCCGAATTCTTAATGATGATACATGAT
GCTTGTTTTCTGATTTCTATTGACCTGATTACTGCCATTTTCCTATTCAT
AATACACAGTTCGCCTTTGTGTTCCTTTTTATGATATCTATTTCCTTTTG
TTTCCCGACATACTGTACAGGAGTAATCTTTTGTCTCATAAATCCTTTTT
TAATCTGTTTCTTTTTCAGGTACCTGACAGACTTTTTGTTGTGTAGTTTA
CAAATTGGTTTTTGTTGTGTTTATGTTGTCTTCATCGCGCACAACATCCA
GTTCGCTGTTGGTTCCTTGGACGTCCGCATATGGATGCTGGTCATTCTAC
CTTTTCTTATTGTACCCTCATTGATCAGTAACATTCGAACATTGGCATAC
CTCACAACGATAGGGAATGTTATTGTTCTGGTTGGTTTGGGAACGATTTA
TCAATATCTTCTTACGCATGTACAAAGCCCGTCCAGATTGCCGGCAACGA
ACGGTGTTTTGAACGCATGCGTAGCATTCGGACAGATTGTGTATGCTTTC
GAAGGAGTGGCAGTGGTACGTGCTTTATTAGGGTTTTACTCTCAACTGTT
ACTTTAGCCTGGAGGCCACTAAGGATTTCTGATAGACTGGATAGCGTTAT
TAAGTATAGGTCAAGTCTCTACTGACTCCAAAACATGCAACAAGACAGAA
AAAATGCTAGAAATATGAACCTAGTATGAACCATCTTTTCCTCTTCGCAG
ATTTTACCAACTGAAGAGAAATTGAAATCACGCGGCTCATTCGATTGGTT
ATTCAAAGTATCAGGCTGTCTGGTCATCCTTTTATACGCTTCCATGGGTA
TCCTTGGTTACCTGACTTTCGGACAAGAGACGTTGGGAAGTATCACTTTG
AATCTACCGAACACAGCGTAAGTGTTTTCTCTTTTACACATTTTTGTGTC
ATCTCAAGAAAAGGTAGATGTAGTAGAGTATTCATGAAAAGGTGTGAAAC
AGGTCGTTTTAGATTTAGATTTCAAACGCTATGGTTTCGGCCCATCTACA
CACCCCTGTCTCACAGCCCCGGTGAAACTTCTTCCCAAAGCGAGGGTAAA
AAATTCTTTCGAAATCCCAATGCGGATAGAAATCCTTTTGTCCTCAGGTA
AAAAAATCCAGTGGGGTATTTTCCACAGCTCAGACGAAATTTTGGCCAAA
TTTTCAAGTGGGGCTGGGATCCCAGCGGGTCTGTGACACGGGAGTGTATC
TACCATATGTTGAACGGTGAAAAAGAGTGTGGCTATTATTATTTCATTTT
TTCCAGACATGGTTTGGGACTCGATCCTTTCTCAAGGGAATCCATCTACA
ATAGTTTGTTGAGACTAATGATTAATTCCTACATCACTTCGAATTTATTG
TTTTTGAAATTGAAAAGGGCTTCACTTTTTACTTGATGTTGGTGACATAT
CTACGGAAACCGAATTCTTTTTTTATAACTGGAGCGTATTTTGAGACCAC
AAAAGACGTTCGGCAGTAGTAATTTTGTGAAATTCTCTATTTTTGCATTT
CAGTGTTTATCAAACGTTACAAGGAGCTTTCTGTTTGATGGTTTTCTTCA
CTTACCCCCTACAACTCTTCGTCTCGGTGGACATCATCAAAAGTTATTTC
CCGCCATCTAAAAGTACCGACACCGAAAGCTTCCTAGATGATGCGTTGTT
GAAATCACTTCTAGTTTTTCTCACGTGTAAGTTTGTTCAAGAATTTTTCG
AATCTTTCCTAACAATAACAGTTTTTAATTTTAATCGGCTTGAGCAAAGT
TAAGTTTTTAAATGACAATGTAACATTGGGAACGATCTGACCAAGAAACT
GAAACAGGAGTCTCTCGATTTTCAACTATACTTCGACGAAGCATGTTCGA
TATGCACGCCTACGAACTAACTTACAGATCCTTGAGAGCTCTATGCACCA
CTTCGATTGTTTGTTTAGTAAATTTGTCCCGTCCAATCTTTTCTGTTTTA
ATTCTAAAATCTATCTTGACCTTACTGACTTGTTTTTTGGACCTACCCCG
GTGGAGGTCCTATAAATTAACCTGTGTTTGTTCGTCCGTCCGTCCGTTCG
TTCGTCTGTTACCAACTTTTCTCAGGATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTTGTGTTCTGAATGATTGTTTAACGGTCATGTTCACG
TAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAAAAG
TATCACTTGTCTATTTTCAAGTGAATATGTGTTAGAAAGGATTTATAATA
GGTTCAATGAGCTTCAATATTATATTATTAAAATATTGTTTCATCCGTTT
TCATCGGCAGGTGTTCTTGGTATCTGCATCCCACAACTCGATAATTTCAT
GTCATTGGTTGGATCAGTGTGTGGCGTTTCTGTTGGTCTTATTCTACCGC
CCATTATTCACGCCCAATGCTTTTGGAATCAAGGCTTAACACCCCGGCAA
TTCGTCCTTGACATTTTCATCCTGGCGATTGGCGTTTTTACATTTGTGAC
TGGCTTTACGGCATCCATGTACGCCATTTTTCATCGATTTGTGGAATACC
CAGGGCACACAACTGGACCCATTGTCTAATTGTTGACTTCACCCACCGTA
CTCACGCCTACTTTTATAACAAAAGTTAACTTTTAAAATCAATCTGATTG
GCTTCTGTTTTGCCTACCTTACCATAGTTCGAGCAATGGTCTAGGTCATT
AAAATCTCCAAATGGAACTTGATTGTTATTACGCCGATATGAACCAATCA
GCGGTTGGGAAACTAATTTGGAAATTAACCGGAATCTTTGAAAGTAGAGC
GAAATTACGGTGCAGAATTCACAATCGGGAAATTCTATTTGCATTTCATA
GGCGTAGTGAGATACCCTGCAAAATTTGCAGACGAGAGCAGTTTTTACGA
CACTGTAATTATTGTCTTTGTTTCATCAAAAGATAATAGATATGTCATAA
ACGTCTGCACTCCTTCATAGTGAATATCACTGTGGCTTGCTTTTCGATCA
TATTTTTAATTCAATTTTTAATAGAAATATTTTTAATTTATATCATCTTT
TAAAAAGCGAGAAATATATTTTATTTAATAATTGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003680XLOC_003680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006476-exon-sc0000067-1575043694:77540..77570TCONS_00006476-exon-sc0000067-1575043694:77540..77570Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1575043694:77184..77272TCONS_00006476-exon-sc0000067-1575043694:77184..77272Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1575043694:76777..76860TCONS_00006476-exon-sc0000067-1575043694:76777..76860Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1575043694:76206..76551TCONS_00006476-exon-sc0000067-1575043694:76206..76551Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1575043694:75854..76020TCONS_00006476-exon-sc0000067-1575043694:75854..76020Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1575043694:75045..75217TCONS_00006476-exon-sc0000067-1575043694:75045..75217Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1575043694:72133..72910TCONS_00006476-exon-sc0000067-1575043694:72133..72910Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:77540..77570TCONS_00006476-exon-sc0000067-1510915933:77540..77570Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:77184..77272TCONS_00006476-exon-sc0000067-1510915933:77184..77272Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:76777..76860TCONS_00006476-exon-sc0000067-1510915933:76777..76860Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:76206..76551TCONS_00006476-exon-sc0000067-1510915933:76206..76551Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:75854..76020TCONS_00006476-exon-sc0000067-1510915933:75854..76020Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:75045..75217TCONS_00006476-exon-sc0000067-1510915933:75045..75217Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1510915933:72133..72910TCONS_00006476-exon-sc0000067-1510915933:72133..72910Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:77540..77570TCONS_00006476-exon-sc0000067-1491911889:77540..77570Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:77184..77272TCONS_00006476-exon-sc0000067-1491911889:77184..77272Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:76777..76860TCONS_00006476-exon-sc0000067-1491911889:76777..76860Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:76206..76551TCONS_00006476-exon-sc0000067-1491911889:76206..76551Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:75854..76020TCONS_00006476-exon-sc0000067-1491911889:75854..76020Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:75045..75217TCONS_00006476-exon-sc0000067-1491911889:75045..75217Clytia hemisphaericaexon
TCONS_00006476-exon-sc0000067-1491911889:72133..72910TCONS_00006476-exon-sc0000067-1491911889:72133..72910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:72133..77570 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	2.68276	1.75316	8.45471	7.43785	13.9925	11.2568	0.271259	0	2.39799	1.01907	35.4637	47.2864	16.9955	18.934	0	1.03824	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00006476 vs. Swiss-Prot (Human)
Match: S36A1 (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 4.080e-54
Identity = 125/373 (33.51%), Postives = 204/373 (54.69%), Query Frame = 2 
Query:   65 ICMYNIKLLVDTARNMRHNLNISRISYSSIS----ENVFQAYGKRAGTVARYLTDFLLCSLQIGFCCVYVVFIAHN----IQFAVGS---------------LDVRIWMLVILPFLIVPSLISNIRTLAYLTTIGNVIVLVGLGTIYQYLLTHVQSPSRLPATNGVLNACVAFGQIVYAFEGVAVILPTEEKLKSRGSFDWLFKVSGCLVILLYASMGILGYLTFGQETLGSITLNLPNTAVYQTLQGAFCLMVFFTYPLQLFVSVDIIKSYFPPSKSTDTESFLDDALLKSLLVFLTCVLGICIPQLDNFMXXXXXXXXXXXXXXXPPIIHAQCFWNQGLTPRQFVLDIFILAIGVFTFVTGFTASMYAIFH 1114
            + ++ + +LV  A +    LN S + Y        E+   ++ +      R + DF L   Q+GFCCVY VF+A N    I+ A G+               +D R++ML  LPFL++   I N+R L+  + + N+ +LV L  IYQ+++  +  PS LP         + FG  +++FEG+ ++LP E K+K    F  +  +   +V +LY S+G LGYL FG    GSITLNLPN  +YQ+++  + + +FFTY LQ +V  +II  +F  S++ +    + D  ++++LV LTC+L I IP+LD  +SLVGSV   ++ LI+PP++    F+++G++P     D  I  +G   FV G   ++Y +  
Sbjct:   90 VAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFF-VSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLTIFKDALISILGFVGFVVGTYEALYELIQ 461
The following BLAST results are available for this feature:
BLAST of TCONS_00006476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S36A14.080e-5433.51Proton-coupled amino acid transporter 1 OS=Homo sa... [more]
back to top