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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006470 ID=TCONS_00006470|Name=TCONS_00006470|organism=Clytia hemisphaerica|type=transcript|length=6300bpRun BLAST on NCBI transcript from alignment at sc0000067:5400..47432- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006470 ID=TCONS_00006470|Name=TCONS_00006470|organism=Clytia hemisphaerica|type=transcript|length=42033bp|location=Sequence derived from alignment at sc0000067:5400..47432- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006470 vs. Swiss-Prot (Human)
Match: PCX1 (Pecanex-like protein 1 OS=Homo sapiens GN=PCNX1 PE=1 SV=2) HSP 1 Score: 1286.94 bits (3329), Expect = 0.000e+0 Identity = 664/1325 (50.11%), Postives = 884/1325 (66.72%), Query Frame = 1
Query: 1591 RGTLRTRN-RQRTNSGS---PATSLLN-----QENEQSGSGSAETK-------------------------HLAMTHEDTSTGAVHCFQDEFGQWYTYTFGDDSAQPIAQPSLVDFIQTQIPSTSRRRESNA--SNSLLNDSTS---YLSQLDNDPLRILNDEMTIPTRWRYDFQSQRSNFSG--ATSTVKVEQPAPK--KYYMLPIIRDYSVKVSFDRLALLSLLDRNKNHVQAFLSVVLATLVAFLGYNLLTRDYFYDFWLFVICFIIAKCQFSLLKSVQPDSASPIHGHNSIIVFSRSVYFCVLAVFIIIVDEGAKMTSENQSVTLYGVQLYSHTTLVFARDLLVGLLLAFPVVFLLGLLPQINTFIMHSLEQFDIHIFGGSATTSLSASIYAFFRAILFTLILVPFCYIPLEISSNTNAFRSQH--VLFSVFSGLLLALSYQLSRSTSNPEILWRVFERFCCVCCKTPTSNGDGVGGNP-SELNDPLPDKLLQTVKSRAVHDLITCIIISFLVFAVHLSTAFTTLQPSLSYIIYILTGVVGILTHYLLPQLRKQLPWLFVSSPILKSYEYNLYEWQEHSKIMWFERLYVILSFVEKNVLYPIVYLSAITQHSDQVA--QKFGNLAASFIITICAIKLLRSAFTNTSRQHIILIWTVLFFEYDFRGCSETFLIDYFFMSIFVDKTMELYLKFKFILTYTAPWQITWGSAFHAFAQPVSVPHCGMLIVQAIVAAFFSSPLNPFLGSAIFMTSYMRPIKFWEKDYNTKRVDHSNTRLSSHIDSNPGADDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGNFSNGDCFIMASDYLNALVHIIEVGNGYVTFQLRGLEFRGTYCQQREVEAITENVDDDEGCCCCHVGHVQNLLSFNAAFGLRWXHSVWLFSGCCCCHVGHVQNLLSFNAAFGLRWLAWEVVQSKYILEGYSVSDNTAVTMFQMFDLRKIFITYYVTSIVFYCVRNKKLKTWLADXXXXXXXXXXXXXTFVDFDTVFRPVTDKDYDLAQGGVTRASFCQNYHEWLVCCNMHRPADQQIEDDGVNSRVVTLCFALSLLGRRLLSTASNNQWNAALKSFLHGLHALFKGDFRVTAAKDEWVFADSDLALLRQVVAPAVRMALKLHQDHFTCVDEFDDNNVLYDTISSHEEQFVICHEGHPSWRQAVLNNRSNLLALRYVIDDGTDDYKIIMLNKRCLNFRVIKVNKECVRGLWAGQLQELIFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIYVSPLTTSYCETNSFYNETTVGNLNGSNIKNFFRSCYMAVYNRFAGHCRNGGN 5421
R T R + R+R N+GS P T L+ Q+ +Q +A+ K HL +H++ S DE G++ + + SLV+F + RR SN ++S ++ STS Y + + P LN +TI T + Q + S A + E+ A K YY I+ + ++FDRL LL+L DRN+ ++ L+V+LA LVAFLG LL + +F D W+F C +IA CQ+SLLKSVQPDS+SP HGHN II +SR VYFC+ I ++D G++ + + LYG+ + + ARDL++ L FP+VF +GLLPQ+NTF+M+ EQ DIHIFGG+ATTSL A++Y+F +I+ +L CY L+ +++ QH VLFS+F GLL+A+SY LSR +S+P +L+ + + + KT N + +P SE+ DPLP+KL +V R DL+ CI+I L FA+H+ST FT LQP+L Y++Y L G VG +THY+LPQ+RKQLPW S P+LK+ EYN YE + + +MWFE+L+V L FVEKN++YP++ L+ ++ ++ +A +K + +IT+ +KLLRS+F++ + Q++ +I+TVLFF++D+ SET L+D FFMSI +K EL K +F+ TY APWQITWGSAFHAFAQP +VPH ML +QA V+AFFS+PLNPFLGSAIF+TSY+RP+KFWE+DYNTKRVDHSNTRL+S +D NPG+DDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGN+S GDCFI+ASDYLNALVH+IE+GNG VTFQLRGLEFRGTYCQQREVEAITE V++DEG CCC GH+ ++LSFNAA F RWLAWEV+ +KYILEGYS++DN+A +M Q+FDLRK+ TYYV I++Y + KL+ WLA+E++ L +VD D F P D+DYD G++R SFC Y W+ C+ R ++ D S +VTLC+ L +LGRR L TAS++ ++ L+SFL+GLHALFKGDFR+++ +DEW+FA D+ LLR+VV P +RM++KLHQDHFT DE+DD VLY+ I SHE+ VI HEG P+WR AVL N +LLALR+V+DDGT++YKIIMLN+R L+FRVIKVNKECVRGLWAGQ QEL+FLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPI+VSPLTTSY +++ + G ++ NI+NF S + + C +GGN
Sbjct: 785 RSTFRRQAVRRRHNAGSNPTPPTLLIGSPLSLQDGQQGQQSTAQVKVQSRPPSQAAVLSASASLLVRNGSVHLEASHDNASAVGGSSLHDELGKFSSTLYETGGCDM----SLVNF------EPAARRASNICDTDSHVSSSTSVRFYPHDVLSLPQIRLNRLLTIDTDL---LEQQDIDLSPDLAATYGPTEEAAQKVKHYYRFWILPQLWIGINFDRLTLLALFDRNREILENVLAVILAILVAFLGSILLIQGFFRDIWVFQFCLVIASCQYSLLKSVQPDSSSPRHGHNRIIAYSRPVYFCICCGLIWLLDYGSRNLTATK-FKLYGITFTNPLVFISARDLVIVFTLCFPIVFFIGLLPQVNTFVMYLCEQLDIHIFGGNATTSLLAALYSFICSIVAVALLYGLCYGALK-----DSWDGQHIPVLFSIFCGLLVAVSYHLSRQSSDPSVLFSLVQ--SKIFPKTEEKNPE----DPLSEVKDPLPEKLRNSVSERLQSDLVVCIVIGVLYFAIHVSTVFTVLQPALKYVLYTLVGFVGFVTHYVLPQVRKQLPWHCFSHPLLKTLEYNQYEVRNAATMMWFEKLHVWLLFVEKNIIYPLIVLNELSSSAETIASPKKLNTELGALMITVAGLKLLRSSFSSPTYQYVTVIFTVLFFKFDYEAFSETMLLDLFFMSILFNKLWELLYKLQFVYTYIAPWQITWGSAFHAFAQPFAVPHSAMLFIQAAVSAFFSTPLNPFLGSAIFITSYVRPVKFWERDYNTKRVDHSNTRLASQLDRNPGSDDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGNYSTGDCFILASDYLNALVHLIEIGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGFCCCEPGHIPHMLSFNAA--------------------------------FSQRWLAWEVIVTKYILEGYSITDNSAASMLQVFDLRKVLTTYYVKGIIYYVTTSSKLEEWLANETMQEGLRLCADRNYVDVDPTFNPNIDEDYDHRLAGISRESFCVIYLNWIEYCSSRRAKPVDVDKD---SSLVTLCYGLCVLGRRALGTASHHM-SSNLESFLYGLHALFKGDFRISSIRDEWIFA--DMELLRKVVVPGIRMSIKLHQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKVNKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHEQLKDILGGPISLGNIRNFIVSTWHRLRKGCGAGCNSGGN 2046 HSP 2 Score: 86.2705 bits (212), Expect = 1.924e-16 Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = 2
Query: 53 MGSQTLEILRQGIWASITGGWFFDPHQEIFCNTFHMYLWLALLLIPFVIHLTAETVILPSILYPLTIFLFFIITKLVNHKLHILFDGEELL 325
MGSQTL+ILRQG+WA+++GGW++DPHQ F N H+YLWL LL +PF +++ + ++ +Y I FI+ K+VN++LH D E++
Sbjct: 1 MGSQTLQILRQGVWAALSGGWYYDPHQATFVNALHLYLWLFLLGLPFTLYMALPSTMIIVAVYCPVIAAVFIVLKMVNYRLHRALDAGEVV 91 The following BLAST results are available for this feature:
BLAST of TCONS_00006470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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