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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006461 ID=TCONS_00006461|Name=TCONS_00006461|organism=Clytia hemisphaerica|type=transcript|length=3735bpRun BLAST on NCBI transcript from alignment at sc0000067:5400..31718- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006461 ID=TCONS_00006461|Name=TCONS_00006461|organism=Clytia hemisphaerica|type=transcript|length=26319bp|location=Sequence derived from alignment at sc0000067:5400..31718- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006461 vs. Swiss-Prot (Human)
Match: PCX1 (Pecanex-like protein 1 OS=Homo sapiens GN=PCNX1 PE=1 SV=2) HSP 1 Score: 1162.52 bits (3006), Expect = 0.000e+0 Identity = 557/956 (58.26%), Postives = 721/956 (75.42%), Query Frame = 1
Query: 10 LVF--ARDLLVGLLLAFPVVFLLGLLPQINTFVMHSLEQFDIHIFGGSATTSLSASIYAFFRAILFTLILVPFCYIPLEISSNTNAFRSQH--VLFSVFSGLLLALSYQLSRSTSNPEILWRVFERFCCVCCKTPTSNGDGVGGNP-SELNDPLPDKLLQTVKSRAVHDLITCIIISFLVFAVHLSTAFTTLQPSLSYIIYILTGVVGILTHYLLPQLRKQLPWLFVSSPILKSYEYNLYEWQEHSKIMWFERLYVILSFVEKNVLYPIVYLSAITQHSDQVA--QKFGNLAASFIITICAIKLLRSAFTNTSRQHIILIWTVLFFEYDFRGCSETFLIDYFFMSIFVDKTMELYLKFKFILTYTAPWQITWGSAFHAFAQPVSVPHCGMLIVQAIVAAFFSSPLNPFLGSAIFMTSYMRPIKFWEKDYNTKRVDHSNTRLSSHIDSNPGADDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGNFSNGDCFIMASDYLNALVHIIEVGNGYVTFQLRGLEFRGTYCQQREVEAITENVDDDEGCCCCHVGHVQNLLSFNAAFGLRWLAWEVVQSKYILEGYSVSDNTAVTMFQMFDLRKIFITYYVTSIVFYCVRNKKLKTWLADXXXXXXXXXXXXXTFVDFDTVFRPVTDKDYDLAQGGVTRASFCQNYHEWLVCCNMHRPADQQIEDDGVNSRVVTLCFALSLLGRRLLSTASNNQWNAALKSFLHGLHALFKGDFRVTAAKDEWVFADSDLALLRQVVAPAVRMALKLHQDHFTCVDEFDDNNVLYDTISSHEEQFVICHEGHPSWRQAVLNNRSNLLALRYVIDDGTDDYKIIMLNKRCLNFRVIKVNKECVRGLWAGQLQELIFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIYVSPLTTSYCETNSFYNETTVGNLNGSNIKNFFRSCYMAVYNRFAGHCRNGGN 2856
LVF ARDL++ L FP+VF +GLLPQ+NTFVM+ EQ DIHIFGG+ATTSL A++Y+F +I+ +L CY L+ +++ QH VLFS+F GLL+A+SY LSR +S+P +L+ + + + KT N + +P SE+ DPLP+KL +V R DL+ CI+I L FA+H+ST FT LQP+L Y++Y L G VG +THY+LPQ+RKQLPW S P+LK+ EYN YE + + +MWFE+L+V L FVEKN++YP++ L+ ++ ++ +A +K + +IT+ +KLLRS+F++ + Q++ +I+TVLFF++D+ SET L+D FFMSI +K EL K +F+ TY APWQITWGSAFHAFAQP +VPH ML +QA V+AFFS+PLNPFLGSAIF+TSY+RP+KFWE+DYNTKRVDHSNTRL+S +D NPG+DDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGN+S GDCFI+ASDYLNALVH+IE+GNG VTFQLRGLEFRGTYCQQREVEAITE V++DEG CCC GH+ ++LSFNAAF RWLAWEV+ +KYILEGYS++DN+A +M Q+FDLRK+ TYYV I++Y + KL+ WLA+E++ L +VD D F P D+DYD G++R SFC Y W+ C+ R ++ D S +VTLC+ L +LGRR L TAS++ ++ L+SFL+GLHALFKGDFR+++ +DEW+FA D+ LLR+VV P +RM++KLHQDHFT DE+DD VLY+ I SHE+ VI HEG P+WR AVL N +LLALR+V+DDGT++YKIIMLN+R L+FRVIKVNKECVRGLWAGQ QEL+FLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPI+VSPLTTSY +++ + G ++ NI+NF S + + C +GGN
Sbjct: 1108 LVFISARDLVIVFTLCFPIVFFIGLLPQVNTFVMYLCEQLDIHIFGGNATTSLLAALYSFICSIVAVALLYGLCYGALK-----DSWDGQHIPVLFSIFCGLLVAVSYHLSRQSSDPSVLFSLVQ--SKIFPKTEEKNPE----DPLSEVKDPLPEKLRNSVSERLQSDLVVCIVIGVLYFAIHVSTVFTVLQPALKYVLYTLVGFVGFVTHYVLPQVRKQLPWHCFSHPLLKTLEYNQYEVRNAATMMWFEKLHVWLLFVEKNIIYPLIVLNELSSSAETIASPKKLNTELGALMITVAGLKLLRSSFSSPTYQYVTVIFTVLFFKFDYEAFSETMLLDLFFMSILFNKLWELLYKLQFVYTYIAPWQITWGSAFHAFAQPFAVPHSAMLFIQAAVSAFFSTPLNPFLGSAIFITSYVRPVKFWERDYNTKRVDHSNTRLASQLDRNPGSDDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGNYSTGDCFILASDYLNALVHLIEIGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGFCCCEPGHIPHMLSFNAAFSQRWLAWEVIVTKYILEGYSITDNSAASMLQVFDLRKVLTTYYVKGIIYYVTTSSKLEEWLANETMQEGLRLCADRNYVDVDPTFNPNIDEDYDHRLAGISRESFCVIYLNWIEYCSSRRAKPVDVDKD---SSLVTLCYGLCVLGRRALGTASHH-MSSNLESFLYGLHALFKGDFRISSIRDEWIFA--DMELLRKVVVPGIRMSIKLHQDHFTSPDEYDDPTVLYEAIVSHEKNLVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKVNKECVRGLWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHEQLKDILGGPISLGNIRNFIVSTWHRLRKGCGAGCNSGGN 2046 The following BLAST results are available for this feature:
BLAST of TCONS_00006461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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