|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006452 ID=TCONS_00006452|Name=TCONS_00006452|organism=Clytia hemisphaerica|type=transcript|length=13707bp protein sequence of TCONS_00006452-protein >TCONS_00006452-protein ID=TCONS_00006452-protein|Name=TCONS_00006452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=4568bp NGSQSPIQISDDEDEMSYNEKTHGEYHFSIDTTNVEEDTPKPQPELEESTRun BLAST on NCBI transcript from alignment at sc0000067:736436..756186+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006452 ID=TCONS_00006452|Name=TCONS_00006452|organism=Clytia hemisphaerica|type=transcript|length=19751bp|location=Sequence derived from alignment at sc0000067:736436..756186+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:736436..756186+ >TCONS_00006452 ID=TCONS_00006452|Name=TCONS_00006452|organism=Clytia hemisphaerica|type=CDS|length=137040bp|location=Sequence derived from alignment at sc0000067:736436..756186+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006452 vs. Swiss-Prot (Human)
Match: SETX (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4) HSP 1 Score: 275.404 bits (703), Expect = 2.438e-73 Identity = 241/794 (30.35%), Postives = 394/794 (49.62%), Query Frame = 2
Query: 662 DLFHNSILIWDP---VNLEQGRDELEISTSLQSVPVAGGYNSFDEYMKINWPLMLLETWAQLRKEWDEISANRNSRKAWRVESVEEQPNPKASLITCSWFDVVSKESSQSHTCGIHESDLVILY---------------FNDGQCKYFGIVDSVQRRYHSKRRRKAYQLSVLTCKDEKIKHFKXXXXXXXXXXXXYIRQWNAL-IRFQNSLLCKDILKPFRPQTYCHKSDALIQRTDRLMK----LNQDQFQAVSSAVKAV-HTPYSIPKICLIQGPPGTGKSYTIKTIITHLMQTLALAEKKNSSQDKESKARNAKERSRMLICAPSNAAVDEIVKRLLNSPPTMSKSTQSAAKAPTSPQEKKKNCGDFNLLRVG--YYAEPALRRYTLEYLVEQKMKTMKFQHNPDAIQREIKKLNYILDDLDKTCVKLKLSPDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXASATEKFDFYQERKRYTQTLL-FHADIICCTLSGAGSEWMVKAFKDFQKRAAFNCVLVDEAGQCTEPDLLIPLQFGASKLILVGDQNQLPATVLSKKASRYNYGQSLFERIIYSLGEYRETCSDASRGERPAFLLTTQYRMTKEICSYPSKRFYENKLRPAKQ---LASQKPWPLRPYIVLNIQGQELKTSDGSLHNPLEREYVLALCQAIT-SRTSIKPGSIGIITPYKQQKHLLQQRFHQDESLK-PITVNTIDGYQGQEKEVIILSCVRGRNQNNTIGFLSHPQRMNVALTRAKKTLVILAN-QSVQIDDDWKDLFANARERNLLF 2944
D F +L W +N Q + S+ S PV ++++ +Y + +PLM+L T+ + +EW N +R+ + V + P A I F V +E + E+DLV L D + G V +R + + LS+ T ++ + V + +++L T R+ A+ + + L + +L P P +C K D L ++R++ N+DQ +A+ +A V H+P S+ KICLI GPPGTGKS KTI+ L + L ++K S D+ S A+ +++R+L+CAPSNAAVDE++K+++ K K P NCGD NL+R+G + +++L+ V +MK + + A+ + + L+Y LD+L + ++ + +R ++ + + K+ K Q R + TQ+++ + IICCTLS +G + AF+ Q F+CV+VDEAGQ E + L PL +KLILVGD QLP TV+S KA Y Y QS+ R L E E + SR P LT QYRM +IC +PS Y L+ +Q + WP +PY+V ++ + + S N E + V+ + + I R + +IGIIT YK QK ++Q+ ++ K P V+T+D +QG++K+ +I++CVR + +IGFL+ QR+NV +TRAK +L IL + +++ + W L +A++R +
Sbjct: 1699 DTFVKEVLKWKYEMFLNFGQCGPPASLCQSI-SRPVPVRFHNYGDYFNVFFPLMVLNTFETVAQEW----LNSPNRENFYQLQVRKFP---ADYIKYWEFAVYLEECELAKQLYPKENDLVFLAPERINEEKKDTERNDIQDLHEYHSGYVHKFRRTSVMRNGKTECYLSIQTQENFPANLNELVNCIVISSLVTTQRKLKAMSLLGSRNQLARAVLNP-NPMDFCTK-DLLTTTSERIIAYLRDFNEDQKKAIETAYAMVKHSP-SVAKICLIHGPPGTGKS---KTIVGLLYRLLTENQRKGHS-DENSNAK--IKQNRVLVCAPSNAAVDELMKKII----LEFKEKCKDKKNPLG------NCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKK-ELPSHVQAMHKRKEFLDYQLDELSR------------QRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRG-QGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEH-NMISR--LPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAII 2448 The following BLAST results are available for this feature:
BLAST of TCONS_00006452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.