|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006442 ID=TCONS_00006442|Name=TCONS_00006442|organism=Clytia hemisphaerica|type=transcript|length=8261bp protein sequence of TCONS_00006442-protein >TCONS_00006442-protein ID=TCONS_00006442-protein|Name=TCONS_00006442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1187bp SKITIQRRQQCYSSVVTXFSAKLPSNVDNNAIQVLLQLQECISILFHFKRRun BLAST on NCBI transcript from alignment at sc0000067:611757..694167+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006442 ID=TCONS_00006442|Name=TCONS_00006442|organism=Clytia hemisphaerica|type=transcript|length=82411bp|location=Sequence derived from alignment at sc0000067:611757..694167+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:611757..694167+ >TCONS_00006442 ID=TCONS_00006442|Name=TCONS_00006442|organism=Clytia hemisphaerica|type=CDS|length=78408bp|location=Sequence derived from alignment at sc0000067:611757..694167+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006442 vs. Swiss-Prot (Human)
Match: EPG5 (Ectopic P granules protein 5 homolog OS=Homo sapiens GN=EPG5 PE=1 SV=2) HSP 1 Score: 490.345 bits (1261), Expect = 1.730e-139 Identity = 366/1215 (30.12%), Postives = 596/1215 (49.05%), Query Frame = 1
Query: 103 LLQLQECISILFHFKRYGVLEVTFSDDLHSWLDLLVAALHRIGTLPDSFFLLNHLLRCPPSTVSKISNYLQFPSFKTYSLVNKWNSPLVHHFMVMLATLTLPVKSRQEFLRKFEATILKKEEEKTVMVG-RSISWTLVXXXXXXXXXXXXSWSLMTETDLVAVFDQYPFTELLAYLLDMEQNDEGKFCYSPSRTSSYDVISLFAFSSNLITLLSKIFDTYNLLRYRQFLKCVSRIIRLVTQVVSDHWLSYRNYRIDIIGDSTETIPTSQHPTQSQFNLKRLQMQFDQLFLTAAKHILSSHSAGAIQFLSTMPFEAIQSKSMWAVLFL----AVDHKPDLATIIKYA-------GPENVPSVKELDISPN--EGIFLLTALSNMAISRNGIEDRXXXXXXXXXXXXXXXXXRSLKTLYSKNGKDFLDTICTKHSFVVTSLLKYVDQEIEHMRDVMVYIFQLLPLSHWCPTIHDLEKIRTWLLHKAVTSEENQTARILLSNLNYQLTEMEDKLFLPRCYHHLIAIMIVEGYGVSFPDYP-GGIQKLGNKDAGFISQVSKYAVSSFTKLMQSKTHAEYLAWGWDVLLKLKLHESEVTGLDLEQNLEDFLKAVSSQNHSNKTGWCITTLNALWNKKSFEFQIEETPSLINVNIALKSNGLFANYVAFSMTKDSHFVDLLLSKGIRYMTTLKDWYQYEALMHMICNIVPLFLSCPERLFVDSFMQILNKLIHVDVDKAG--------YTDKIWQYFIAGTYSQK---LSALVTAQI-MQGQKHSVGKAQRYLSFWIFLFLKLPRWSRDCGVLFQIDQLCKTAFSVANGFTIIEDTLYDEYKALIKSNESRGMLSSMMGWLSANQLSPN-----PTGDFCYYAFASLRVEKRYEEEIGITNEIAKKLVSNSSMTVEEAFKKCKGSIKARYVPPMPSLTIYRWAEQAMVTPKDHPFLSIIWQQFFLLFLRKPTQESGIPSRTGVGMRFFQSPTLSSLLKDMKNSLRATASYHQEKSTS------GESG-DESNNKTPAKEHQYAKEFHELLSGLFQGFALWLEESRLHDPNLYLDSLPDAYMPDLLMKIFQGNQDIWYEYVSAEVLNSDLTFLASLWQPAQ---HSISTASLEAFSSNQQSSCEERVVKRLSNEGAPRPSPNVRRPESPVKDVTLRVILTQPKLFQEINHDLNXSVTKRATS*ISRQRRHATCNSDATKTFP 3621
L QL+ECIS+LF F R + F DD+ WL LV+ L R+G D FLLNH+LRCP ++Q N V HFM LA L PVK+R EF+ +K E K G S +WTLVDE EEDE E SW L+ E DLV + Q+PF EL +LL + + Y P T +++ +FAF+++L+ LL+ +T+N RYRQF+K + +IR+ VSDHW Y ++ + +Q P +++++LQ++FD+LFL A H+L + G F+S MPF + + +W + +L ++ L++ ++ A PE+ + ++ S N E I LLT + MA +R D + I+ I I E++++ S + +SK G++ L TI H +++ LL V + I+ + V +Y+F+ LPL W P+ ++ IR WLL+ +T +N+ A ++L LN+ + + L L + H +A+M++E Y P GI K +++ + +Y + T Q W W+++L+LKLH+++ G+ Q + + +T + + E+P+ + A+K+ Y+A SMT H ++ ++GI + L ++H++ I+PLF C L + Q L+ L+ +G T K+ Q+ ++ L++++ A I + Q + VG L FW+ + W R+ +LF +D LCK AF + I+ LY ++K + + R +LSS++ W+ A ++P+ T ++A+ L +E +EE+ + I +LV NS+ T ++A KK + +K VP + L IYRWA QA+VTP DHP L +IWQ+FFLL+L +P + G+P +G RFFQSP +LLK+MK L A +H S + G G ES++ TP + + E H+ L LF + LWLE+ + Y+ SLP Y L K+ Q QD+W EY++ E + + LW A+ HS + +ERV+ L AP+P + + PV ++ V+L+Q Q + DLN + ++A + R+ + + + T P
Sbjct: 429 LCQLKECISVLFMFTRRVNEDTQFHDDILLWLQKLVSVLQRVGCPGDHLFLLNHILRCPAGVSKWAVPFIQIKVLH--------NPSGVFHFMQSLALLMSPVKNRAEFM-----CHMKPSERKPSSSGPGSGTWTLVDEGGEEDEDPETSWILLNEDDLVTILAQFPFHELFQHLLGFKAKGD----YLPETTRPQEMMKIFAFANSLVELLAVGLETFNRARYRQFVKRIGYMIRMTLGYVSDHWAQYVSH--------NQGSGLAQQP----YSMEKLQVEFDELFLRAVLHVLKAKRLGIWLFMSEMPFGTLSVQMLWKLFYLMHQVESENLQQLSSSLQPAQCKQQLQDPEHFTNFEKCLSSMNSSEEICLLTTFAQMAQARRTNVDEDFIKIIVLEIYEVSYVTLSTRETFSKVGRELLGTITAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLYLWQPSASEIAVIRDWLLNYNLTVVKNKLACVILEGLNWGFAK-QATLHLDQAVHAEVALMVLEAYQKYLAQKPYAGILSESMKQVSYLASIVRYGETPETSFNQ---------WAWNLILRLKLHKNDY-GI---------------QPNCPAVPFSVTVPD-----------MTESPTFHPLLKAVKAGMPIGCYLALSMTAVGHSIEKFCAEGIPLLGILVQSRHLRTVVHVLDKILPLFYPCQYYLLKNE--QFLSHLLLFLHLDSGVPQGVTQQVTHKVAQHLTGASHGDNVKLLNSMIQAHISVSTQPNEVGPV-AVLEFWVQALISQHLWYREQPILFLMDHLCKAAFQLMQE-DCIQKLLYQQHKNALGYHCDRSLLSSLVSWIVAGNITPSFVEGLATPTQVWFAWTVLNMESIFEEDSQLRRVIEGELVINSAFTPDQALKKAQTQLKLPIVPSLQRLLIYRWAHQALVTPSDHPLLPLIWQKFFLLYLHRPGPQYGLPIDGCIGRRFFQSPAHINLLKEMKRRLTEVADFHHAASKALRVPAEGSEGLPESHSGTPG--YLTSPELHKELVRLFNVYILWLEDENFQKGDTYIPSLPKHYDIHRLAKVMQNQQDLWMEYLNMERIYHEFQETVGLWTQAKLESHSTPCSLSVQLDFTDPLLAKERVLSNLRKHEAPQPPLALHPTKPPVPVISSAVLLSQKDATQLVCTDLNL-LQQQARTAALRESQQVALDGELLDTMP 1570 HSP 2 Score: 288.886 bits (738), Expect = 9.130e-78 Identity = 261/1106 (23.60%), Postives = 499/1106 (45.12%), Query Frame = 2
Query: 3536 RPSPNVRRPESPVKDVTLRVILTQPKLFQEINHDLNRIVEYAKRSSSLQASHVGLDNEYLEMLPDLYETVTVRLTVHIPCDGSKHKTGCKAPAVVTVKFDXXXXXXXXXXXXXDNRSAFDQLVQNAREAFPFDLCVSTVNIENIIEKLSQVFQTIDAQRRNDLQQSARKLFYLLAELINDDVKRCYPAIQFFSSGVEVLGKAYIADKGSEQMPLLETTLTHTSSVMFLAPHFSPMCTSNEEFVELYSKVISYIPQNIDTVIFVLLSKFEILNWLNHQTPTKPIISSLLTHTMKAIGLIGRAPDSEGFVILEVLRNHLNTLLRSDLDTNYWVIFTELLTLSSQANVSTLCWSDFLSAFDF-------------EEEINSNSTCRISIDRVKESLYYMGCYFQNV-CESLNHELEALYKIWEPYTKQLVILLKNLFYHSI---IHSFRHRAGRTKETVLRELWENIVSVFKPWII-----PQSSGKVWTLLRVESIIL--LVQTFTDTIRLVVDC------SSENNEIYCFILNDLLSFYGAEIARFVIEEQSIEIFHTSLSMLPWQNYCPTVQEMTYTIQI-YNTDRNTFKFYASVLLDVDWENVGVTYLNSGNNSLVSQFHQLLLHNILMFTTSSYLANKCKVKLCTMLVAIKNFRWNTLILEDTGRVCQWYSQNMDSALILEKESIVWRTLDFLKQVCGFFYLEGLVTD-----DIVITKRNIYIQVMTTLITRCSSQKKQVSEFQWVMKQLLSDIESTVGYNSTNPMYELITHCS------NCLSLQNHIAQGPIAIAIKSSIDSHLLSTSCAMMVLACISSASRCLANLADMVSLLEQAISCHFVRLNDAELRNAWTPIMQAFVIPELSKEDFVAEAIKQNALLTLYSYNLHRMNNLRTQAEHLDIMVDCVTWCSK--PQLDKDSEAKLLLLWLQTFDIVRTQAAQKQLSNEHWKSIAKYMMFLVASTHVQGEDKYYSGVLGMVGIGRRSDLSKEFRLAAKALHLFLTCQLPSSLIPIRNGPDSPGAIRNAQNKNSRPTSEAEKAYTAFQGLVKNKTYQPMRREIEWVIQFVSKPETNINDGCTLLAYLAQQFFFKNNFIGAI 6721
+P + + PV ++ V+L+Q Q + DLN + + A+ ++ ++ V LD E L+ +P Y + T+H+ C GS K C+ AVVTV+F+ + E + + L R QL A + ++ + V+ EN+I L ++ Q +Q+ LF+ + + ++D+ +R P QFF+S +E+LG+ +I+ SE +LET L ++ L+P F+P + EF++LY +V+ ++ ++ +IF+LL+KF++ WL+ P + LL A+ G PD + + + H LL Y I L+ S++ +S CW L A + S+S +S +V E++ ++ +F + ++ + L+ W PY + L L I + +++TVL+ L I+ +FKPWI+ S + + L ++++ +VQ FTD I + + + ++ +++ + ++ F+ + FH++ LPW++ P M ++ + ++ F F SVL +V+W +V NS + LL +++ L ++ L ++L + W+ + + V ++S + ++IL KES + LK G + TD D V + Q++ L T + K ++ + M +LL DI + +N + M H + L + N+ A P A ++ SI + + ++VL +++A + LA++ M E I+ +F + + + W PI+ + +PEL+ E+F+ E + + LTLY Y L +N+ +T + +++ W + P + EAKL L W Q + Q Q + +S+ + ++ + + ++ E++ SG+LG +G GR+S LS FR+ A+++ FL+ Q+P IR T +A++A A + + +K Y + +I QF+ P + DG + LA L + + +++ I
Sbjct: 1507 QPPLALHPTKPPVPVISSAVLLSQKDATQLVCTDLNLLQQQARTAALRESQQVALDGELLDTMPKQYVNREEQTTLHLECRGSSGKK-CQGAAVVTVQFEGMHKNEAISQQLHVLRKEVKQLQAEAAKPPSLNIVEAAVHAENLITALVNAYKL---QPTPGIQKVGISLFFTIVDYVSDETQRHPPTRQFFTSCIEILGQVFISGIKSECRKVLETILKNSRLCSLLSPFFTPNA-APAEFIQLYEQVVKFLSEDNSDMIFMLLTKFDLKQWLSATKPPLSDRTRLLESIHLALTAWGLEPDEDILMPFNLFCKHWTYLLLYQFPDQYSDILRLLMQSSAEQLLSPECWKATLRALGCCAPSCQQGAASTEGAVLPSSSDALLSDKQVMETIQWLSDFFYKLRLSKMDFKSFGLFSKWSPYMADVKTFLGYLVKRLIDLEMTCLAQDPTASRKTVLKSLHSVIIQLFKPWILVLEDNESSQQRHYPWLESDTVVASSIVQLFTDCIDSLHESFKDKLLPGDAGALWLHLMHYCEACTAPKMPEFI-----LYAFHSTYRKLPWKDLHPDQMLMEAFFKVERGSPKSCFLFLGSVLCEVNWVSVLSDAWNSSPHPETRSMIVCLLFMMILLAKEVQLVDQTDSPLLSLLGQTSSLSWHLVDIVSYQSVLSYFSSHYPPSIILAKESYAELIMKLLKVSAGL----SIPTDSQKHLDAVPKCQAFTHQMVQFLSTLEQNGKITLAVLEQEMSKLLDDI---IVFNPPD-MDSQTRHMALSSLFMEVLMMMNN-ATIPTAEFLRGSIRTWIGQKMHGLVVLPLLTAACQSLASVRHMAETTEACITAYF-KESPLNQNSGWGPILVSLQVPELTMEEFLQECLTLGSYLTLYVYLLQCLNSEQTLRNEMKVLLILSKWLEQVYPS-SVEEEAKLFLWWHQVLQLSLIQTEQN--DSVLTESVIRILLLVQSRQNLVAEERLSSGILGAIGFGRKSPLSNRFRVVARSMAAFLSVQVPME-----------DQIRLRPGSELHLTPKAQQALNALESMASSKQYVEYQDQILQATQFIRHPGHCLQDGKSFLALLVNCLYPEVHYLDHI 2578 The following BLAST results are available for this feature:
BLAST of TCONS_00006442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.