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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006440 ID=TCONS_00006440|Name=TCONS_00006440|organism=Clytia hemisphaerica|type=transcript|length=1798bpRun BLAST on NCBI transcript from alignment at sc0000067:611757..638713+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006440 ID=TCONS_00006440|Name=TCONS_00006440|organism=Clytia hemisphaerica|type=transcript|length=26957bp|location=Sequence derived from alignment at sc0000067:611757..638713+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006440 vs. Swiss-Prot (Human)
Match: EPG5 (Ectopic P granules protein 5 homolog OS=Homo sapiens GN=EPG5 PE=1 SV=2) HSP 1 Score: 252.292 bits (643), Expect = 6.899e-71 Identity = 186/580 (32.07%), Postives = 296/580 (51.03%), Query Frame = 1
Query: 103 LLQLQECISILFHFKRYGVLEVTFSDDLHSWLDLLVAALHRIGTLPDSFFLLNHLLRCPPSTVSKISNYLQFPSFKTYSLVNKWNSPLVHHFMVMLATLTLPVKSRQEFLRKFEATILKKEEEKTVMVG-RSISWTLVXXXXXXXXXXXXSWSLMTETDLVAVFDQYPFTELLAYLLDMEQNDEGKFCYSPSRTSSYDVISLFAFSSNLITLLSKIFDTYNLLRYRQFLKCVSRIIRLVTQVVSDHWLSYRNYRIDIIGDSTETIPTSQHPTQSQFNLKRLQMQFDQLFLTAAKHILSSHSAGAIQFLSTMPFEAIQSKSMWAVLFL----AVDHKPDLATIIKYA-------GPENVPSVKEL--DISPNEGIFLLTALSNMAISRNGIEDRXXXXXXXXXXXXXXXXXRSLKTLYSKNGKDFLDTICTKHSFVVTSLLKYVDQEIEHMRDVMVYIFQLLPLSHWCPTIHDLEKIRTWLLHKAVTSEENQTARILLSNLNYQLTEMEDKLFLPRCYHHLIAIMIVEGYGVSFPDYP-GGIQKLGNKDAGFISQVSKYAVSSFTKLMQSKTHAEYLAWGW 1797
L QL+ECIS+LF F R + F DD+ WL LV+ L R+G D FLLNH+LRCP ++Q N V HFM LA L PVK+R EF+ +K E K G S +WTLVDE EEDE E SW L+ E DLV + Q+PF EL +LL + K Y P T +++ +FAF+++L+ LL+ +T+N RYRQF+K + +IR+ VSDHW Y ++ + +Q P +++++LQ++FD+LFL A H+L + G F+S MPF + + +W + +L ++ L++ ++ A PE+ + ++ ++ +E I LLT + MA +R D + I+ I I E++++ S + +SK G++ L TI H +++ LL V + I+ + V +Y+F+ LPL W P+ ++ IR WLL+ +T +N+ A ++L LN+ + + L L + H +A+M++E Y P GI K +++ + +Y + T Q W W
Sbjct: 429 LCQLKECISVLFMFTRRVNEDTQFHDDILLWLQKLVSVLQRVGCPGDHLFLLNHILRCPAGVSKWAVPFIQIKVLH--------NPSGVFHFMQSLALLMSPVKNRAEFM-----CHMKPSERKPSSSGPGSGTWTLVDEGGEEDEDPETSWILLNEDDLVTILAQFPFHELFQHLLGF----KAKGDYLPETTRPQEMMKIFAFANSLVELLAVGLETFNRARYRQFVKRIGYMIRMTLGYVSDHWAQYVSH--------NQGSGLAQQP----YSMEKLQVEFDELFLRAVLHVLKAKRLGIWLFMSEMPFGTLSVQMLWKLFYLMHQVESENLQQLSSSLQPAQCKQQLQDPEHFTNFEKCLSSMNSSEEICLLTTFAQMAQARRTNVDEDFIKIIVLEIYEVSYVTLSTRETFSKVGRELLGTITAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLYLWQPSASEIAVIRDWLLNYNLTVVKNKLACVILEGLNWGFAK-QATLHLDQAVHAEVALMVLEAYQKYLAQKPYAGILSESMKQVSYLASIVRYGETPETSFNQ---------WAW 969 The following BLAST results are available for this feature:
BLAST of TCONS_00006440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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