TCONS_00006439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006439
Unique NameTCONS_00006439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006439 ID=TCONS_00006439|Name=TCONS_00006439|organism=Clytia hemisphaerica|type=transcript|length=1227bp
atttagatgtgaaaaaatgtaaaataagtAGCAGTTACTGAGATGGCTGA
ATGTGTAAGAGAGCGCCCTAaagcaaagaagaaaaaagcaacaaatatac
aaaaaaatgaGTCAAAAGTTACTCCTAAAACAGGTGGCAGCCAACCagaa
aattcctttgttttaCAAGACACAGAAATTGCTTCTacaactgaaaaagt
tgaaatcaaaaacaaagaaaatgggTCAGAAAACAAGGCAAAAAGTGAAC
CAGTAGCTTCTTTGGATACATCAAAGAAACTTACTAGAATAGAAGACAAG
CAGGAGATTGCCTCCTCTGAAGGagagaatgaaaataaagaaatcaacaa
aacagAAACAGAAGAGGGTGAAGCAGGTCTTCTCAATACAGAGAGTGTTG
CTGTACAATCTCGTTTGCTTCCTGCAACTGATTTTCATTCTGATCTACCA
GAAGAAAATGATGATAACCTGACAAAAAATGAACCTGAATCAGTGGAAGC
TTCTGCACCTTTTCCTTCTTTAGAAGTAACACAAGAAGATGACTCCTTAG
ATATTCAACCAAAAGAACAAGCAGTTAACCAGTCAACTATTATATCACCC
TATGCCGAGTCCACAGCTCCACCACCCTCTCTAGAACCTGTGGAACTCCA
AATTACTGGTGCCATTGCAACTGCACCACCCCCTTCAATAGAACTGGAAT
CTGAAAATACACTTGTCCAAGATGATATAGTAATGCCACAGAGTGTTAGA
CCAAGATCTCAGGTAATGACATCAAGAGAAAGTTTACAGCAACCCTTGGT
GGAACCAATTATAGAAACAATGGAAGCATTCTCAGAGTATCAAATGAAAC
ATTTCTATCACAATCAAGAATTAGAGCAGATTGACTATTTTGTTGATGAG
TTTTTAAAGAATTCTCAAAAAGAGCAACATGAGTTTTTCGAATTGATCCA
GTTCTATTACAAATCAAGAAGACGTCTCGGTGAAATTCTTGATAAAGTTG
AGGGGTTGCAAAGTgaactgaaaaagaagaaagatgacACCTGGGTTATC
AAGCAAAATGTTTACAAAGCAGAAGGAACATGCAGCTGCGGAGTAAAAGT
TTctcagcagcaaaaatatcagcaagcattcttccaagaagaagTTAAAA
AATCGATGTCAAGTGAATTGTATACAATACGCGGCATTGCTCATGAGACA
TTGCCTTTGGAACTGTACAACAGCCNA
Run BLAST on NCBI

transcript from alignment at sc0000067:608097..611539+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006439 ID=TCONS_00006439|Name=TCONS_00006439|organism=Clytia hemisphaerica|type=transcript|length=3443bp|location=Sequence derived from alignment at sc0000067:608097..611539+ (Clytia hemisphaerica)
atttagatgtgaaaaaatgtaaaataagtAGCAGTTACTGAGATGGCTGA
ATGTGTAAGAGAGCGCCCTAaagcaaagaagaaaaaagcaacaaatatac
aaaaaaatgaGTCAAAAGTTACTCCTAAAACAGGTaacattttttctatt
tttttctttattgtgtTGACAATCTGTCTGTCTTCAGCAACCAAATCTCA
TTTAATAATCATCAACTTTAAAGGTATTTACACGAATTATTACTATTTAA
TCTAGCACTATTTATTAGTATTGTTTCTaataaaaatttcattctttaaa
ttttttttaaagacaagGACTAAGTCGTACAACTTATATATGcataaatg
tataattttatattttatttgctTCTTTAAGGTGGCAGCCAACCagaaaa
ttcctttgttttaCAAGACACAGAAATTGCTTCTacaactgaaaaagttg
aaatcaaaaacaaagaaaatgggTCAGAAAACAAGGCAAAAAGTGAACCA
GTAGCTTCTTTGGATACATCAAAGAAACTTACTAGAATAGAAGACAAGCA
GGAGATTGCCTCCTCTGAAGGagagaatgaaaataaagaaatcaacaaaa
cagAAACAGAAGAGGGTGAAGCAGGTCTTCTCAATACAGAGAGTGTTGCT
GTACAATCTCGTTTGCTTCCTGCAACTGATTTTCATTCTGATCTACCAGA
AGAAAATGATGATAACCTGACAAAAAATGAACCTGAATCAGTGGAAGCTT
CTGCACCTTTTCCTTCTTTAGAAGTAACACAAGAAGATGACTCCTTAGAT
ATTCAACCAAAAGAACAAGCAGTTAACCAGTCAACTATTATATCACCCTA
TGCCGAGTCCACAGCTCCACCACCCTCTCTAGAACCTGTGGAACTCCAAA
TTACTGGTGCCATTGCAACTGCACCACCCCCTTCAATAGAACTGGAATCT
GAAAATACACTTGTCCAAGATGATATAGTAATGCCACAGAGTGTTAGACC
AAGATCTCAGGTAATGACATCAAGAGAAAGTTTACAGCAACCCTTGGTGG
AACCAATTATAGAAACAATGGAAGCATTCTCAGAGTATCAAATGAAACAT
TTCTATCACAATCAAGAATTAGAGCAGATTGACTATTTTGTTGATGAGTT
TTTAAAGGTAAGaatttatctttattttcagCAATTATACAGtatagctc
taaagctctaaaagagCATCTAGTAAGATGAAAATCAGAATGCAGATCTT
CAAGggaaatcaaaactataaagagcACTCACGAACATCAATTAGTCATA
TGaaacaaaattaataatggCACTATCGTCAATTTACGAGGCAGGGTTAA
ATGACCAGCAacttaaaataaatgaaaaaaagtcaCTGTCACTATCAACC
AAACTGAACAATACTATGGTTGATAACAGTGTTGAAATCTTATTATTCTA
GAATTCTCAAAAAGAGCAACATGAGTTTTTCGAATTGATCCAGTTCTATT
ACAAATCAAGAAGACGTCTCGGTGAAATTCTTGATAAAGTTGAGGTAAGC
TcagtattttgatttttttgattgttgtaaattattttaaagtttcTATA
CTTCTCTCATCAACACCTGTAATATTATGTCTGTTGATTTCTTTAGCCTC
TTTTTTGTTTGTCCCATCCAAACTATTTCATTACAAAGCCTTCCTTTTAT
TCCTTAGGGGTTGCAAAGTgaactgaaaaagaagaaagatgacACCTGGG
TTATCAAGCAAAATGTTTACAAAGCAGAAGTAGGAAATAAACATCTATTT
CATTCTTTAATTGTTTTATTGGTGGGAAAATGCGTGCAGTGTTTTGAAAA
TCTGGAAGTAtctaaaaagtttgattaaacatgcatcattttttcataat
tagTGCATTAAGATTAGTAACCTATTTATCTGCTAAGTGAATGACAAACT
TCTATTTAGGAAGTTTTTGAAAACTACTCACAGTTATCAAACACAAGTGA
AATACAATCAACAAAAACTAACAATAACTTTTAATCTTTTTCAGGGAACA
TGCAGCTGCGGAGTAAAAGTTTctcagcagcaaaaatatcagcaagcatt
cttccaagaagaagTTAAAAAATCGATGTCAAGTGAATTGTATACAATAC
GCGGCATTGCTCATGAGGTTTGAATGGTTTTTTAGGGggctttttaattt
tgaaatagcaCTATGTGTGACAATCCTTAANTTTTTTTAGGGggctttta
aattttgaaatagcgCTATGTGTGACAATCCTTAAATCTGAAGTGAATTA
AAGAATTTTGTACTTCTAATGCTATTTGCACGGTTCACTAGGAATGTTCG
AATCTGTGAGAAACAGTGGCCCTGTGGtagcatttttcaaatttgaatga
TATCTTTATAATGATGGTTCATATGAAAATAAATGCAAGTCATCCTGTAG
TGTAGTATGAGCTTTTTAATAAACATGTTCTATCACTAATAAATCGTTTT
AATATAACTTNctttgatttttttgattgttataaattattttaaagttt
cTCTGCTTCTCTCATCAGCACCTGTAATATTATGTCTGTTGATTTCTTTA
GCCTCTTTTTTGTTTGTCCCATCCAAACTATTTCATTACAAAGCCTTCCT
TTTATTCCTTAGGGGTTGCAAAGTgaactgaaaaagaagaaagatgacAC
CTGGGTTATCAAGCAAAATGTTTACAAAGCAGAAGTAGGAAATAAACATC
TATTTCATTCTTTAATTGTTTTATTGGTGGGAAAATGCGTGCAGTGTTTT
GAAAATCTGGAAGTAtctaaaaagtttgattaaacatgcatcattttttc
ataattagTGCATTAAGATTAGTAACCTATTTATCTGCTAAGTGAATGAC
AAACTTCTATTTAGGAAGTTTTTGAAAACTACTCACAGTTATCAAACACA
AGTGAAATACAATCAACAAAAACTAACAATAACTTTTAATCTTTTTCAGG
GAACATGCAGCTGCGGAGTAAAAGTTTctcagcagcaaaaatatcagcaa
gcattcttccaagaagaagTTAAAAAATCGATGTCAAGTGAATTGTATAC
AATACGCGGCATTGCTCATGAGGTTTGAATGGTTTTTTAGGGggcttttt
aattttgaaatagcaCTATGTGTGACAATCCTTAAATCTGAAGTGAATTA
AAGAATTTTGTACTTCTAATGCTATTTGCACGGTTCACTAGAAATGTTCG
AATCTGTGAGAAACAGTGGCCCTGTGGtagcatttttcaaatttgaatga
TATCTTTATAATGATGGCTCATATGAAAATAAATGCAAGTCATCCTGTAG
TGTAGTATGAGCTTTTTAATAAACATGTTCTATCACTAATAAATCGTTTT
AATATAACTTTAGACATTGCCTTTGGAACTGTACAACAGCCNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003672XLOC_003672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006439-exon-sc0000067-1491911889:608097..608229TCONS_00006439-exon-sc0000067-1491911889:608097..608229Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1510915933:608097..608229TCONS_00006439-exon-sc0000067-1510915933:608097..608229Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1575043694:608097..608229TCONS_00006439-exon-sc0000067-1575043694:608097..608229Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1491911889:608478..609253TCONS_00006439-exon-sc0000067-1491911889:608478..609253Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1510915933:608478..609253TCONS_00006439-exon-sc0000067-1510915933:608478..609253Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1575043694:608478..609253TCONS_00006439-exon-sc0000067-1575043694:608478..609253Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1491911889:609548..609640TCONS_00006439-exon-sc0000067-1491911889:609548..609640Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1510915933:609548..609640TCONS_00006439-exon-sc0000067-1510915933:609548..609640Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1575043694:609548..609640TCONS_00006439-exon-sc0000067-1575043694:609548..609640Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1491911889:609804..609875TCONS_00006439-exon-sc0000067-1491911889:609804..609875Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1510915933:609804..609875TCONS_00006439-exon-sc0000067-1510915933:609804..609875Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1575043694:609804..609875TCONS_00006439-exon-sc0000067-1575043694:609804..609875Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1491911889:611096..611218TCONS_00006439-exon-sc0000067-1491911889:611096..611218Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1510915933:611096..611218TCONS_00006439-exon-sc0000067-1510915933:611096..611218Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1575043694:611096..611218TCONS_00006439-exon-sc0000067-1575043694:611096..611218Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1491911889:611510..611539TCONS_00006439-exon-sc0000067-1491911889:611510..611539Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1510915933:611510..611539TCONS_00006439-exon-sc0000067-1510915933:611510..611539Clytia hemisphaericaexon
TCONS_00006439-exon-sc0000067-1575043694:611510..611539TCONS_00006439-exon-sc0000067-1575043694:611510..611539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:608097..611539 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.512973	0	0	0	0	1.08902e-07	4.23164e-07	0	0	0	0	0	0	0	2.37368e-07	0	0	0	0	0	5.15738e-06	1.68013e-07	0	0	2.24502e-09	1.10499	0	0.012043
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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