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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006436 ID=TCONS_00006436|Name=TCONS_00006436|organism=Clytia hemisphaerica|type=transcript|length=3015bp
Gttttatattgaaaaatatctatctatctatacaaaatgaattttttaca
agaaatttgttttaatataacaataaataaaaatattttggtctttaGTA
GTTTTTGTGCTGTATACAATCTTCATTTATCAATATTCTATTATAAATTC
ActaaaaattttgactttttccaaaaaaacaaaaatattaatatAGCACA
CAACTTTTTGTTtatcttgttaaaaaaataaaaacaaagcttgACATTCT
TACATaaacaatatttaaaaaatatacagCCTAAAATATTGAGTTTTTCA
CTTTATGGCAGTAATCCCAGCGGCAATGAAAGTCGCCAGGAcgaaaatca
ccaaaaaaactctgaatttttcaaacaaataatATGTAAAGACACTGGTC
CCCTTGATAGCACgtttatgtattttttctttcaaacttcagaaaattat
caatgaaaatttgagaaagaaaaaaatataacacaACAAACTTAATCTTA
AACTATCGTCATCGCAGATTAAGGGTTTTATGACGCATACAAAAGACAAA
AGGGACTTTtgcttttcacaaaaaaatgtaaaaatataaaaaaaattgtc
tctTCATTCATATATTATATCTCTCGTGTGTATCTAGTTTTAAAAACAGC
TAGCTTAAAATCCAAAGTGTAAGCGTAGCCTTAGTCGAGTTTCACCTCCA
TGGATAAGATGCTAAGCTCGAACTTGTAAAGTGTAGGTGCGTTAAAAGGC
GGTTTGCTTGTCTGGCACTAATCAACATCCAATCACAGACCACGAAATCG
CATTGTCATCTGCTCTAATGTTGGGGACTTTTGATCATGATGATCAATCT
CTATTCTAAATCCGCGTATGGGATCCACACTTCTCAAAATCCAATTCCTT
CTCGACCATTCTTCAAGCATTGCTACCAGAGAAGGGTAACTGTTTTGGAC
AATCATGCTCCTTCAGTAAACTTTGTAATTCATCTAATTGTTTCTTGAGA
TCGCGAATTTCTTTCTCCACACGTGTGTTGTCTTCTTCAATTTGTGTTGT
TTCCTggtgaaaagaaaaattgaagaaaattaagaaatttgtcCAATGCT
GGATAATGGATAATTCACCAATATCAATTGCTTACTCAAAATTCATTAAG
TTGCACAattgaacatgtttttgaaacaattttcaaaCAGACATTGTAGA
CAAAAATTATGAGTTCTATATACTTGAAAGGAATATGGcgtaagaaagtt
ttttttgctgatttgtaCAGTTTTTGTTGGCCAAAGATGTTTCCAATGTT
TGCTTTGATAAGCTTTACGTAAGAAGGTCaaataaacttttcaaaacgGG
AAATTTTCAACGGTTATTTTAGCCAAAGTGATTTTTTGAATCTTCAGTCA
TATTCAATGcccgaaaaaaagtttgaaatcaaCTTTTAAAATAACAATTA
GGGCGTCCCTTTATATCTTATGTGGTTTCACGCAGTACTTGAGGTCAATT
AACCACAAATCTCAAATAAGTAAGCAGTGTATTTCTTATGCCATATTCCC
TTCTGATATAAAAAGCCAAATTTCACCGGATtagaaaagatttcaaagtt
tcGTTTCCGACGTCTGATAATAGGGAAACGGTAGTAAGAAAATGACGTAA
TTTACCTGCTCTAGAGCGTCGATTCGTTCACGTCTTCGTGTGCGGCAACG
TAAAGCTGCTTGCTTGTTGCGTTCACGTCGGACACGTCGTTTCTCGAGTT
CTTCGTGTGAAAGCTgaacaaaatgaaagaaaatacttaatattaaaatt
tagattttccTATTTTCCCTTATCAAATATGAGATTCAATCTTTTGagta
gagaatttttttttgctgtgtTCAGCTTTTTGAAGGAATGAATCATCACA
TAAACTGTTtcgaaaaacaacaacaaaattttctGTTTGTCAAAAGTCGT
GACAATCAAAACCATATGTATTTGAAATCAtatgaataacaaaaaaatcg
agaaattgTTCTTACCTCTTCATCACGCTTTCGGCGTTTCATGCCATATT
CGTTATAGTAGTATGCATATTCGCTGGCCGGTTGAGCAACTGGACGGGGT
CCGTATCCGGGAGCCGCCATCATCGGGTGTTGCTGCATACGGTAACGCAT
CATAAGATCTTCTTGACTGAAATGTTGTTGTGGTGAATTGAGAGGAGATG
CGGAGTAGGTGGAAGAGTTGCCGGGTGAATGTGCGTAAGTGTTCATGGGT
GAAGGCGACGCCATTGATTGGATAGCCGAGACTGGTGAGTAAGGGTTGTA
TGGTCGGCATAGGATCGGCATATTCATTGATGGTGATGCGAGCATTGATG
GATTGTTTTGATGTGCCtgtaaagagaaagaaaaatatattatttGTTTA
ATGTTCATTCCTTGTCCGCGTCAAGCATGCCTATTGATGCCTGTCTTGAT
CAAATTTGTGTCTGTATACACGAAACTAGAATATATGATGTTTTTCCGAA
TTCAAAGAAATAGTGATGTTGATAACAAATCAAAGTGCTGACAAGGACAA
AAATGacattgataaatttttaataCAAATCGCAACATGATATGAAGAGA
GAGGTGATAGCAATTAAGTCGGCTaattaaaagttgaaaaccTATAATTT
TGTATCAAATTAAAGTTTATAATTCTTTtcgaaatgaaaataataacata
gAGGTGTGAAAACGAAAATAGCGTGATCAGCAAATCCGAAATCAATTAAC
GTGTTAGTTAAAGATAAATACTTAAGTGCCGCATAAGCAATTCCGTAAAA
AGGTAATCTCAAAAGATTTCACTACCTCAACGGGTGAGGCGTCGGTCGGC
GACATATCCCAATGTCGGAGCCGACTTGTGCTCGGGCCTGCCGAGGATAA
ATCGAGCGTAAAACGCGAGCGGTCGTAAGGGTTCGTTGAGGATGAAGATG
AACTCTCTCCGCGATTAGCCATGTTCGAATTCATTATAATCCCGACTGCC
ATTATGAATCAAAAA Run BLAST on NCBI transcript from alignment at sc0000067:555496..558828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006436 ID=TCONS_00006436|Name=TCONS_00006436|organism=Clytia hemisphaerica|type=transcript|length=3333bp|location=Sequence derived from alignment at sc0000067:555496..558828+ (Clytia hemisphaerica)
Gttttatattgaaaaatatctatctatctatacaaaatgaattttttaca
agaaatttgttttaatataacaataaataaaaatattttggtctttaGTA
GTTTTTGTGCTGTATACAATCTTCATTTATCAATATTCTATTATAAATTC
ActaaaaattttgactttttccaaaaaaacaaaaatattaatatAGCACA
CAACTTTTTGTTtatcttgttaaaaaaataaaaacaaagcttgACATTCT
TACATaaacaatatttaaaaaatatacagCCTAAAATATTGAGTTTTTCA
CTTTATGGCAGTAATCCCAGCGGCAATGAAAGTCGCCAGGAcgaaaatca
ccaaaaaaactctgaatttttcaaacaaataatATGTAAAGACACTGGTC
CCCTTGATAGCACgtttatgtattttttctttcaaacttcagaaaattat
caatgaaaatttgagaaagaaaaaaatataacacaACAAACTTAATCTTA
AACTATCGTCATCGCAGATTAAGGGTTTTATGACGCATACAAAAGACAAA
AGGGACTTTtgcttttcacaaaaaaatgtaaaaatataaaaaaaattgtc
tctTCATTCATATATTATATCTCTCGTGTGTATCTAGTTTTAAAAACAGC
TAGCTTAAAATCCAAAGTGTAAGCGTAGCCTTAGTCGAGTTTCACCTCCA
TGGATAAGATGCTAAGCTCGAACTTGTAAAGTGTAGGTGCGTTAAAAGGC
GGTTTGCTTGTCTGGCACTAATCAACATCCAATCACAGACCACGAAATCG
CATTGTCATCTGCTCTAATGTTGAGGAGTGATGATCGATCTCTATTCTAA
ATCCGCGTATGGGATCCACACTTCTCAAAATCCAATTCCTTCTCGACCAT
TCTTCAAGCATTGCTACCAGAGAAGGGTAACTGTTTTGGACAATCATGCT
CCTTCAGTAAACTTTGTAATTCATCTAATTGTTTCTTGAGATCACGAATT
TCTTTCTCCACACGTGTGTTGTCTTCTTCAATTTGTGTTGTTTCCTggtg
aaaagaaaaattgaagaaaattaagaaaGTTGTCCAATGCTGGATAATGG
ATAATTCACCAATATCAATTGCNACATCTGCTCTAATGTTGGGGACTTTT
GATCATGATGATCAATCTCTATTCTAAATCCGCGTATGGGATCCACACTT
CTCAAAATCCAATTCCTTCTCGACCATTCTTCAAGCATTGCTACCAGAGA
AGGGTAACTGTTTTGGACAATCATGCTCCTTCAGTAAACTTTGTAATTCA
TCTAATTGTTTCTTGAGATCGCGAATTTCTTTCTCCACACGTGTGTTGTC
TTCTTCAATTTGTGTTGTTTCCTggtgaaaagaaaaattgaagaaaatta
agaaatttgtcCAATGCTGGATAATGGATAATTCACCAATATCAATTGCT
TACTCAAAATTCATTAAGTTGCACAattgaacatgtttttgaaacaattt
tcaaaCAGACATTGTAGACAAAAATTATGAGTTCTATATACTTGAAAGGA
ATATGGcgtaagaaagttttttttgctgatttgtaCAGTTTTTGTTGGCC
AAAGATGTTTCCAATGTTTGCTTTGATAAGCTTTACGTAAGAAGGTCaaa
taaacttttcaaaacgGGAAATTTTCAACGGTTATTTTAGCCAAAGTGAT
TTTTTGAATCTTCAGTCATATTCAATGcccgaaaaaaagtttgaaatcaa
CTTTTAAAATAACAATTAGGGCGTCCCTTTATATCTTATGTGGTTTCACG
CAGTACTTGAGGTCAATTAACCACAAATCTCAAATAAGTAAGCAGTGTAT
TTCTTATGCCATATTCCCTTCTGATATAAAAAGCCAAATTTCACCGGATt
agaaaagatttcaaagtttcGTTTCCGACGTCTGATAATAGGGAAACGGT
AGTAAGAAAATGACGTAATTTACCTGCTCTAGAGCGTCGATTCGTTCACG
TCTTCGTGTGCGGCAACGTAAAGCTGCTTGCTTGTTGCGTTCACGTCGGA
CACGTCGTTTCTCGAGTTCTTCGTGTGAAAGCTgaacaaaatgaaagaaa
atacttaatattaaaatttagattttccTATTTTCCCTTATCAAATATGA
GATTCAATCTTTTGagtagagaatttttttttgctgtgtTCAGCTTTTTG
AAGGAATGAATCATCACATAAACTGTTtcgaaaaacaacaacaaaatttt
ctGTTTGTCAAAAGTCGTGACAATCAAAACCATATGTATTTGAAATCAta
tgaataacaaaaaaatcgagaaattgTTCTTACCTCTTCATCACGCTTTC
GGCGTTTCATGCCATATTCGTTATAGTAGTATGCATATTCGCTGGCCGGT
TGAGCAACTGGACGGGGTCCGTATCCGGGAGCCGCCATCATCGGGTGTTG
CTGCATACGGTAACGCATCATAAGATCTTCTTGACTGAAATGTTGTTGTG
GTGAATTGAGAGGAGATGCGGAGTAGGTGGAAGAGTTGCCGGGTGAATGT
GCGTAAGTGTTCATGGGTGAAGGCGACGCCATTGATTGGATAGCCGAGAC
TGGTGAGTAAGGGTTGTATGGTCGGCATAGGATCGGCATATTCATTGATG
GTGATGCGAGCATTGATGGATTGTTTTGATGTGCCtgtaaagagaaagaa
aaatatattatttGTTTAATGTTCATTCCTTGTCCGCGTCAAGCATGCCT
ATTGATGCCTGTCTTGATCAAATTTGTGTCTGTATACACGAAACTAGAAT
ATATGATGTTTTTCCGAATTCAAAGAAATAGTGATGTTGATAACAAATCA
AAGTGCTGACAAGGACAAAAATGacattgataaatttttaataCAAATCG
CAACATGATATGAAGAGAGAGGTGATAGCAATTAAGTCGGCTaattaaaa
gttgaaaaccTATAATTTTGTATCAAATTAAAGTTTATAATTCTTTtcga
aatgaaaataataacatagAGGTGTGAAAACGAAAATAGCGTGATCAGCA
AATCCGAAATCAATTAACGTGTTAGTTAAAGATAAATACTTAAGTGCCGC
ATAAGCAATTCCGTAAAAAGGTAATCTCAAAAGATTTCACTACCTCAACG
GGTGAGGCGTCGGTCGGCGACATATCCCAATGTCGGAGCCGACTTGTGCT
CGGGCCTGCCGAGGATAAATCGAGCGTAAAACGCGAGCGGTCGTAAGGGT
TCGTTGAGGATGAAGATGAACTCTCTCCGCGATTAGCCATGTTCGAATTC
ATTATAATCCCGACTGCCATTATGAATCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006436-exon-sc0000067-1491911889:555496..556302 | TCONS_00006436-exon-sc0000067-1491911889:555496..556302 | Clytia hemisphaerica | exon |
| TCONS_00006436-exon-sc0000067-1510915933:555496..556302 | TCONS_00006436-exon-sc0000067-1510915933:555496..556302 | Clytia hemisphaerica | exon |
| TCONS_00006436-exon-sc0000067-1575043694:555496..556302 | TCONS_00006436-exon-sc0000067-1575043694:555496..556302 | Clytia hemisphaerica | exon |
| TCONS_00006436-exon-sc0000067-1491911889:556621..558828 | TCONS_00006436-exon-sc0000067-1491911889:556621..558828 | Clytia hemisphaerica | exon |
| TCONS_00006436-exon-sc0000067-1510915933:556621..558828 | TCONS_00006436-exon-sc0000067-1510915933:556621..558828 | Clytia hemisphaerica | exon |
| TCONS_00006436-exon-sc0000067-1575043694:556621..558828 | TCONS_00006436-exon-sc0000067-1575043694:556621..558828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:555496..558828 + |
Blast
The following BLAST results are available for this feature:
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