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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006435 ID=TCONS_00006435|Name=TCONS_00006435|organism=Clytia hemisphaerica|type=transcript|length=1672bp
AATATATTCAGAGACTATGTAGAGTAGGGTTAGAATCGAATAATCTGTTT
GATAACGTAAACATAGTTGTTTGAGTATTTCGGGTGATGGATGAAGTTTT
TAGAAAATAAGTTTGAAGATGACTTGGGAATAATGTTTATGAATACAACA
TTTTGTCAACGAAGTGATTACGTTTGAGACGACCAAATTTATTTCAAGAT
GTTTGAAACCATCCGTCGCTATACGTTCATCTTTTACATTCTATTTCTCG
GCATCACTCTCACTTTTATGGTGGCCCTCAACTTCACCAAAGATTGGATA
GAAGTCAGTATCAATGAAGAAATAACACTTACACCGAACATCACCAAATT
GTTCGGGTACAATGATACAGCAGCCGACAAAATATCGAAACTGGATATGA
AGAAAACGTTCAGATTCGGGCTGAAAACATTTTGCGTGGAAACGGTGTAT
GAACAGTCAGGAGTTACAGAGAATAGTTGTAAACCAATCTCTATTTTTCA
TAGAGATCTAGAGGAAGCAGCCTTAAAAGAtgcattgaaatttcaaatcc
tGGCATCAGTGTTTGCATGCTTTCCTATCTTAACGACATTCGCATTGCAT
TTCTGCCAAGAAGGTCCTGTGAAGAAAATAGTGTGTTATTTGAGCATTGC
ATTGTTGGTATTTTCTGGAATTTCACTGGCCAGCTGCTGCTACATGGTCG
TCTCAACCATTACAAAGCATTCTGGGATTGTCCGAAATAACATAATGGCG
CATATAGGAAGCGCGCAAATCGAACTGGACACGATCAAAAAGGGATCTGG
GTTTGATATAGCGGTCGCTGCAATGTTTTTCTTGTGTTTGTCATTGATTT
TCTTTGCGTGGAATTTTAACAAAAAGCCTCCGGTgcaaaaacaagaaaat
caaGACTATAGGTTATTGGTTACTGAGTAGTAACAAAAATGCTTGTATAT
GTGACAATACTGAAGAATCGAAAAATGACAACAGTTTGTATATAATGATT
ACGTTGAACATGAAATTTAAACAGTAATAAAAAAGGAAAGCTATCAAAAT
CTTGGCGTTGACATCCCCAGGTAAAATTAGTCggaaaatcgtccccggtg
gaaaatatATCCTAAAATATATCCTAAAATTAGCCTATTCTTTAAAGCCT
ATTATTGGAAATTNAGTCCCCGGCGGAAATATATCCTAAAATATATCCTA
AAATTACCCTATTCTTTAAACCCTATtggaaaattgaatttaaaaatgCA
TTCTAAAACCATCTCCACTTgctttttgagcttaaaacaaTGGATTTTCT
ATCACTATTTGGGAATTTTCGTTGGAAAAGGGAAAAGGTCAAGTCGGTCA
CTTAGTTTCTAGGGGTGTGTATTCAATTACATTAGCATTTAGAAATATTC
CCCCCTTTCATGATCGTTGATGAAAAAGGGGCAATTATGCCTATGGATTA
AATTTTGTGCTAACATGGTActacatttatttatttacagttAGAATAAA
ACATTGTAAAACATTTTGTGTAAAATATTTTGTACAGTGAGATTTGtttg
aaataaattgaaaaaagctaCTCGAAAATTGAATGTAATGGAATCGCTGG
ACTCTAAGGTAGATCACTGCTCCGTGGAGGGGGAgtggggtactagggtt
ggcagaTGAGGAGTATGTGCGg Run BLAST on NCBI protein sequence of TCONS_00006435-protein >TCONS_00006435-protein ID=TCONS_00006435-protein|Name=TCONS_00006435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MFETIRRYTFIFYILFLGITLTFMVALNFTKDWIEVSINEEITLTPNITK
LFGYNDTAADKISKLDMKKTFRFGLKTFCVETVYEQSGVTENSCKPISIF
HRDLEEAALKDALKFQILASVFACFPILTTFALHFCQEGPVKKIVCYLSI
ALLVFSGISLASCCYMVVSTITKHSGIVRNNIMAHIGSAQIELDTIKKGS
GFDIAVAAMFFLCLSLIFFAWNFNKKPPVQKQENQDYRLLVTE Run BLAST on NCBI transcript from alignment at sc0000067:527057..530166+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006435 ID=TCONS_00006435|Name=TCONS_00006435|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at sc0000067:527057..530166+ (Clytia hemisphaerica)
AATATATTCAGAGACTATGTAGAGTAGGGTTAGAATCGAATAATCTGTTT
GATAACGTAAACATAGTTGTTTGAGTATTTCGGGTGATGGATGAAGTTTT
TAGAAAATAAGTTTGAAGATGACTTGGGAATAATGTTTATGAATACAACA
TTTTGTCAACGAAGTGATTACGTTTGAGACGACCAAATTTATTTCAAGGT
AAGAAATCATATTCGATAAGCAAAACAACGAtctaaaatatgaaatatga
cCGGTGGGTAtgacacccctgtttcagtgccccagtgaaactttttccac
gacagggatgaaaatttctatctaaaTGCTATTCTTTCAAGCTTAAAAAA
ACCAGTGGAGTGGGGATGGTTTATGGTGtgcaattttttcaattgaatga
aaaaatagggacgaaatcaaagttaatttgCTAATGGGTATTTTTACCAC
TGGGatgaaattttgatcaaatttataAGTTGGGCGGGGAACCAAACGGG
TCTGTGTCACAGGGGTGCAGTGTGTGTGGTTCCCTGAGGTGATTTTTCGG
TACCCAAAATATACTTTTTCCCATCCTCCCATCCACTAGACTTTCTTCCC
TTatagccttatgttcttatataatttgttgttATAAAAGGCTTCTTCCA
TTTTGTTTAGATGTTTGAAACCATCCGTCGCTATACGTTCATCTTTTACA
TTCTATTTCTCGGCATCACTCTCACTTTTATGGTGGCCCTCAACTTCACC
AAAGATTGGATAGAAGTCAGTATCAATGAAGAAATAACACTTACACCGAA
CATCACCAAATTGTTCGGGTACAATGATACAGCAGCCGACAAAATATCGA
AACTGGATATGAAGAAAACGTTCAGATTCGGGCTGAAAACATTTTGCGTG
GAAACGGTGTATGAACAGTCAGGAGTTACAGAGAATAGTTGTAAACCAAT
CTCTATTTTTCATAGAGATCTAGAGGAAGCAGGTACCAAAGCTATTTTCA
GAATTCGCGACATTAATTAAAATTGTGCTTTTATTGTTTCACAGGAATCT
TTTATTTGGCGAATctttgattcaatttttcaaaactcaggCTAGGGGTT
TAACACTCTTTCCTTGTGTCTATATCAGTAAATGGATGCAGTAAATAAGT
Acttcttgtctcccgaatagacgtctccccccccccgctaattattaaga
gcaaaaaaatccatcccccgcTCTTATTAAGCCCCCCCCCCCCCGCTTAT
TAAATTCGAATAATTCAATATCttattacagtgtagatagaccttaaact
tgttaaaattttcctttttgtaagtatgggttcttattttacgtgttcat
ttgttaaaattgttgttgaaattgatacaagtaaaaaaaaattctgcaat
AAGAAAAAAGAGGTCTAttctgttttttgtttgaagatcaaaagtaaaat
atcactacttgaaatttgaaaagcttCGCCCAGTACTAATATTGTGGAAT
CAATTCCAATCACTTCTCCATTATATCTTTTATTTTCTAGCCTTAAAAGA
tgcattgaaatttcaaatcctGGCATCAGTGTTTGCATGCTTTCCTATCT
TAACGACATTCGCATTGCATTTCTGCCAAGAAGGTCCTGTGAAGAAAATA
GTGTGTTATTTGAGCATTGCATTGTTGGTATTTTCTGGTAAGTATTCTCT
TGTGCAATCATATACGAAATATGTGATGATGAGTTTCTTGTGAAATACAA
TGAATCggtttacgagttccgagattttttcCGTAAGACTTGCCCAAGCC
TATAAGTCGTGCAATAAACATTACTATATTCAATTTAATGATAGAtggag
tcgatattttacgtggagtACACATTGCCATCTAGTCTTTCGTTTAATTT
TACGGGTCTACGGCTAGTCGGCTCGGCTGTCTATGAACTTGGGAAGGAGT
GGATATTCTAGCTGGAACCCCACCCCTGCGTTGGTTCCGTTTTCTATAAA
GACCAAACGTAATAGCATAAGATACCTATATTTAGTTTTATGGCTATAAC
GGTGATATGACAAGATAAGATTCAATCTATTTATGTTTCTTGAATTTAAT
TTTAGGAATTTCACTGGCCAGCTGCTGCTACATGGTCGTCTCAACCATTA
CAAAGCATTCTGGGATTGTCCGAAATAACATAATGGCGCATATAGGAAGC
GCGCAAATCGAACTGGACACGATCAAAAAGGGATCTGGGTTTGATATAGC
GGTCGCTGCAATGTTTTTCTTGTGTTTGTCATTGATTTTCTTTGCGTGGA
ATTTTAACAAAAAGCCTCCGGTgcaaaaacaagaaaatcaaGACTATAGG
TTATTGGTTACTGAGTAGTAACAAAAATGCTTGTATATGTGACAATACTG
AAGAATCGAAAAATGACAACAGTTTGTATATAATGATTACGTTGAACATG
AAATTTAAACAGTAATAAAAAAGGAAAGCTATCAAAATCTTGGCGTTGAC
ATCCCCAGGTAAAATTAGTCggaaaatcgtccccggtggaaaatatATCC
TAAAATATATCCTAAAATTAGCCTATTCTTTAAAGCCTATTATTGGAAAT
TNAGTCCCCGGCGGAAATATATCCTAAAATATATCCTAAAATTACCCTAT
TCTTTAAACCCTATtggaaaattgaatttaaaaatgCATTCTAAAACCAT
CTCCACTTgctttttgagcttaaaacaaTGGATTTTCTATCACTATTTGG
GAATTTTCGTTGGAAAAGGGAAAAGGTCAAGTCGGTCACTTAGTTTCTAG
GGGTGTGTATTCAATTACATTAGCATTTAGAAATATTCCCCCCTTTCATG
ATCGTTGATGAAAAAGGGGCAATTATGCCTATGGATTAAATTTTGTGCTA
ACATGGTActacatttatttatttacagttAGAATAAAACATTGTAAAAC
ATTTTGTGTAAAATATTTTGTACAGTGAGATTTGtttgaaataaattgaa
aaaagctaCTCGAAAATTGAATGTAATGGAATCGCTGGACTCTAAGGTAG
ATCACTGCTCCGTGGAGGGGGAgtggggtactagggttggcagaTGAGGA
GTATGTGCGg Coding sequence (CDS) from alignment at sc0000067:527057..530166+ >TCONS_00006435 ID=TCONS_00006435|Name=TCONS_00006435|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000067:527057..530166+ (Clytia hemisphaerica)
ATGTTTGAAACCATCCGTCGCTATACGTTCATCTTTTACATTCTATTTCT
CGGCATCACTCTCACTTTTATGGTGGCCCTCAACTTCACCAAAGATTGGA
TAGAAGTCAGTATCAATGAAGAAATAACACTTACACCGAACATCACCAAA
TTGTTCGGGTACAATGATACAGCAGCCGACAAAATATCGAAACTGGATAT
GAAGAAAACGTTCAGATTCGGGCTGAAAACATTTTGCGTGGAAACGGTGT
ATGAACAGTCAGGAGTTACAGAGAATAGTTGTAAACCAATCTCTATTTTT
CATAGAGATCTAGAGGAAGCAGCCTTAAAAGAtgcattgaaatttcaaat
cctGGCATCAGTGTTTGCATGCTTTCCTATCTTAACGACATTCGCATTGC
ATTTCTGCCAAGAAGGTCCTGTGAAGAAAATAGTGTGTTATTTGAGCATT
GCATTGTTGGTATTTTCTGGAATTTCACTGGCCAGCTGCTGCTACATGGT
CGTCTCAACCATTACAAAGCATTCTGGGATTGTCCGAAATAACATAATGG
CGCATATAGGAAGCGCGCAAATCGAACTGGACACGATCAAAAAGGGATCT
GGGTTTGATATAGCGGTCGCTGCAATGTTTTTCTTGTGTTTGTCATTGAT
TTTCTTTGCGTGGAATTTTAACAAAAAGCCTCCGGTgcaaaaacaagaaa
atcaaGACTATAGGTTATTGGTTACTGAGTAGATGTTTGAAACCATCCGT
CGCTATACGTTCATCTTTTACATTCTATTTCTCGGCATCACTCTCACTTT
TATGGTGGCCCTCAACTTCACCAAAGATTGGATAGAAGTCAGTATCAATG
AAGAAATAACACTTACACCGAACATCACCAAATTGTTCGGGTACAATGAT
ACAGCAGCCGACAAAATATCGAAACTGGATATGAAGAAAACGTTCAGATT
CGGGCTGAAAACATTTTGCGTGGAAACGGTGTATGAACAGTCAGGAGTTA
CAGAGAATAGTTGTAAACCAATCTCTATTTTTCATAGAGATCTAGAGGAA
GCAGCCTTAAAAGAtgcattgaaatttcaaatcctGGCATCAGTGTTTGC
ATGCTTTCCTATCTTAACGACATTCGCATTGCATTTCTGCCAAGAAGGTC
CTGTGAAGAAAATAGTGTGTTATTTGAGCATTGCATTGTTGGTATTTTCT
GGAATTTCACTGGCCAGCTGCTGCTACATGGTCGTCTCAACCATTACAAA
GCATTCTGGGATTGTCCGAAATAACATAATGGCGCATATAGGAAGCGCGC
AAATCGAACTGGACACGATCAAAAAGGGATCTGGGTTTGATATAGCGGTC
GCTGCAATGTTTTTCTTGTGTTTGTCATTGATTTTCTTTGCGTGGAATTT
TAACAAAAAGCCTCCGGTgcaaaaacaagaaaatcaaGACTATAGGTTAT
TGGTTACTGAGTAGATGTTTGAAACCATCCGTCGCTATACGTTCATCTTT
TACATTCTATTTCTCGGCATCACTCTCACTTTTATGGTGGCCCTCAACTT
CACCAAAGATTGGATAGAAGTCAGTATCAATGAAGAAATAACACTTACAC
CGAACATCACCAAATTGTTCGGGTACAATGATACAGCAGCCGACAAAATA
TCGAAACTGGATATGAAGAAAACGTTCAGATTCGGGCTGAAAACATTTTG
CGTGGAAACGGTGTATGAACAGTCAGGAGTTACAGAGAATAGTTGTAAAC
CAATCTCTATTTTTCATAGAGATCTAGAGGAAGCAGCCTTAAAAGAtgca
ttgaaatttcaaatcctGGCATCAGTGTTTGCATGCTTTCCTATCTTAAC
GACATTCGCATTGCATTTCTGCCAAGAAGGTCCTGTGAAGAAAATAGTGT
GTTATTTGAGCATTGCATTGTTGGTATTTTCTGGAATTTCACTGGCCAGC
TGCTGCTACATGGTCGTCTCAACCATTACAAAGCATTCTGGGATTGTCCG
AAATAACATAATGGCGCATATAGGAAGCGCGCAAATCGAACTGGACACGA
TCAAAAAGGGATCTGGGTTTGATATAGCGGTCGCTGCAATGTTTTTCTTG
TGTTTGTCATTGATTTTCTTTGCGTGGAATTTTAACAAAAAGCCTCCGGT
gcaaaaacaagaaaatcaaGACTATAGGTTATTGGTTACTGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006435-exon-sc0000067-1491911889:527057..527254 | TCONS_00006435-exon-sc0000067-1491911889:527057..527254 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1510915933:527057..527254 | TCONS_00006435-exon-sc0000067-1510915933:527057..527254 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1575043694:527057..527254 | TCONS_00006435-exon-sc0000067-1575043694:527057..527254 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1491911889:527717..528038 | TCONS_00006435-exon-sc0000067-1491911889:527717..528038 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1510915933:527717..528038 | TCONS_00006435-exon-sc0000067-1510915933:527717..528038 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1575043694:527717..528038 | TCONS_00006435-exon-sc0000067-1575043694:527717..528038 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1491911889:528597..528743 | TCONS_00006435-exon-sc0000067-1491911889:528597..528743 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1510915933:528597..528743 | TCONS_00006435-exon-sc0000067-1510915933:528597..528743 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1575043694:528597..528743 | TCONS_00006435-exon-sc0000067-1575043694:528597..528743 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1491911889:529162..530166 | TCONS_00006435-exon-sc0000067-1491911889:529162..530166 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1510915933:529162..530166 | TCONS_00006435-exon-sc0000067-1510915933:529162..530166 | Clytia hemisphaerica | exon |
| TCONS_00006435-exon-sc0000067-1575043694:529162..530166 | TCONS_00006435-exon-sc0000067-1575043694:529162..530166 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:527057..530166 + |
Blast
The following BLAST results are available for this feature:
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