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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006426 ID=TCONS_00006426|Name=TCONS_00006426|organism=Clytia hemisphaerica|type=transcript|length=1496bp
AATTTTTATCAATCAAAATTGATTGAAGTAAGAAAACAAGAAATGcaaag
ttgtttttttatattatcgTTGTGCACTTATTTACAAGAGATTTATatga
aatcttaaaattgagCAGCAAACTGTCTTCACTCGCAAACAATGGGAGTA
AAGATTTCTAAGGATTGTGATTCAATTTCGTCTGTAAAGACATATTGTGA
GTCACTTGTCTTCATTCGGTTTTATGGCCAGACCAATGCTATGAAGGGGA
AAATGGACGGAGAAGAGTTTGATAACGTCAATGAAAACCCAAAATCTGAG
CTTGGTCGATTACTTCAACAACTggacaaagaaatcaaaatggcAGAGAA
TGATTCGGAGTTAGAATTCACCGAACGAATCTTAGAAATATTCACGAAGA
TTGCCGAGATAAGAGCTTTCACGCATACGGAGGAAACCACTGAACAATGT
TTccaaagatttataaaagatgCTGAAAAATTCGCTGAAATTTACCGCAA
GCGCGGGAAGCAATCAGAATCCTTGAAAGAAGCCAATATACTTTATTGGG
GGACGCGTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGATTGGATAAAT
CGTGATAAAGAAACAGAAATGGAGACAATGGACCCGATATTCGGAGTATT
ATTAAATCCAACTGGTGGCAGAGTTGGCCCTGGAGACACGGGCTGGATTC
ATAATAAACTATTCGATGATCTCGGCCCCTTCGCTTATCATTCAGCTGTT
CACGACGCTTTCGGATATTTGAAAATCAATCACGATACAGGCCCTGGTTA
CTCATATTTGAATGGACGAAAAAATGGTGATTCGAACCCATTGCGGGGCC
AGGTAACGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGGCTCAAGCCT
GAAGAGGCTCCTGAAGAAAAATTTATATTGATGTGAATGTGTGAAAGGAT
TTTGGTAGGCCAGTAAAACGAAATGCGAGCAACGGATTGTCAATTTGTGA
ACGTTGGTCAAGTCATAATGCTGATGAATATTTTTAATTGATAGGTTCTC
ATGCTAAGACGTATATGCCTGAATAAAATAATTGAacctttttgtaaaat
atttaatttgagaatttttaatttttagtatGTATCCCTTTAAATGTTac
ttttcttttagttttagaCCCCACCCTTTAACCACTTTATTGTTGTTCTA
ACAGACTCAACTAGGAAGATAATTTTCTAATTGTAAGTAATGTAAGTAGA
GTCACGTGAGAAACATTTGAAaggttgttcttaaatttctgAATCGGTTG
AAACACAAAGTTAGTCCAACAAAGAAATATTACCTCGTAACAAATTAACT
TGAGTGATTCTTCTTCAGAAATCTCCAACAACTTTTTGAAGATGAAAGTC
AACCTCTCATAATCGAACGGACTTATCTAAAAAAAGTATACTCTATCTGT
TgaggttttgaaaagttttgaaatccaTCCAGTAATAAAAATACTT Run BLAST on NCBI protein sequence of TCONS_00006426-protein >TCONS_00006426-protein ID=TCONS_00006426-protein|Name=TCONS_00006426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MGVKISKDCDSISSVKTYCESLVFIRFYGQTNAMKGKMDGEEFDNVNENP
KSELGRLLQQLDKEIKMAENDSELEFTERILEIFTKIAEIRAFTHTEETT
EQCFQRFIKDAEKFAEIYRKRGKQSESLKEANILYWGTRQQMLFGKVLCD
WINRDKETEMETMDPIFGVLLNPTGGRVGPGDTGWIHNKLFDDLGPFAYH
SAVHDAFGYLKINHDTGPGYSYLNGRKNGDSNPLRGQVTGLKFWKDVVKR
LKPEEAPEEKFILM Run BLAST on NCBI transcript from alignment at sc0000067:396423..398822+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006426 ID=TCONS_00006426|Name=TCONS_00006426|organism=Clytia hemisphaerica|type=transcript|length=2400bp|location=Sequence derived from alignment at sc0000067:396423..398822+ (Clytia hemisphaerica)
AATTTTTATCAATCAAAATTGATTGAAGTAAGAAAACAAGAAATGcaaag
ttgtttttttatattatcgTTGTGCACTTATTTACAAGAGATTTATatga
aatcttaaaattgagCAGCAAACTGTCTTCACTCGCAAACAATGGGAGTA
AAGATTTCTAAGGATTGTGATTCAATTTCGTCTGTAAAGACATATTGTGA
GTCACTTGTCTTCATTCGGTTTTATGGCCAGACCAATGCTATGAAGGTac
ttaaagttttttcaaatacagccaactctctgtaattcgaactaaaatat
tggtccccttaGGCTGGAAAGTTGTTTATATagctctctgtaattcgaat
ctttttctaattcgaataaaatttttgatcccttgaagatcgaattagag
agagtcaacttcAAATGGTTATTGCGATTTATTTGTTTATGGGTTTCCAA
AGAGctgatttttaatttgatttaagGGGAAAATGGACGGAGAAGAGTTT
GATAACGTCAATGAAAACCCAAAATCTGAGCTTGGTCGATTACTTCAACA
ACTggacaaagaaatcaaaatggcAGAGAATGATTCGGAGTTAGAATTCA
CCGAACGAATCTTAGAAATATTCACGAAGATTGCCGAGATAAGAGCTTTC
ACGCATACGGAGGAAACCACTGAACAATGTTTccaaagatttataaaaga
tgCTGAAAAATTCGCTGAAATTTACCGCAAGCGCGGGAGTGAGTCTTTTT
ACTTCTCTAACATTTTAAGAGTGTGCCGTTGGTCCATTAGTggccaccac
gctgaagctctcaAGGATTGGTCCGATAGATAATCGGTGAGAGAAATGGA
ATTTCACGTGCTAACTATAGCTAAATTATCGATTTCTACTGCCCTAATAA
TTATGGAATTTAGAGGTGGGCTTAAACCTACCAAGTGTCGAAAATTTCCC
GacttttaaagttttcttttatcaGATCCAATTTTTATGCGTTTGCCTTT
TCCTATCGCTTCATCCGTAGAGGCTATATTATGGGAActccaaattaaaa
ttttcatatcaGTTTTAGGATTGGAAGAAGATTCAAAGAAATCATACTTT
TCAATACTCAACTTTTACTTCTTTTTAACCACCACCAACAGAGCAATCAG
AATCCTTGAAAGAAGCCAATATACTTTATTGGGGGACGCGTCAACAAATG
TTGTTCGGCAAAGTCCTTTGTGATTGGATAAATCGTGATAAAGAAACAGA
AATGGAGACAATGGACCCGATATTCGGAGTATTATTAAATCCAACTGGTG
GTATGTTAATATGTTGGAACTCTGgagatagaagtttttttttaaattta
ttttaccCAGGCCAGGGTAAAACTTCAATCTTACTTGAAAATCTTCAGCC
GTAACATCCGACTTTTTTATACATACTAAAAATTGGTGAATTAAAATgta
gagaaaaacaaaacagcacGCACTTGCTTTTATAAAGATTACCTTTAGGC
TTAGAAGGGAGGTTCATTTAGTCTAATTTTAGATAGAGAttataggaaat
atttttcatgttccATTTCAGGCAGAGTTGGCCCTGGAGACACGGGCTGG
ATTCATAATAAACTATTCGATGATCTCGGCCCCTTCGCTTATCATTCAGC
TGTTCACGACGCTTTCGGATATTTGAAAATCAATCACGATACAGGCCCTG
GTTACTCATATTTGAATGGACGAAAAAATGGTGATTCGAACCCATTGCGG
GGCCAGGTAACGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGGCTCAA
GCCTGAAGAGGCTCCTGAAGAAAAATTTATATTGATGTGAATGTGTGAAA
GGATTTTGGTAGGCCAGTAAAACGAAATGCGAGCAACGGATTGTCAATTT
GTGAACGTTGGTCAAGTCATAATGCTGATGAATATTTTTAATTGATAGGT
TCTCATGCTAAGACGTATATGCCTGAATAAAATAATTGAacctttttgta
aaatatttaatttgagaatttttaatttttagtatGTATCCCTTTAAATG
TTacttttcttttagttttagaCCCCACCCTTTAACCACTTTATTGTTGT
TCTAACAGACTCAACTAGGAAGATAATTTTCTAATTGTAAGTAATGTAAG
TAGAGTCACGTGAGAAACATTTGAAaggttgttcttaaatttctgAATCG
GTTGAAACACAAAGTTAGTCCAACAAAGAAATATTACCTCGTAACAAATT
AACTTGAGTGATTCTTCTTCAGAAATCTCCAACAACTTTTTGAAGATGAA
AGTCAACCTCTCATAATCGAACGGACTTATCTAAAAAAAGTATACTCTAT
CTGTTgaggttttgaaaagttttgaaatccaTCCAGTAATAAAAATACTT
Coding sequence (CDS) from alignment at sc0000067:396423..398822+ >TCONS_00006426 ID=TCONS_00006426|Name=TCONS_00006426|organism=Clytia hemisphaerica|type=CDS|length=3180bp|location=Sequence derived from alignment at sc0000067:396423..398822+ (Clytia hemisphaerica)
ATGGGAGTAAAGATTTCTAAGGATTGTGATTCAATTTCGTCTGTAAAGAC
ATATTGTGAGTCACTTGTCTTCATTCGGTTTTATGGCCAGACCAATGCTA
TGAAGGGGAAAATGGACGGAGAAGAGTTTGATAACGTCAATGAAAACCCA
AAATCTGAGCTTGGTCGATTACTTCAACAACTggacaaagaaatcaaaat
ggcAGAGAATGATTCGGAGTTAGAATTCACCGAACGAATCTTAGAAATAT
TCACGAAGATTGCCGAGATAAGAGCTTTCACGCATACGGAGGAAACCACT
GAACAATGTTTccaaagatttataaaagatgCTGAAAAATTCGCTGAAAT
TTACCGCAAGCGCGGGAAGCAATCAGAATCCTTGAAAGAAGCCAATATAC
TTTATTGGGGGACGCGTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGAT
TGGATAAATCGTGATAAAGAAACAGAAATGGAGACAATGGACCCGATATT
CGGAGTATTATTAAATCCAACTGGTGGCAGAGTTGGCCCTGGAGACACGG
GCTGGATTCATAATAAACTATTCGATGATCTCGGCCCCTTCGCTTATCAT
TCAGCTGTTCACGACGCTTTCGGATATTTGAAAATCAATCACGATACAGG
CCCTGGTTACTCATATTTGAATGGACGAAAAAATGGTGATTCGAACCCAT
TGCGGGGCCAGGTAACGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGG
CTCAAGCCTGAAGAGGCTCCTGAAGAAAAATTTATATTGATGTGAATGGG
AGTAAAGATTTCTAAGGATTGTGATTCAATTTCGTCTGTAAAGACATATT
GTGAGTCACTTGTCTTCATTCGGTTTTATGGCCAGACCAATGCTATGAAG
GGGAAAATGGACGGAGAAGAGTTTGATAACGTCAATGAAAACCCAAAATC
TGAGCTTGGTCGATTACTTCAACAACTggacaaagaaatcaaaatggcAG
AGAATGATTCGGAGTTAGAATTCACCGAACGAATCTTAGAAATATTCACG
AAGATTGCCGAGATAAGAGCTTTCACGCATACGGAGGAAACCACTGAACA
ATGTTTccaaagatttataaaagatgCTGAAAAATTCGCTGAAATTTACC
GCAAGCGCGGGAAGCAATCAGAATCCTTGAAAGAAGCCAATATACTTTAT
TGGGGGACGCGTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGATTGGAT
AAATCGTGATAAAGAAACAGAAATGGAGACAATGGACCCGATATTCGGAG
TATTATTAAATCCAACTGGTGGCAGAGTTGGCCCTGGAGACACGGGCTGG
ATTCATAATAAACTATTCGATGATCTCGGCCCCTTCGCTTATCATTCAGC
TGTTCACGACGCTTTCGGATATTTGAAAATCAATCACGATACAGGCCCTG
GTTACTCATATTTGAATGGACGAAAAAATGGTGATTCGAACCCATTGCGG
GGCCAGGTAACGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGGCTCAA
GCCTGAAGAGGCTCCTGAAGAAAAATTTATATTGATGTGAATGGGAGTAA
AGATTTCTAAGGATTGTGATTCAATTTCGTCTGTAAAGACATATTGTGAG
TCACTTGTCTTCATTCGGTTTTATGGCCAGACCAATGCTATGAAGGGGAA
AATGGACGGAGAAGAGTTTGATAACGTCAATGAAAACCCAAAATCTGAGC
TTGGTCGATTACTTCAACAACTggacaaagaaatcaaaatggcAGAGAAT
GATTCGGAGTTAGAATTCACCGAACGAATCTTAGAAATATTCACGAAGAT
TGCCGAGATAAGAGCTTTCACGCATACGGAGGAAACCACTGAACAATGTT
TccaaagatttataaaagatgCTGAAAAATTCGCTGAAATTTACCGCAAG
CGCGGGAAGCAATCAGAATCCTTGAAAGAAGCCAATATACTTTATTGGGG
GACGCGTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGATTGGATAAATC
GTGATAAAGAAACAGAAATGGAGACAATGGACCCGATATTCGGAGTATTA
TTAAATCCAACTGGTGGCAGAGTTGGCCCTGGAGACACGGGCTGGATTCA
TAATAAACTATTCGATGATCTCGGCCCCTTCGCTTATCATTCAGCTGTTC
ACGACGCTTTCGGATATTTGAAAATCAATCACGATACAGGCCCTGGTTAC
TCATATTTGAATGGACGAAAAAATGGTGATTCGAACCCATTGCGGGGCCA
GGTAACGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGGCTCAAGCCTG
AAGAGGCTCCTGAAGAAAAATTTATATTGATGTGAATGGGAGTAAAGATT
TCTAAGGATTGTGATTCAATTTCGTCTGTAAAGACATATTGTGAGTCACT
TGTCTTCATTCGGTTTTATGGCCAGACCAATGCTATGAAGGGGAAAATGG
ACGGAGAAGAGTTTGATAACGTCAATGAAAACCCAAAATCTGAGCTTGGT
CGATTACTTCAACAACTggacaaagaaatcaaaatggcAGAGAATGATTC
GGAGTTAGAATTCACCGAACGAATCTTAGAAATATTCACGAAGATTGCCG
AGATAAGAGCTTTCACGCATACGGAGGAAACCACTGAACAATGTTTccaa
agatttataaaagatgCTGAAAAATTCGCTGAAATTTACCGCAAGCGCGG
GAAGCAATCAGAATCCTTGAAAGAAGCCAATATACTTTATTGGGGGACGC
GTCAACAAATGTTGTTCGGCAAAGTCCTTTGTGATTGGATAAATCGTGAT
AAAGAAACAGAAATGGAGACAATGGACCCGATATTCGGAGTATTATTAAA
TCCAACTGGTGGCAGAGTTGGCCCTGGAGACACGGGCTGGATTCATAATA
AACTATTCGATGATCTCGGCCCCTTCGCTTATCATTCAGCTGTTCACGAC
GCTTTCGGATATTTGAAAATCAATCACGATACAGGCCCTGGTTACTCATA
TTTGAATGGACGAAAAAATGGTGATTCGAACCCATTGCGGGGCCAGGTAA
CGGGTTTAAAGTTTTGGAAAGATGTTGTTAAAAGGCTCAAGCCTGAAGAG
GCTCCTGAAGAAAAATTTATATTGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006426-exon-sc0000067-1491911889:396423..396668 | TCONS_00006426-exon-sc0000067-1491911889:396423..396668 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1510915933:396423..396668 | TCONS_00006426-exon-sc0000067-1510915933:396423..396668 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1575043694:396423..396668 | TCONS_00006426-exon-sc0000067-1575043694:396423..396668 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1491911889:396899..397160 | TCONS_00006426-exon-sc0000067-1491911889:396899..397160 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1510915933:396899..397160 | TCONS_00006426-exon-sc0000067-1510915933:396899..397160 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1575043694:396899..397160 | TCONS_00006426-exon-sc0000067-1575043694:396899..397160 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1491911889:397564..397722 | TCONS_00006426-exon-sc0000067-1491911889:397564..397722 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1510915933:397564..397722 | TCONS_00006426-exon-sc0000067-1510915933:397564..397722 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1575043694:397564..397722 | TCONS_00006426-exon-sc0000067-1575043694:397564..397722 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1491911889:397994..398822 | TCONS_00006426-exon-sc0000067-1491911889:397994..398822 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1510915933:397994..398822 | TCONS_00006426-exon-sc0000067-1510915933:397994..398822 | Clytia hemisphaerica | exon |
| TCONS_00006426-exon-sc0000067-1575043694:397994..398822 | TCONS_00006426-exon-sc0000067-1575043694:397994..398822 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:396423..398822 + |
Blast
The following BLAST results are available for this feature:
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