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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006420 ID=TCONS_00006420|Name=TCONS_00006420|organism=Clytia hemisphaerica|type=transcript|length=1479bp
GTTCGAGATGAAGAACCAGCTAAATTCCTCTACCTGCGGTGATATTTCTA
TGTTGTCTTCTGTTGTTACTCGTCATTCTCGCCATACTCTACTTCGTCGT
CTTGAAAAACGAGAATTTGTGTTCGGGCCTCACAGGACATGGTACAGGAG
AAGAAGGAGAGGAAGGGGAAGCATTATTAGCAACCGAGACAGAAAATCCA
GATGGCCCCGTCGATGGTGGTGGGGATGGAGCTGGAGGGAGCTTAGCTAC
AGACGTCGAGAAAGGGCTACCGACAGGGTCGAAGAAGGGCTCCCCAGTAG
CCAGTACCTCTGCGAGAGGTAGCCCTCGTGTAGCAGCAAGTCTAGTAGAA
GAAAAACCGCAACCTGGTCCTTCCAAAGCGCCAATCGCACTACCACCATC
GCCTGTCAAACCCAAATCACCTCAGGAGCCAAAACCAGCCACCAACACAA
CCACTGAAAGTGGCGGCGGAGATGTTGGGTTTATTTCCACTAATGAAGAA
GCGCCTTGTCTTGCAGGGAAAGTATTGATGTCTTTCACGTATCTGCCTGC
CGCTAATAAACTGAACTTAAAAGTCATTCGTTTGGCTGAGTTACCGTCCA
TTAAGCGGGGCGGCGCCGATAGCGTGCGCATTCATTTGTGTGTTTTACCG
ATGCGGAAACAGAGGTTCAAGACGAAGATTCAAACCGCATCACAAGGTGT
GTTCAACCAGACGTTCCAATTCGTCCACATGACCAAAGATTTATTGGAGA
CGTGTGCGATCCGTTTACGTGTATACGGGAAAAAGGGATTCAACACAACA
AAACTAATCGGAGAAGCAAAAATCAATCTAGCGAAAGTGGATTTGACAAG
TCCATTGGCCGATGGTGATATTTGGAAGAATCTCAGTCCCAAAGGAGAAG
TGGCGAAGTATTACAACATTGACGAAGAAGACGAACCGGACGACATTGAT
GACTGGGCTGAGTAGATTCCGGACACTCCCGGACAAATATTTGGCGCCCG
ATAGAAAAAGACCCAAAGCCTCTGCCGTTAACTCTTCGCCACGTCTCTTT
TCACAAGCGGACTCACCGTAAAACCATCAACAGACTCTTGACTTGCAAAA
ATACTTCACAAAACAGAGAAAAAATGGAAACATTTTCGATCGATATACCT
AGCATAGCACTAACTTTAAAAAATGCTAACTGAATCTAAAAGCAAGAGGG
TGGCTAATAACGCATTTGAACTCCAAACCTCTTTAAGTTCGCTAAACGAA
CAAATAGTCACTCCCCCTTGCTTTTAGACTCATTGCACTTGACGCTAACA
AACCAAATGaatagttttgttttttttaatctttgacTTTTTCCTGTATA
TATGTAAATACTGTAGAAGGACAAAAGGGTGCTGGTCGCTCTTTCTATTT
GActtgtaaatatcatatttttctaaaagatactttttgaaatctctatG
TTAGAGATGTTATATAGATTGAAACCGTT Run BLAST on NCBI transcript from alignment at sc0000067:292779..299349+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006420 ID=TCONS_00006420|Name=TCONS_00006420|organism=Clytia hemisphaerica|type=transcript|length=6571bp|location=Sequence derived from alignment at sc0000067:292779..299349+ (Clytia hemisphaerica)
GTTCGAGATGAAGAACCAGCTAAAGTAAGAAAAGGTCTTTCAAATCGTGA
CTCGCAAAACATCAGCAAAAACCTACTTTTAGTCTAAATAACCCTGCAAA
AATCCAGGAAAAAGAACTCAGCAAAGATTGGAAGGGTTTTATTATAGATA
AAGCCTCACGAATCTTTTGATAGACTTTATTCCATACCACATGAAGAATC
GGCAAGGAGTAAGAATacgattgattgaaaaaaattgacagacGGGAGGT
AATATTTTCCAACCATATAATGACATTTTCTTTCCTTCTCGTTTCAGTTC
CTCTACCTGCGGTGATATTTCTATGTTGTCTTCTGTTGTTACTCGTCATT
CTCGCCATACTCTACTTCGTCGTCTTGAAAAACGAGAATTTGTGTTCGGG
CCTCACAGGACATGGTACAGGAGAAGAAGGAGAGGAAGGTAAGTTTCTCC
CTGTGGAGGAgagtttttgctttgttttcttCCCTTATAAATAAAAGAGT
GTACTCCATCATACTGTTTTTTTGTATGTAAAAGTTATGAAAGTCGATCA
TTAAGTCTAGATCTGTGCAGATTTACAACATAGCCTTAAAGCCAGTCTCA
ACTCgataaattgaccaaaaaagtCTAGATCTCaactttttgacaaattt
taacTCCAAATTCCGACGTTAGGACCGGTGTGATAGCAAAGAAAAAGGGT
GCCTTCGACCTTCCCAGCCCGACAGGGCCTTCCGAAGGCCACGTAAAAGT
AATGCCTCTTTAGACTGAATAAAAATTTGCCACACAAACAAATCTTTCGT
AAAATCTTTTATCTTATTGATTTGATTGTGAATCAAAGCTAAATCGACAA
CGTGTAAAACAAATTCACCAGCGTCAATTGAAAAACGCGGAAAAGAATAA
GGGAATAAGGAGAAATAAGTTTACAGCTTAAGCTTCTGAGCTGTAGTTGA
GAATGCATGTCTCTGTGTAAGAGATGTGTTCGTGCCTTAAATTATTGGCA
TCAAAACTCGTTCACAAACTTCCGAGTCTTGGAAAATTCAGCAAATTTTG
TTGCTGCTGTCTTTTAGGGGAAGCATTATTAGCAACCGAGACAGAAAATC
CAGATGGCCCCGTCGATGGTGGTGGGGATGGAGCTGGAGGGAGCTTAGCT
ACAGACGTCGAGAAAGGGCTACCGACAGGGTCGAAGAAGGGCTCCCCAGT
AGCCAGTACCTCTGCGAGAGGTAGCCCTCGTGTAGCAGCAAGTCTAGTAG
AAGAAAAACCGCAACCTGGTCCTTCCAAAGCGCCAATCGCACTACCACCA
TCGCCTGTCAAACCCAAATCACCTCAGGAGCCAAAACCAGCCACCAACAC
AACCACTGAAAGTGGCGGCGGAGATGTTGGGTTTATTTCCACTAATGAAG
AAGCGCCTTGTCTTGCAGGGAAAGTATTGATGTCTTTCACGTATCTGCCT
GCCGCTAATAAACTGAACTTAAAAGTCATTCGTTTGGCTGAGTTACCGTC
CATTAAGCGGGGCGGCGCCGATAGCGTGCGCATTCATTTGTGTGTTTTAC
CGATGCGGAAACAGAGGTTCAAGACGAAGATTCAAACCGCATCACAAGGT
GTGTTCAACCAGACGTTCCAATTCGTCCACATGACCAAAGATTTATTGGA
GACGTGTGCGATCCGTTTACGTGTATACGGGAAAAAGGGATTCAACACAA
CAAAACTAATCGGAGAAGCAAAAATCAATCTAGCGAAAGTGGATTTGACA
AGTCCATTGGCCGATGGTGATATTTGGAAGAATCTCAGTCCCAAAGGAGA
AGTGGTAAGCCTTCAACATCCTTCTTGTTGTCTTGCACAACCTTTCCAAA
GAAAACGCTCCGTTAAATATCGCAAAAAGAAACGGCTTTGATGACATGCT
CTTTTTCGCACTTGAAACGTAGACAGcacattaatttttttattgaaaca
aactcttgacaattttgatttttggtgcaGGGAAAAGGATggtgttgtaa
aattttcatttttggaaagacaatgaaatgaaaatgataaaatagaaatt
tcctggtaaaaaaaattgaaataatcgACGAGTTtcacaatttgagaaaa
taccatttttacgaaagaagaaaaaagaggtttttaaaaaagtatttggT
TCGATATTTTTCACGATTTTATAATGTGAGATTTACATGGAGAGTTTTTC
TTGTCAAATTTTGTCgaataaaaaaaatactgtGAATTCTTAATCATTTT
ACAAACTTTGAAAACATCGTTCTAGAATCCATTCTGTAGCGCCCATGTTT
CCCAACCGTAAGAAGCCGCTCATTGAATCTATTTCTTTTTGCGATATTTG
ACATACAATACCCAGACCTGCATAAGTTATGACGTGGGAAAAAAATCCCC
AAACTTTTTTAACATAATGAGCATCTCAGGAATTTTACTATACCGGTTTA
TTCTCAATGCCGTGAAAAAGAGACAAATTTGACGTGAGGATATTTTGTTA
AATCTTGACAAATAAAGAGTAGTTTAGGTATCGAGGGAGTTCGAACTACT
ATGTGTGCAGACAAAAAAGGTCTCAAAATGTAGCCCTTACAATACAGGGA
TTatttagccaaaaatcgacccttacgatacatttttggcacaaaatgat
aaaattttccaaaattcttCACTTTCAACACCCTTACAATGCACTTTGTC
TCATTTTGAACCTTACAGTGAACTTTGTGAAGTCTGAACAATGCACTCTT
TATCTATAGCGAGGTTACATACCTGCTTGTTTAAACTAGAAAACACTTTT
CTCATCTCCGATGTGGTGAAAGTCTTCTAGGAAGGCCCGACTGCTCTTGG
GTTTAAAAAGTGTAATTAAATGGTGCTTTTTTAAAAGGTCTAAGGAAGAC
TGAAAAATAATGATGGGGAATTTAACCACTTATAAGGCTTTCAAAGCTTT
TTAAACGTAACTTTGTTTCCTTGCAGCTTTCAAATAAACGGGAGACTATC
TTTTTGATAGggtaaaatgtttcttttttcatGTCACTCCAAAATGCCTC
GTAACTCAATCAATACTATGTGATCTACAGTTTCCTGGTAGGTTCTAATC
AGCCCTCGCATAGAAACACGACAACGTTAAACCTAAAGATAAAAGACATT
TCCACTGACTCATCATTCTGATCATTCTCAGTAAAATAGTAAAATGCacg
ataaataaataaataaataaataaataaataaagcaGTTCTAAATATCCT
TAACaagattttttgattaaaattaaGATAAATGCTGAATCATTATCATA
AAGTTGTACACCCAGGGGGGGGGCGTAGGCGAAACTGGATacgggacgtg
ccgctggtcagggtctcTTTTATAGgttctgaagatatctgacagggtcc
actttttaTTATTTGGACATTTTTGCAgggtaaaaattagaaaacttttt
agtttttcgtctacttttagtcatttttgccacttgttagtggggcgtac
ggtttttcggaattgcggaaatcggcccttttttcttcggaattttggaa
atcaggcaaaattcttTCGGTATTTTCGGAATTCTATAATTgattcggta
tcggaaatccatgaatttttgcttcgaaattttggTATTggaaagttttt
atccccttttttcggaattcatacatgaaaatcaaatttgatgaaaaatt
agccaaaacgaggaaaaatacccaaaaaaatcagtatcggaattgcaagt
atttttttacggaatttcggaaattttggcaaaattattcggtatttccg
AAAtcacaaaccccgtacgcccgtAGGGTGGAAATTggaaagattttcaa
tttttcattcggACAGGGTCatcattttaccaaaaattcgtatctgacag
ggtcaactCCAGCGGCACCTCCCCGTCAGctgtcaaggtcagtgcccccc
cccaggGTTGTACACAAACTCTTCGAGCAAATTAATCTTCTCAGAAGTCA
CGTCGCAtatatctaaaaatacaataacCTTCTCATTACAACATTCATAA
CCCTTAAGCACCCAGTTCACATAAAACACTAACCACCATTGTAAAACTCG
CATAATTTCCCATCCACTCAACTTTCAGGCGAAGTATTACAACATTGACG
AAGAAGACGAACCGGACGACATTGATGACTGGGCTGAGTAGATTCCGGAC
ACTCCCGGACAAATATTTGGCGCCCGATAGAAAAAGACCCAAAGCCTCTG
CCGTTAACTCTTCGCCACGTCTCTTTTCACAAGCGGACTCACCGTAAAAC
CATCAACAGACTCTTGACTTGCAAAAATACTTCACAAAACAGAGAAAAAA
TGGAAACATTTTCGATCGATATACCTAGCATAGCACTAACTTTAAAAAAT
GCTAACTGAATCTAAAAGCAAGAGGGTGGCTAATAACGCATTTGAACTCC
AAACCTCTTTAAGTTCGCTAAACGAACAAATAGTCACTCCCCCTTGCTTT
TAGACTCATTGCACTTGACGCTAACAAACCAAATGaatagttttgttttt
tttaatctttgacTTTTTCCTGTATATATGTAAATACTGTAGAAGGACAA
AAGGGTGCTGGTCGCTCTTTCTATTTGActtgtaaatatcatatttttct
aaaagatactttttgaaatctctatGTTAGAGATGTTATATAGATTGAAA
CCGTTTTCCATTTAAACCTAATTCTATATAAAGCTTGGAGTACTGTACAT
AACTTCATTACTGTACTGCCTAAGTGCCCCCACAGAACCCTTCACTCGGT
TGGGAGAAAAGTTCAATCTACATTctaaatggggatagaaaatctattgc
ttACATGCCAATAAAGCCAGTAGAAGACTTATGACTTTTGCTAATTTTCC
AGTTGATTGGTACTAATTTCATACTAAGACAAAGAGTGAAGCATAAAACT
ATCCAAACTATCCCCAACAGTCCATAATTTCTCCAAGAACGTTATCGAAT
AATGAATTTGTATGAAATAATGATTGAGATTGAATCTTAAGTTTTAAAAG
GTTGTTTGCTGTTTCAGCCGTTTGACGAAGATGGCAATTCTTCATTCAAC
CTGAGTGATCTTTCAAGTCTGGCCAGTTTTGGGGAATCCGAAACGAAGCC
AGAATTGTTAGTCAATCTTCGATACACTGATTTGACGGGCCGCTTGACCG
TTGAAGTTATCCAAGCCgctaatttgaagaaaaccATTATGATCGTTGCG
CCAGGTAATTCTAATCCTTTGTCAGCATATTATACATCTATGAAGGTCCA
AATACTGAATTATCGTCTTATttcatacacccctgtctcactaccccggt
ggagcttttttCTATAACGTGgattaaaaatttatcaaattccCAATAGG
GATAGAAGTTTTATTGTTCTAagctaaaaaaatccaatgagaGTGGTTTT
AGAGTGAAATCTTTTAAcgtgaatttcaaatgggggatgaaataaaagta
aatatcccagtgaggctgaaattctagggtaatTTTTCCTATtggggacg
aaattttcgcCACATTTTCCATTGGGTGGGGCTATCAACGGGTCTGTGAC
ATATAGGTGTTTTGCAATAGAATCAAGCCTCGAAAAATACAAAACACGTG
AGATGCCAGGAGCGGCGCTTTCTTTCCCTGGAGGATGAGGAGAGAGAGTG
CAGgtcatcttttaccaatgacGATTGTTCTGTTAACTAACTCCATCTTT
AGATACTTTCGTCAAAATACAGTGTGTTACAGCCAAGGGTAAAATGATCG
GGAAAAGCAAGACTACCGTGCGACGTTTACAAGCTAACCCTGAGTATAAC
GAGAAATTCATATATCCAATCCCTGAAGAAGACTTGAANATAACCTTCTC
ATTACAACATTCATAACCCTTAAGCACCCAGTTCACATAAAACACTAACC
ACCATTGTAAAACTCGCATAATTTCCCATCCACTCAACTTTCAGGCGAAG
TATTACAACATTGACGAAGAAGACGAACCGGACGACATTGATGACTGGGC
TGAGTAGATTCCGGACACTCCCGGACAAATATTTGGCGCCCGATAGAAAA
AGACCCAAAGCCTCTGCCGTTAACTCTTCGCCACGTCTCTTTTCACAAGC
GGACTCACCGTAAAACCATCAACAGACTCTTGACTTGCAAAAATACTTCA
CAAAACAGAGAAAAAATGGAAACATTTTCGATCGATATACCTAGCATAGC
ACTAACTTTAAAAAATGCTAACTGAATCTAAAAGCAAGAGGGTGGCTAAT
AACGCATTTGAACTCCAAACCTCTTTAAGTTCGCTAAACGAACAAATAGT
CACTCCCCCTTGCTTTTAGACTCATTGCACTTGACGCTAACAAACCAAAT
GaatagttttgttttttttaatctttgacTTTTTCCTGTATATATGTAAA
TACTGTAGAAGGACAAAAGGGTGCTGGTCGCTCTTTCTATTTGActtgta
aatatcatatttttctaaaagatactttttgaaatctctatGTTAGAGAT
GTTATATAGATTGAAACCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006420-exon-sc0000067-1491911889:292779..292802 | TCONS_00006420-exon-sc0000067-1491911889:292779..292802 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1510915933:292779..292802 | TCONS_00006420-exon-sc0000067-1510915933:292779..292802 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1575043694:292779..292802 | TCONS_00006420-exon-sc0000067-1575043694:292779..292802 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1491911889:293076..293216 | TCONS_00006420-exon-sc0000067-1491911889:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1510915933:293076..293216 | TCONS_00006420-exon-sc0000067-1510915933:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1575043694:293076..293216 | TCONS_00006420-exon-sc0000067-1575043694:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1491911889:293846..294582 | TCONS_00006420-exon-sc0000067-1491911889:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1510915933:293846..294582 | TCONS_00006420-exon-sc0000067-1510915933:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1575043694:293846..294582 | TCONS_00006420-exon-sc0000067-1575043694:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1491911889:298773..299349 | TCONS_00006420-exon-sc0000067-1491911889:298773..299349 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1510915933:298773..299349 | TCONS_00006420-exon-sc0000067-1510915933:298773..299349 | Clytia hemisphaerica | exon |
| TCONS_00006420-exon-sc0000067-1575043694:298773..299349 | TCONS_00006420-exon-sc0000067-1575043694:298773..299349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:292779..299349 + |
Blast
BLAST of TCONS_00006420 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.824e-16 Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 3
Query: 516 GKVLMSFTYLPAANKLNLKVIRLAELPSIKRGGADSVRIHLCVLPMRKQRFKTKIQTASQGVFNQTFQFVHMTKDLLETCAIRLRVYGKKGFNTTKLIGEAKINLAKVDLTSPLA 860
G + ++F Y KL + V + ++P+ R G +S ++HL +LP++KQR KT IQ VF +TF+F H+ +++ A+R R+YG K++GE L K++L ++
Sbjct: 262 GTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMS 376
The following BLAST results are available for this feature:
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