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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006418 ID=TCONS_00006418|Name=TCONS_00006418|organism=Clytia hemisphaerica|type=transcript|length=1243bp
AGAGAGAAGAGGGCAGTAGGTGTTTGTTCGAGATGAAGAACCAGCTAAAT
TCCTCTACCTGCGGTGATATTTCTATGTTGTCTTCTGTTGTTACTCGTCA
TTCTCGCCATACTCTACTTCGTCGTCTTGAAAAACGAGAATTTGTGTTCG
GGCCTCACAGGACATGGTACAGGAGAAGAAGGAGAGGAAGGGGAAGCATT
ATTAGCAACCGAGACAGAAAATCCAGATGGCCCCGTCGATGGTGGTGGGG
ATGGAGCTGGAGGGAGCTTAGCTACAGACGTCGAGAAAGGGCTACCGACA
GGGTCGAAGAAGGGCTCCCCAGTAGCCAGTACCTCTGCGAGAGGTAGCCC
TCGTGTAGCAGCAAGTCTAGTAGAAGAAAAACCGCAACCTGGTCCTTCCA
AAGCGCCAATCGCACTACCACCATCGCCTGTCAAACCCAAATCACCTCAG
GAGCCAAAACCAGCCACCAACACAACCACTGAAAGTGGCGGCGGAGATGT
TGGGTTTATTTCCACTAATGAAGAAGCGCCTTGTCTTGCAGGGAAAGTAT
TGATGTCTTTCACGTATCTGCCTGCCGCTAATAAACTGAACTTAAAAGTC
ATTCGTTTGGCTGAGTTACCGTCCATTAAGCGGGGCGGCGCCGATAGCGT
GCGCATTCATTTGTGTGTTTTACCGATGCGGAAACAGAGGTTCAAGACGA
AGATTCAAACCGCATCACAAGGTGTGTTCAACCAGACGTTCCAATTCGTC
CACATGACCAAAGATTTATTGGAGACGTGTGCGATCCGTTTACGTGTATA
CGGGAAAAAGGGATTCAACACAACAAAACTAATCGGAGAAGCAAAAATCA
ATCTAGCGAAAGTGGATTTGACAAGTCCATTGGCCGATGGTGATATTTGG
AAGAATCTCAGTCCCAAAGGAGAAGTGGCGAAGTATTACAACATTGACGA
AGAAGACGAACCGGACGACATTGATGACTGGGCTGAGTAGATTCCGGACA
CTCCCGGACAAATATTTGGCGCCCGATAGAAAAAGACCCAAAGCCTCTGC
CGTTAACTCTTCGCCACGTCTCTTTTCACAAGCGGACTCACCGTAAAACC
ATCAACAGACTCTTGACTTGCAAAAATACTTCACAAAACAGAGAAAAAAT
GGAAACATTTTCGATCGATATACCTAGCATAGCACTAACTTTAAAAAATG
CTAACTGAATCTAAAAGCAAGAGGGTGGCTAATAACGCATTTG Run BLAST on NCBI transcript from alignment at sc0000067:292754..297222+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006418 ID=TCONS_00006418|Name=TCONS_00006418|organism=Clytia hemisphaerica|type=transcript|length=4469bp|location=Sequence derived from alignment at sc0000067:292754..297222+ (Clytia hemisphaerica)
AGAGAGAAGAGGGCAGTAGGTGTTTGTTCGAGATGAAGAACCAGCTAAAG
TAAGAAAAGGTCTTTCAAATCGTGACTCGCAAAACATCAGCAAAAACCTA
CTTTTAGTCTAAATAACCCTGCAAAAATCCAGGAAAAAGAACTCAGCAAA
GATTGGAAGGGTTTTATTATAGATAAAGCCTCACGAATCTTTTGATAGAC
TTTATTCCATACCACATGAAGAATCGGCAAGGAGTAAGAATacgattgat
tgaaaaaaattgacagacGGGAGGTAATATTTTCCAACCATATAATGACA
TTTTCTTTCCTTCTCGTTTCAGTTCCTCTACCTGCGGTGATATTTCTATG
TTGTCTTCTGTTGTTACTCGTCATTCTCGCCATACTCTACTTCGTCGTCT
TGAAAAACGAGAATTTGTGTTCGGGCCTCACAGGACATGGTACAGGAGAA
GAAGGAGAGGAAGGTAAGTTTCTCCCTGTGGAGGAgagtttttgctttgt
tttcttCCCTTATAAATAAAAGAGTGTACTCCATCATACTGTTTTTTTGT
ATGTAAAAGTTATGAAAGTCGATCATTAAGTCTAGATCTGTGCAGATTTA
CAACATAGCCTTAAAGCCAGTCTCAACTCgataaattgaccaaaaaagtC
TAGATCTCaactttttgacaaattttaacTCCAAATTCCGACGTTAGGAC
CGGTGTGATAGCAAAGAAAAAGGGTGCCTTCGACCTTCCCAGCCCGACAG
GGCCTTCCGAAGGCCACGTAAAAGTAATGCCTCTTTAGACTGAATAAAAA
TTTGCCACACAAACAAATCTTTCGTAAAATCTTTTATCTTATTGATTTGA
TTGTGAATCAAAGCTAAATCGACAACGTGTAAAACAAATTCACCAGCGTC
AATTGAAAAACGCGGAAAAGAATAAGGGAATAAGGAGAAATAAGTTTACA
GCTTAAGCTTCTGAGCTGTAGTTGAGAATGCATGTCTCTGTGTAAGAGAT
GTGTTCGTGCCTTAAATTATTGGCATCAAAACTCGTTCACAAACTTCCGA
GTCTTGGAAAATTCAGCAAATTTTGTTGCTGCTGTCTTTTAGGGGAAGCA
TTATTAGCAACCGAGACAGAAAATCCAGATGGCCCCGTCGATGGTGGTGG
GGATGGAGCTGGAGGGAGCTTAGCTACAGACGTCGAGAAAGGGCTACCGA
CAGGGTCGAAGAAGGGCTCCCCAGTAGCCAGTACCTCTGCGAGAGGTAGC
CCTCGTGTAGCAGCAAGTCTAGTAGAAGAAAAACCGCAACCTGGTCCTTC
CAAAGCGCCAATCGCACTACCACCATCGCCTGTCAAACCCAAATCACCTC
AGGAGCCAAAACCAGCCACCAACACAACCACTGAAAGTGGCGGCGGAGAT
GTTGGGTTTATTTCCACTAATGAAGAAGCGCCTTGTCTTGCAGGGAAAGT
ATTGATGTCTTTCACGTATCTGCCTGCCGCTAATAAACTGAACTTAAAAG
TCATTCGTTTGGCTGAGTTACCGTCCATTAAGCGGGGCGGCGCCGATAGC
GTGCGCATTCATTTGTGTGTTTTACCGATGCGGAAACAGAGGTTCAAGAC
GAAGATTCAAACCGCATCACAAGGTGTGTTCAACCAGACGTTCCAATTCG
TCCACATGACCAAAGATTTATTGGAGACGTGTGCGATCCGTTTACGTGTA
TACGGGAAAAAGGGATTCAACACAACAAAACTAATCGGAGAAGCAAAAAT
CAATCTAGCGAAAGTGGATTTGACAAGTCCATTGGCCGATGGTGATATTT
GGAAGAATCTCAGTCCCAAAGGAGAAGTGGTAAGCCTTCAACATCCTTCT
TGTTGTCTTGCACAACCTTTCCAAAGAAAACGCTCCGTTAAATATCGCAA
AAAGAAACGGCTTTGATGACATGCTCTTTTTCGCACTTGAAACGTAGACA
Gcacattaatttttttattgaaacaaactcttgacaattttgatttttgg
tgcaGGGAAAAGGATggtgttgtaaaattttcatttttggaaagacaatg
aaatgaaaatgataaaatagaaatttcctggtaaaaaaaattgaaataat
cgACGAGTTtcacaatttgagaaaataccatttttacgaaagaagaaaaa
agaggtttttaaaaaagtatttggTTCGATATTTTTCACGATTTTATAAT
GTGAGATTTACATGGAGAGTTTTTCTTGTCAAATTTTGTCgaataaaaaa
aatactgtGAATTCTTAATCATTTTACAAACTTTGAAAACATCGTTCTAG
AATCCATTCTGTAGCGCCCATGTTTCCCAACCGTAAGAAGCCGCTCATTG
AATCTATTTCTTTTTGCGATATTTGACATACAATACCCAGACCTGCATAA
GTTATGACGTGGGAAAAAAATCCCCAAACTTTTTTAACATAATGAGCATC
TCAGGAATTTTACTATACCGGTTTATTCTCAATGCCGTGAAAAAGAGACA
AATTTGACGTGAGGATATTTTGTTAAATCTTGACAAATAAAGAGTAGTTT
AGGTATCGAGGGAGTTCGAACTACTATGTGTGCAGACAAAAAAGGTCTCA
AAATGTAGCCCTTACAATACAGGGATTatttagccaaaaatcgaccctta
cgatacatttttggcacaaaatgataaaattttccaaaattcttCACTTT
CAACACCCTTACAATGCACTTTGTCTCATTTTGAACCTTACAGTGAACTT
TGTGAAGTCTGAACAATGCACTCTTTATCTATAGCGAGGTTACATACCTG
CTTGTTTAAACTAGAAAACACTTTTCTCATCTCCGATGTGGTGAAAGTCT
TCTAGGAAGGCCCGACTGCTCTTGGGTTTAAAAAGTGTAATTAAATGGTG
CTTTTTTAAAAGGTCTAAGGAAGACTGAAAAATAATGATGGGGAATTTAA
CCACTTATAAGGCTTTCAAAGCTTTTTAAACGTAACTTTGTTTCCTTGCA
GCTTTCAAATAAACGGGAGACTATCTTTTTGATAGggtaaaatgtttctt
ttttcatGTCACTCCAAAATGCCTCGTAACTCAATCAATACTATGTGATC
TACAGTTTCCTGGTAGGTTCTAATCAGCCCTCGCATAGAAACACGACAAC
GTTAAACCTAAAGATAAAAGACATTTCCACTGACTCATCATTCTGATCAT
TCTCAGTAAAATAGTAAAATGCacgataaataaataaataaataaataaa
taaataaagcaGTTCTAAATATCCTTAACaagattttttgattaaaatta
aGATAAATGCTGAATCATTATCATAAAGTTGTACACCCAGGGGGGGGGCG
TAGGCGAAACTGGATacgggacgtgccgctggtcagggtctcTTTTATAG
gttctgaagatatctgacagggtccactttttaTTATTTGGACATTTTTG
CAgggtaaaaattagaaaactttttagtttttcgtctacttttagtcatt
tttgccacttgttagtggggcgtacggtttttcggaattgcggaaatcgg
cccttttttcttcggaattttggaaatcaggcaaaattcttTCGGTATTT
TCGGAATTCTATAATTgattcggtatcggaaatccatgaatttttgcttc
gaaattttggTATTggaaagtttttatccccttttttcggaattcataca
tgaaaatcaaatttgatgaaaaattagccaaaacgaggaaaaatacccaa
aaaaatcagtatcggaattgcaagtatttttttacggaatttcggaaatt
ttggcaaaattattcggtatttccgAAAtcacaaaccccgtacgcccgtA
GGGTGGAAATTggaaagattttcaatttttcattcggACAGGGTCatcat
tttaccaaaaattcgtatctgacagggtcaactCCAGCGGCACCTCCCCG
TCAGctgtcaaggtcagtgcccccccccaggGTTGTACACAAACTCTTCG
AGCAAATTAATCTTCTCAGAAGTCACGTCGCAtatatctaaaaatacaat
aacCTTCTCATTACAACATTCATAACCCTTAAGCACCCAGTTCACATAAA
ACACTAACCACCATTGTAAAACTCGCATAATTTCCCATCCACTCAACTTT
CAGGCGAAGTATTACAACATTGACGAAGAAGACGAACCGGACGACATTGA
TGACTGGGCTGAGTAGATTCCGGACACTCCCGGACAAATATTTGGCGCCC
GATAGAAAAAGACCCAAAGCCTCTGCCGTTAACTCTTCGCCACGTCTCTT
TTCACAAGCGGACTCACCGTAAAACCATCAACAGACTCTTGACTTGCAAA
AATACTTCACAAAACAGAGAAAAAATGGAAACATTTTCGATCGATATACC
TAGCATAGCACTAACTTTAAAAAATGCTAACTGAATCTAAAAGCAAGAGG
GTGGCTAATAACGCATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006418-exon-sc0000067-1491911889:292754..292802 | TCONS_00006418-exon-sc0000067-1491911889:292754..292802 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1510915933:292754..292802 | TCONS_00006418-exon-sc0000067-1510915933:292754..292802 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1575043694:292754..292802 | TCONS_00006418-exon-sc0000067-1575043694:292754..292802 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1491911889:293076..293216 | TCONS_00006418-exon-sc0000067-1491911889:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1510915933:293076..293216 | TCONS_00006418-exon-sc0000067-1510915933:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1575043694:293076..293216 | TCONS_00006418-exon-sc0000067-1575043694:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1491911889:293846..294582 | TCONS_00006418-exon-sc0000067-1491911889:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1510915933:293846..294582 | TCONS_00006418-exon-sc0000067-1510915933:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1575043694:293846..294582 | TCONS_00006418-exon-sc0000067-1575043694:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1491911889:296907..297222 | TCONS_00006418-exon-sc0000067-1491911889:296907..297222 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1510915933:296907..297222 | TCONS_00006418-exon-sc0000067-1510915933:296907..297222 | Clytia hemisphaerica | exon |
| TCONS_00006418-exon-sc0000067-1575043694:296907..297222 | TCONS_00006418-exon-sc0000067-1575043694:296907..297222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:292754..297222 + |
Blast
BLAST of TCONS_00006418 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.083e-16 Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 541 GKVLMSFTYLPAANKLNLKVIRLAELPSIKRGGADSVRIHLCVLPMRKQRFKTKIQTASQGVFNQTFQFVHMTKDLLETCAIRLRVYGKKGFNTTKLIGEAKINLAKVDLTSPLA 885
G + ++F Y KL + V + ++P+ R G +S ++HL +LP++KQR KT IQ VF +TF+F H+ +++ A+R R+YG K++GE L K++L ++
Sbjct: 262 GTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMS 376
The following BLAST results are available for this feature:
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