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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006416 ID=TCONS_00006416|Name=TCONS_00006416|organism=Clytia hemisphaerica|type=transcript|length=1457bp
CACCGCTGAagctcttgaaaaaaaaaattaacaaatctcATATGAAAGAA
ATTACGGAAAATTATATGGCTTACAAAATGGAGGaagaagaaaaacttta
aaCACTATTTGGGAATAATTGTTATTTATTCACTCtttatttcgtgattt
ttttttgtttttggttgttttcagaAATTGTTGCGTTGAgcggacatttt
tttgtttgcatGCAACAAGCATCAACCAATCAAAGTTAAGATGACACGAA
ATGTCATTATTATTTCCTCTACCTGCGGTGATATTTCTATGTTGTCTTCT
GTTGTTACTCGTCATTCTCGCCATACTCTACTTCGTCGTCTTGAAAAACG
AGAATTTGTGTTCGGGCCTCACAGGACATGGTACAGGAGAAGAAGGAGAG
GAAGGGGAAGCATTATTAGCAACCGAGACAGAAAATCCAGATGGCCCCGT
CGATGGTGGTGGGGATGGAGCTGGAGGGAGCTTAGCTACAGACGTCGAGA
AAGGGCTACCGACAGGGTCGAAGAAGGGCTCCCCAGTAGCCAGTACCTCT
GCGAGAGGTAGCCCTCGTGTAGCAGCAAGTCTAGTAGAAGAAAAACCGCA
ACCTGGTCCTTCCAAAGCGCCAATCGCACTACCACCATCGCCTGTCAAAC
CCAAATCACCTCAGGAGCCAAAACCAGCCACCAACACAACCACTGAAAGT
GGCGGCGGAGATGTTGGGTTTATTTCCACTAATGAAGAAGCGCCTTGTCT
TGCAGGGAAAGTATTGATGTCTTTCACGTATCTGCCTGCCGCTAATAAAC
TGAACTTAAAAGTCATTCGTTTGGCTGAGTTACCGTCCATTAAGCGGGGC
GGCGCCGATAGCGTGCGCATTCATTTGTGTGTTTTACCGATGCGGAAACA
GAGGTTCAAGACGAAGATTCAAACCGCATCACAAGGTGTGTTCAACCAGA
CGTTCCAATTCGTCCACATGACCAAAGATTTATTGGAGACGTGTGCGATC
CGTTTACGTGTATACGGGAAAAAGGGATTCAACACAACAAAACTAATCGG
AGAAGCAAAAATCAATCTAGCGAAAGTGGATTTGACAAGTCCATTGGCCG
ATGGTGATATTTGGAAGAATCTCAGTCCCAAAGGAGAAGTGGCGAAGTAT
TACAACATTGACGAAGAAGACGAACCGGACGACATTGATGACTGGGCTGA
GTAGATTCCGGACACTCCCGGACAAATATTTGGCGCCCGATAGAAAAAGA
CCCAAAGCCTCTGCCGTTAACTCTTCGCCACGTCTCTTTTCACAAGCGGA
CTCACCGTAAAACCATCAACAGACTCTTGACTTGCAAAAATACTTCACAA
AACAGAGAAAAAATGGAAACATTTTCGATCGATATACCTAGCATAGCACT
AACTTTAAAAAATGCTAACTGAATCTAAAAGCAAGAGGGTGGCTAATAAC
GCATTTG Run BLAST on NCBI transcript from alignment at sc0000067:290446..297222+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006416 ID=TCONS_00006416|Name=TCONS_00006416|organism=Clytia hemisphaerica|type=transcript|length=6777bp|location=Sequence derived from alignment at sc0000067:290446..297222+ (Clytia hemisphaerica)
CACCGCTGAagctcttgaaaaaaaaaattaacaaatctcATATGAAAGAA
ATTACGGAAAATTATATGGCTTACAAAATGGAGGaagaagaaaaacttta
aaCACTATTTGGGAATAATTGTTATTTATTCACTCtttatttcgtgattt
ttttttgtttttggttgttttcagaAATTGTTGCGTTGAgcggacatttt
tttgtttgcatGCAACAAGCATCAACCAATCAAAGTTAAGATGACACGAA
ATGTCATTATTATGTAAGTCACAtcgcaaaaaaatttgttgaatttcTCT
GCTTATAACCCTCAAATGCATTCATAGTAAAATGGACATTTCGATACATA
GAACTAAGAATGCGCGTCATAATTTCCCTGCACCGTTCAGTAGTAATCAG
CCGGCGGAAGCATCAGTATATTTCCTAGATCATAAAACATTCCTGCAATC
TCCAATATTACTCTAAATTGAAAACAACGATAGAGctttaaagaataaaa
gaaaattaCCTGTTTCTGAATTGCATTTTGACTGTCGGTGAAACGGAGTC
GATGAACCAAGAAATTCTTCTACGATATCCGAATATTCCGCTACTCGAAG
AAGCCCAAAATTTCTCAACAATCTGTGatacagaaaaatcaaaaaaaact
caGTTATCCTAgtttaaaaatacaaattccTTAATATTTTATTGATAGTT
TTGTAGAATGTTTAACAAACTGATGTCTTCTCTTGAATGGGACGCTATTG
ATCAAGTATCCGACCCCCTTTTGCGACTTGACAAGATCTCGACCCTAAAA
AGAGCACTCGATGCAGAATTCATTACAATTTCTTTATCCTACCCTAGGAT
GACgatgatgaaaataaaaaaggaagAAATCTTAATGAATTTTTAATTTC
GAGTGATCGTGATCCGAGTCATGTTACGTCTAAAAGGAGTACTCCACAAC
GGGTTCACAACATTATAAATTTACTGCTACCCCGATAAAACATGACCACA
ATGGCGAAACAGGGTTATAAGCCTTAGAATTGGTTTCAAATATGCTCTAA
CCCGTTGAAAAGAATACATATATAAATCTGTAGCCaacaatttaatttga
tttgacaatatatttcgaaAACTGTGTTTCATTtatacaatacacctttt
cgaccgtagttgtgcggtcaggcgcgtgccactttatcatttaattatcc
cctaaactcgatccaatccattttttacacctttttctattgtctatagg
tgcgaaaaaatgactgggacggttttagggtgctAAAACGGACAAAATAG
TTCCCGCGTGGCAATTGTGGCGGCTAcgttcgaaaaggtgtattgctcTG
ATTGAACTAGTCTTTACTGCAAGGTTTACAAGCCAAAATAGTTAGACATG
CgcaataaaatgtaaacagtttGTCATCACAGGTTGGATTTAGAAGAAAG
TACAATATTGTAAATAGGTGAAAAGTCGATCAATTATGGCTGATTAGATA
TCAAGATAAAATATTTGTGGCCTTCAATGATTTCCAGCTCAAACACAACC
CACCccctcaaaaagaaaatttgccaGATGGAGGTTTTTAGACATGATGT
GAAAATGCGAAATAATTAGACACAATggtgtttactttgaaaaatgaTAG
ACATTTTGACAAATTACTTGATTTACAAGGAAATGATAAGAATTAGTCAT
AGTAAACAAATTAGTCATGGAAAAAATGCAACAGTTTATCAAATACCACA
TAAATTCtgtttcaaaaattatgtttgcCCGAAATTTGTTTTTTCNTACA
ACAGTTTATCAAATACCGCATAAATtctgtttcaaaaattttgcccgaaa
tttgttttttccagagaataagtcaaaatctaaatcGTTCCAACTACATT
GGAGTAAAAAAGGGTGGGGTCAACGATACAGGGTTGTATATTATTAGCCA
AAATCGCACTTATATCTTTTCCCTAAAATGATGAACTATATTAGACTCAA
CAATATCAAATACTTTGGGTTGGAagattaaagaaaaaatcaaagttgaa
aaaataccaaCCTTTTGAAGACATTATCGGGACCTGCTTGTATTCCACAA
CTTGATTTGAGCGCGaatgaaatgaaaatctcaTATAAAGTAAATGTTTC
GCAAATTCTCATGagtcaaaaactaatttttctaatttcatAATAATTGT
CGTTATTTTGACTTgccaaaaattataatttatcTGGGATAATCATCAAA
TTAGACTAgggtttctgtttttgttttttttgttttgcgtATTAAAGCAT
CAAAATACAGAGAGAAGAGGGCAGTAGGTGTTTGTTCGAGATGAAGAACC
AGCTAAAGTAAGAAAAGGTCTTTCAAATCGTGACTCGCAAAACATCAGCA
AAAACCTACTTTTAGTCTAAATAACCCTGCAAAAATCCAGGAAAAAGAAC
TCAGCAAAGATTGGAAGGGTTTTATTATAGATAAAGCCTCACGAATCTTT
TGATAGACTTTATTCCATACCACATGAAGAATCGGCAAGGAGTAAGAATa
cgattgattgaaaaaaattgacagacGGGAGGTAATATTTTCCAACCATA
TAATGACATTTTCTTTCCTTCTCGTTTCAGTTCCTCTACCTGCGGTGATA
TTTCTATGTTGTCTTCTGTTGTTACTCGTCATTCTCGCCATACTCTACTT
CGTCGTCTTGAAAAACGAGAATTTGTGTTCGGGCCTCACAGGACATGGTA
CAGGAGAAGAAGGAGAGGAAGGTAAGTTTCTCCCTGTGGAGGAgagtttt
tgctttgttttcttCCCTTATAAATAAAAGAGTGTACTCCATCATACTGT
TTTTTTGTATGTAAAAGTTATGAAAGTCGATCATTAAGTCTAGATCTGTG
CAGATTTACAACATAGCCTTAAAGCCAGTCTCAACTCgataaattgacca
aaaaagtCTAGATCTCaactttttgacaaattttaacTCCAAATTCCGAC
GTTAGGACCGGTGTGATAGCAAAGAAAAAGGGTGCCTTCGACCTTCCCAG
CCCGACAGGGCCTTCCGAAGGCCACGTAAAAGTAATGCCTCTTTAGACTG
AATAAAAATTTGCCACACAAACAAATCTTTCGTAAAATCTTTTATCTTAT
TGATTTGATTGTGAATCAAAGCTAAATCGACAACGTGTAAAACAAATTCA
CCAGCGTCAATTGAAAAACGCGGAAAAGAATAAGGGAATAAGGAGAAATA
AGTTTACAGCTTAAGCTTCTGAGCTGTAGTTGAGAATGCATGTCTCTGTG
TAAGAGATGTGTTCGTGCCTTAAATTATTGGCATCAAAACTCGTTCACAA
ACTTCCGAGTCTTGGAAAATTCAGCAAATTTTGTTGCTGCTGTCTTTTAG
GGGAAGCATTATTAGCAACCGAGACAGAAAATCCAGATGGCCCCGTCGAT
GGTGGTGGGGATGGAGCTGGAGGGAGCTTAGCTACAGACGTCGAGAAAGG
GCTACCGACAGGGTCGAAGAAGGGCTCCCCAGTAGCCAGTACCTCTGCGA
GAGGTAGCCCTCGTGTAGCAGCAAGTCTAGTAGAAGAAAAACCGCAACCT
GGTCCTTCCAAAGCGCCAATCGCACTACCACCATCGCCTGTCAAACCCAA
ATCACCTCAGGAGCCAAAACCAGCCACCAACACAACCACTGAAAGTGGCG
GCGGAGATGTTGGGTTTATTTCCACTAATGAAGAAGCGCCTTGTCTTGCA
GGGAAAGTATTGATGTCTTTCACGTATCTGCCTGCCGCTAATAAACTGAA
CTTAAAAGTCATTCGTTTGGCTGAGTTACCGTCCATTAAGCGGGGCGGCG
CCGATAGCGTGCGCATTCATTTGTGTGTTTTACCGATGCGGAAACAGAGG
TTCAAGACGAAGATTCAAACCGCATCACAAGGTGTGTTCAACCAGACGTT
CCAATTCGTCCACATGACCAAAGATTTATTGGAGACGTGTGCGATCCGTT
TACGTGTATACGGGAAAAAGGGATTCAACACAACAAAACTAATCGGAGAA
GCAAAAATCAATCTAGCGAAAGTGGATTTGACAAGTCCATTGGCCGATGG
TGATATTTGGAAGAATCTCAGTCCCAAAGGAGAAGTGGTAAGCCTTCAAC
ATCCTTCTTGTTGTCTTGCACAACCTTTCCAAAGAAAACGCTCCGTTAAA
TATCGCAAAAAGAAACGGCTTTGATGACATGCTCTTTTTCGCACTTGAAA
CGTAGACAGcacattaatttttttattgaaacaaactcttgacaattttg
atttttggtgcaGGGAAAAGGATggtgttgtaaaattttcatttttggaa
agacaatgaaatgaaaatgataaaatagaaatttcctggtaaaaaaaatt
gaaataatcgACGAGTTtcacaatttgagaaaataccatttttacgaaag
aagaaaaaagaggtttttaaaaaagtatttggTTCGATATTTTTCACGAT
TTTATAATGTGAGATTTACATGGAGAGTTTTTCTTGTCAAATTTTGTCga
ataaaaaaaatactgtGAATTCTTAATCATTTTACAAACTTTGAAAACAT
CGTTCTAGAATCCATTCTGTAGCGCCCATGTTTCCCAACCGTAAGAAGCC
GCTCATTGAATCTATTTCTTTTTGCGATATTTGACATACAATACCCAGAC
CTGCATAAGTTATGACGTGGGAAAAAAATCCCCAAACTTTTTTAACATAA
TGAGCATCTCAGGAATTTTACTATACCGGTTTATTCTCAATGCCGTGAAA
AAGAGACAAATTTGACGTGAGGATATTTTGTTAAATCTTGACAAATAAAG
AGTAGTTTAGGTATCGAGGGAGTTCGAACTACTATGTGTGCAGACAAAAA
AGGTCTCAAAATGTAGCCCTTACAATACAGGGATTatttagccaaaaatc
gacccttacgatacatttttggcacaaaatgataaaattttccaaaattc
ttCACTTTCAACACCCTTACAATGCACTTTGTCTCATTTTGAACCTTACA
GTGAACTTTGTGAAGTCTGAACAATGCACTCTTTATCTATAGCGAGGTTA
CATACCTGCTTGTTTAAACTAGAAAACACTTTTCTCATCTCCGATGTGGT
GAAAGTCTTCTAGGAAGGCCCGACTGCTCTTGGGTTTAAAAAGTGTAATT
AAATGGTGCTTTTTTAAAAGGTCTAAGGAAGACTGAAAAATAATGATGGG
GAATTTAACCACTTATAAGGCTTTCAAAGCTTTTTAAACGTAACTTTGTT
TCCTTGCAGCTTTCAAATAAACGGGAGACTATCTTTTTGATAGggtaaaa
tgtttcttttttcatGTCACTCCAAAATGCCTCGTAACTCAATCAATACT
ATGTGATCTACAGTTTCCTGGTAGGTTCTAATCAGCCCTCGCATAGAAAC
ACGACAACGTTAAACCTAAAGATAAAAGACATTTCCACTGACTCATCATT
CTGATCATTCTCAGTAAAATAGTAAAATGCacgataaataaataaataaa
taaataaataaataaagcaGTTCTAAATATCCTTAACaagattttttgat
taaaattaaGATAAATGCTGAATCATTATCATAAAGTTGTACACCCAGGG
GGGGGGCGTAGGCGAAACTGGATacgggacgtgccgctggtcagggtctc
TTTTATAGgttctgaagatatctgacagggtccactttttaTTATTTGGA
CATTTTTGCAgggtaaaaattagaaaactttttagtttttcgtctacttt
tagtcatttttgccacttgttagtggggcgtacggtttttcggaattgcg
gaaatcggcccttttttcttcggaattttggaaatcaggcaaaattcttT
CGGTATTTTCGGAATTCTATAATTgattcggtatcggaaatccatgaatt
tttgcttcgaaattttggTATTggaaagtttttatccccttttttcggaa
ttcatacatgaaaatcaaatttgatgaaaaattagccaaaacgaggaaaa
atacccaaaaaaatcagtatcggaattgcaagtatttttttacggaattt
cggaaattttggcaaaattattcggtatttccgAAAtcacaaaccccgta
cgcccgtAGGGTGGAAATTggaaagattttcaatttttcattcggACAGG
GTCatcattttaccaaaaattcgtatctgacagggtcaactCCAGCGGCA
CCTCCCCGTCAGctgtcaaggtcagtgcccccccccaggGTTGTACACAA
ACTCTTCGAGCAAATTAATCTTCTCAGAAGTCACGTCGCAtatatctaaa
aatacaataacCTTCTCATTACAACATTCATAACCCTTAAGCACCCAGTT
CACATAAAACACTAACCACCATTGTAAAACTCGCATAATTTCCCATCCAC
TCAACTTTCAGGCGAAGTATTACAACATTGACGAAGAAGACGAACCGGAC
GACATTGATGACTGGGCTGAGTAGATTCCGGACACTCCCGGACAAATATT
TGGCGCCCGATAGAAAAAGACCCAAAGCCTCTGCCGTTAACTCTTCGCCA
CGTCTCTTTTCACAAGCGGACTCACCGTAAAACCATCAACAGACTCTTGA
CTTGCAAAAATACTTCACAAAACAGAGAAAAAATGGAAACATTTTCGATC
GATATACCTAGCATAGCACTAACTTTAAAAAATGCTAACTGAATCTAAAA
GCAAGAGGGTGGCTAATAACGCATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00006416-exon-sc0000067-1491911889:290446..290708 | TCONS_00006416-exon-sc0000067-1491911889:290446..290708 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1510915933:290446..290708 | TCONS_00006416-exon-sc0000067-1510915933:290446..290708 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1575043694:290446..290708 | TCONS_00006416-exon-sc0000067-1575043694:290446..290708 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1491911889:293076..293216 | TCONS_00006416-exon-sc0000067-1491911889:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1510915933:293076..293216 | TCONS_00006416-exon-sc0000067-1510915933:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1575043694:293076..293216 | TCONS_00006416-exon-sc0000067-1575043694:293076..293216 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1491911889:293846..294582 | TCONS_00006416-exon-sc0000067-1491911889:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1510915933:293846..294582 | TCONS_00006416-exon-sc0000067-1510915933:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1575043694:293846..294582 | TCONS_00006416-exon-sc0000067-1575043694:293846..294582 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1491911889:296907..297222 | TCONS_00006416-exon-sc0000067-1491911889:296907..297222 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1510915933:296907..297222 | TCONS_00006416-exon-sc0000067-1510915933:296907..297222 | Clytia hemisphaerica | exon |
| TCONS_00006416-exon-sc0000067-1575043694:296907..297222 | TCONS_00006416-exon-sc0000067-1575043694:296907..297222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:290446..297222 + |
Blast
BLAST of TCONS_00006416 vs. Swiss-Prot (Human)
Match: SYT14 (Synaptotagmin-14 OS=Homo sapiens GN=SYT14 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.761e-16 Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 2
Query: 755 GKVLMSFTYLPAANKLNLKVIRLAELPSIKRGGADSVRIHLCVLPMRKQRFKTKIQTASQGVFNQTFQFVHMTKDLLETCAIRLRVYGKKGFNTTKLIGEAKINLAKVDLTSPLA 1099
G + ++F Y KL + V + ++P+ R G +S ++HL +LP++KQR KT IQ VF +TF+F H+ +++ A+R R+YG K++GE L K++L ++
Sbjct: 262 GTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMS 376
The following BLAST results are available for this feature:
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