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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006400 ID=TCONS_00006400|Name=TCONS_00006400|organism=Clytia hemisphaerica|type=transcript|length=1486bp
CTTAACTAATAAACTGACTACATTTTTATAGTTagttcttcttcttcaaa
aaaGACTCAGAAGAGTTCAGTCGTGTGTATCTAAAGTGTGACAGTATAGC
ATTAAGACGTGTATGATACAGTGAATGCTCATTGCTGgactttcaaaatg
aaaaatggattGTTTTTTTCGTTGCTTCTCGGAAGCTGCATCTCGTCCGC
CTTTATGAAGCCGGAGCaaatgcttaaaaaagcttccCCTTTGATGAGTG
CTACAGAGGAAGATGGTGATGACCCGTGGAAGCAAAATTTGTGTCAAAAG
GATGgaaatgaaatcaaattttggGATACAGAGACAGGGTCTGGGTACAA
GGAGTGTAAACTTTGCCCCCTAAAGAATGTATTGACTGTTTTGGCGAAGG
TGAATCCATACTGTTTCATCTGTTGCCATGGCACGAACGGTGCAGATCCA
ACATCTCCACCACAAACCACCAAACGAGACGATCAATCACAAATTGCCGA
GACAGATGATACGAAACAAGTTTATTTGGTTCTTGTGGTTGTTCTGTCCA
TCCTCCTTGCTGCGTCGCTTGTTTTCATTGTTTACTACGTGGTGAGGGTC
CGCAGATCTCCCACTATCTTCAATCCGCAACCAGACACTCGAAGTAGTAC
AGACTTCTTGAATGCCTTCCCTTCTTCCACAAACACTGCTATGGAGCAAG
ATCACCACGGAATGAACGTCGAACCTGACCACCACCAACGAGCTACCAAT
GAACCTGACAGCGGTCACGGCACGCCACACATGACAGACGGTGGTAATAT
TCTTCACTCTAATCATATTGGGCTGGACGATGAGGTGGTTGACTTGAATG
GAGAAACGAGTGGAGTCACCGCAGATTCGGATTCTGAATCCGGGTCAGAA
CTTTAGACCTTAGTTTACTGTGTCACCAATGTTTTTGTTACTATTGTTGT
TAAGCTGTCCATCCTCTGAAAGTCATTTGTACATTTGTACATTTGTTCTG
CTACCGCCTTAAAAGTAGCTGAGTTGTAAACTATAAATTTGCAAAAGTTG
TACATACATTTTTACaccccctgtctcacagcccggtGGATCTTTTTCCC
Gcagtggggataaaaagttgtatcgaaatcccaattgggatagaaattct
attgttgtcgagcttaaaaaatccagtagggatggttttggacagcaaat
atttttattgaatttcgaatggcgatgaaatcaaagtcaatttccgaGTG
GGTCTGAATTTGTACGGTATTTTGTTCACTGGGGACAAAATTCTGGCCAA
ATTTTTCCATGGGGCaagggtcccagcgggtctgtgacacaggggtgtat
ttttatttgatttcaaattttttatatgCACACCATCAGAACGTATATTA
ACATTTTTTTGAGTGTTTATAACTTTCTACTTGTACATAtgcatttttca
gaaaatttaaagattaagaccgaatttcaaaaaaag Run BLAST on NCBI protein sequence of TCONS_00006400-protein >TCONS_00006400-protein ID=TCONS_00006400-protein|Name=TCONS_00006400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MKNGLFFSLLLGSCISSAFMKPEQMLKKASPLMSATEEDGDDPWKQNLCQ
KDGNEIKFWDTETGSGYKECKLCPLKNVLTVLAKVNPYCFICCHGTNGAD
PTSPPQTTKRDDQSQIAETDDTKQVYLVLVVVLSILLAASLVFIVYYVVR
VRRSPTIFNPQPDTRSSTDFLNAFPSSTNTAMEQDHHGMNVEPDHHQRAT
NEPDSGHGTPHMTDGGNILHSNHIGLDDEVVDLNGETSGVTADSDSESGS
EL Run BLAST on NCBI transcript from alignment at sc0000067:219289..221522+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006400 ID=TCONS_00006400|Name=TCONS_00006400|organism=Clytia hemisphaerica|type=transcript|length=2234bp|location=Sequence derived from alignment at sc0000067:219289..221522+ (Clytia hemisphaerica)
CTTAACTAATAAACTGACTACATTTTTATAGTTagttcttcttcttcaaa
aaaGACTCAGAAGAGTTCAGTCGTGTGTATCTAAAGTGTGACAGTATAGC
ATTAAGACGTGTATGATACAGTGAATGCTCATTGCTGgactttcaaaatg
aaaaatggattGTTTTTTTCGTTGCTTCTCGGAAGCTGCATCTCGTCCGC
CTTTATGAAGCCGGAGCaaatgcttaaaaaagcttccCCTTTGATGAGTG
CTACAGAGGAAGATGGTGATGACCCGTGGAAGCAAAATTTGTGTCAAAAG
GATGgaaatgaaatcaaattttggGATACAGAGACAGGGTCTGGGTACAA
GGAGTGTAAACTTTGCCCCCTAAAGAATGTATTGACTGTTTTGGCGAAGG
TGAATCCATACTGTTTCATCTGTTGCCATGGCACGAACGGTGCAGGTAAT
TATaccttctttttataagaacaaactttgataaaaacataaggcttcga
ggaccaaatattaagaataagcttaagaacattttaaggcctcTTGGTTT
CTGAAAGACCaagtttcttaggaaaatgcattaaaaaactcacaaaatgg
taGAATCGAATTTTAAATGTAAGCAATTTTCtcaattacacgctttttta
atataagaataacttttataagaatatcagggtgagatttcggagttaga
acaattcatgatatgcaccactgcaatgtcttctgacattacatcacgga
accaaTCGCTCATTGgctgtaagtgacgtaaaatcagtcataacgtcact
ttgaaccaatcagctattgggtggaatggaagacattgcaatggtgcata
tcatgaataggtaaCGTAATTTTATTGAATGTTATGTTTTCCGGAATCGT
TATATGTGCTTTTTCCACTTTGACTATTCTCGTCATTAGATCCAACATCT
CCACCACAAACCACCAAACGAGACGATCAATCACAAATTGCCGAGACAGA
TGATACGAAACAAGTTTATTTGGTTCTTGTGGTTGTTCTGTCCATCCTCC
TTGCTGCGTCGCTTGTTTTCATTGTTTACTACGTGGTGAGGGTCCGCAGA
TCTCCCACTATCTTCAATCGTAAGTTTGTTATATATTCTACAAAGCTTTT
ACGGTCGAAGAGCTGTAGATGAGGCAGTTGAACCCCTCATCCTTCACATA
TCCCCTCTCGTAGCGTCCATTCTCGTACAAAAATGCTGTCCAATTTCTAA
CCTGATCTGCATATTGTTAGCAAGAGCATCATCTGCGCCTTTACCAACAA
AGTCAACAAAAGAGTAAACTGTTTGGCTATTATGTTGCACTCTATCTTAT
TTCTATACTATTTCCTTTTACAGCGCAACCAGACACTCGAAGTAGTACAG
ACTTCTTGAATGCCTTCCCTTCTTCCACAAACACTGCTATGGAGCAAGAT
CACCACGGAATGAACGTCGAACCTGACCACCACCAACGAGCTACCAATGA
ACCTGACAGCGGTCACGGCACGCCACACATGACAGACGGTGGTAATATTC
TTCACTCTAATCATATTGGGCTGGACGATGAGGTGGTTGACTTGAATGGA
GAAACGAGTGGAGTCACCGCAGATTCGGATTCTGAATCCGGGTCAGAACT
TTAGACCTTAGTTTACTGTGTCACCAATGTTTTTGTTACTATTGTTGTTA
AGCTGTCCATCCTCTGAAAGTCATTTGTACATTTGTACATTTGTTCTGCT
ACCGCCTTAAAAGTAGCTGAGTTGTAAACTATAAATTTGCAAAAGTTGTA
CATACATTTTTACaccccctgtctcacagcccggtGGATCTTTTTCCCGc
agtggggataaaaagttgtatcgaaatcccaattgggatagaaattctat
tgttgtcgagcttaaaaaatccagtagggatggttttggacagcaaatat
ttttattgaatttcgaatggcgatgaaatcaaagtcaatttccgaGTGGG
TCTGAATTTGTACGGTATTTTGTTCACTGGGGACAAAATTCTGGCCAAAT
TTTTCCATGGGGCaagggtcccagcgggtctgtgacacaggggtgtattt
ttatttgatttcaaattttttatatgCACACCATCAGAACGTATATTAAC
ATTTTTTTGAGTGTTTATAACTTTCTACTTGTACATAtgcatttttcaga
aaatttaaagattaagaccgaatttcaaaaaaag Coding sequence (CDS) from alignment at sc0000067:219289..221522+ >TCONS_00006400 ID=TCONS_00006400|Name=TCONS_00006400|organism=Clytia hemisphaerica|type=CDS|length=2277bp|location=Sequence derived from alignment at sc0000067:219289..221522+ (Clytia hemisphaerica)
atgaaaaatggattGTTTTTTTCGTTGCTTCTCGGAAGCTGCATCTCGTC
CGCCTTTATGAAGCCGGAGCaaatgcttaaaaaagcttccCCTTTGATGA
GTGCTACAGAGGAAGATGGTGATGACCCGTGGAAGCAAAATTTGTGTCAA
AAGGATGgaaatgaaatcaaattttggGATACAGAGACAGGGTCTGGGTA
CAAGGAGTGTAAACTTTGCCCCCTAAAGAATGTATTGACTGTTTTGGCGA
AGGTGAATCCATACTGTTTCATCTGTTGCCATGGCACGAACGGTGCAGAT
CCAACATCTCCACCACAAACCACCAAACGAGACGATCAATCACAAATTGC
CGAGACAGATGATACGAAACAAGTTTATTTGGTTCTTGTGGTTGTTCTGT
CCATCCTCCTTGCTGCGTCGCTTGTTTTCATTGTTTACTACGTGGTGAGG
GTCCGCAGATCTCCCACTATCTTCAATCCGCAACCAGACACTCGAAGTAG
TACAGACTTCTTGAATGCCTTCCCTTCTTCCACAAACACTGCTATGGAGC
AAGATCACCACGGAATGAACGTCGAACCTGACCACCACCAACGAGCTACC
AATGAACCTGACAGCGGTCACGGCACGCCACACATGACAGACGGTGGTAA
TATTCTTCACTCTAATCATATTGGGCTGGACGATGAGGTGGTTGACTTGA
ATGGAGAAACGAGTGGAGTCACCGCAGATTCGGATTCTGAATCCGGGTCA
GAACTTTAGatgaaaaatggattGTTTTTTTCGTTGCTTCTCGGAAGCTG
CATCTCGTCCGCCTTTATGAAGCCGGAGCaaatgcttaaaaaagcttccC
CTTTGATGAGTGCTACAGAGGAAGATGGTGATGACCCGTGGAAGCAAAAT
TTGTGTCAAAAGGATGgaaatgaaatcaaattttggGATACAGAGACAGG
GTCTGGGTACAAGGAGTGTAAACTTTGCCCCCTAAAGAATGTATTGACTG
TTTTGGCGAAGGTGAATCCATACTGTTTCATCTGTTGCCATGGCACGAAC
GGTGCAGATCCAACATCTCCACCACAAACCACCAAACGAGACGATCAATC
ACAAATTGCCGAGACAGATGATACGAAACAAGTTTATTTGGTTCTTGTGG
TTGTTCTGTCCATCCTCCTTGCTGCGTCGCTTGTTTTCATTGTTTACTAC
GTGGTGAGGGTCCGCAGATCTCCCACTATCTTCAATCCGCAACCAGACAC
TCGAAGTAGTACAGACTTCTTGAATGCCTTCCCTTCTTCCACAAACACTG
CTATGGAGCAAGATCACCACGGAATGAACGTCGAACCTGACCACCACCAA
CGAGCTACCAATGAACCTGACAGCGGTCACGGCACGCCACACATGACAGA
CGGTGGTAATATTCTTCACTCTAATCATATTGGGCTGGACGATGAGGTGG
TTGACTTGAATGGAGAAACGAGTGGAGTCACCGCAGATTCGGATTCTGAA
TCCGGGTCAGAACTTTAGatgaaaaatggattGTTTTTTTCGTTGCTTCT
CGGAAGCTGCATCTCGTCCGCCTTTATGAAGCCGGAGCaaatgcttaaaa
aagcttccCCTTTGATGAGTGCTACAGAGGAAGATGGTGATGACCCGTGG
AAGCAAAATTTGTGTCAAAAGGATGgaaatgaaatcaaattttggGATAC
AGAGACAGGGTCTGGGTACAAGGAGTGTAAACTTTGCCCCCTAAAGAATG
TATTGACTGTTTTGGCGAAGGTGAATCCATACTGTTTCATCTGTTGCCAT
GGCACGAACGGTGCAGATCCAACATCTCCACCACAAACCACCAAACGAGA
CGATCAATCACAAATTGCCGAGACAGATGATACGAAACAAGTTTATTTGG
TTCTTGTGGTTGTTCTGTCCATCCTCCTTGCTGCGTCGCTTGTTTTCATT
GTTTACTACGTGGTGAGGGTCCGCAGATCTCCCACTATCTTCAATCCGCA
ACCAGACACTCGAAGTAGTACAGACTTCTTGAATGCCTTCCCTTCTTCCA
CAAACACTGCTATGGAGCAAGATCACCACGGAATGAACGTCGAACCTGAC
CACCACCAACGAGCTACCAATGAACCTGACAGCGGTCACGGCACGCCACA
CATGACAGACGGTGGTAATATTCTTCACTCTAATCATATTGGGCTGGACG
ATGAGGTGGTTGACTTGAATGGAGAAACGAGTGGAGTCACCGCAGATTCG
GATTCTGAATCCGGGTCAGAACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006400-exon-sc0000067-1491911889:219289..219733 | TCONS_00006400-exon-sc0000067-1491911889:219289..219733 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1510915933:219289..219733 | TCONS_00006400-exon-sc0000067-1510915933:219289..219733 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1575043694:219289..219733 | TCONS_00006400-exon-sc0000067-1575043694:219289..219733 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1491911889:220228..220407 | TCONS_00006400-exon-sc0000067-1491911889:220228..220407 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1510915933:220228..220407 | TCONS_00006400-exon-sc0000067-1510915933:220228..220407 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1575043694:220228..220407 | TCONS_00006400-exon-sc0000067-1575043694:220228..220407 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1491911889:220662..221522 | TCONS_00006400-exon-sc0000067-1491911889:220662..221522 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1510915933:220662..221522 | TCONS_00006400-exon-sc0000067-1510915933:220662..221522 | Clytia hemisphaerica | exon |
| TCONS_00006400-exon-sc0000067-1575043694:220662..221522 | TCONS_00006400-exon-sc0000067-1575043694:220662..221522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:219289..221522 + |
Blast
The following BLAST results are available for this feature:
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