TCONS_00006399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006399
Unique NameTCONS_00006399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006399 ID=TCONS_00006399|Name=TCONS_00006399|organism=Clytia hemisphaerica|type=transcript|length=1790bp
TCAACCATCAACAGGAACGCCCGGTGCCACCAAAGATGAGCACAAGAAGA
AACTTTCACATCTGAAGAATATCGATCGCAAATTTATTGATATGATTCTC
AACGAAGCTGTTGAAGAGTAAGTCAGAGGGAGGGACTCGGATTGAGTATT
TCACACTATATCATTGGTCAAAATAAGTTCTTTTAGTCAAAGAAAGTTCG
GGCTAGATCTTATTGAGGCCCGAATGATGTCAAATAATTGAAGCAATTGT
TGCATTGAGGGCAGAATTACATCAGGTATGGATATTATTCAAACCTAGTA
TGtattgaacggtgaaaaagaatgcagcTATTataatttgattgattgat
agcAGTAGTAAGTATATTAGTAAGTTCGAACTTTCAGAAGGTAATATAAA
TGTATTGTTGCTACAACTAAAATGTTTACTTTTGCTTATCATTGCAATTT
TCTCCTTCGGTGTTTATTTCAGTGACCGTAAAGTTACATTCGACGATATT
GGTGGTATGGATTTGCCGAAAGAACTTTTAACAGAAATGGTCATTTTACC
ATCAGAAAGACCCGAGCTTTTCCAAGGGCTTCGTTCACCAGCCCGTGGTC
TGCTTCTCTTTGGTCCCCCTGGTAACGGGAAGACATTACTGGCAAAAGCA
CTAGCCTCTGAAGCAAAAGCAGTCTTTTTCAACATCAGTGCTGCTACTCT
CACTTCAAAATGGATTGGCGAGGGAGAGAAAACTGTCCGTGCATTGTTCG
CTGTTGCTCGAGAACTTCAACCGGCCATCATTTTCATCGacGAGATCGAC
TCGTTGTTAACAGCACGTAAAGAGAACGAACACGAAGCTTCCAGGAGAAT
GAAAACTGAATTCTTAACTTCCATGGATGGGATGAGTGCTGAGCAGGGCG
AACGAATTCTGGTGCTGGGCGCGACGAACGTCCCTTGGGAGCTGGATACT
GCTGCTCTCAGgcGACTACCAAAACGAGTGTACGCTCCACTACCTGATCA
TAATACGCGGAAAGATATTCTGAAAAAGACGATGCGAAAACAAAATAACG
TCCTTTCTGAAAAAGACTACGACAAAATTTCAAGTGCTGCAGAAGGTTAT
TCGGGCAGTGATTTGGCTGCTTTAGCGAGCGATGCGGCACAGCAACCAAT
ACGAGAATTAACACGCGAAGAACTGCGCTCCATCCCAGCTGATAAGGTTC
GAGGCGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAACGTTTCAAAA
AGTGTCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAACAAAGAATT
CGGTAGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATGTATGACGTC
ATCCTGAGGTATggaatttatgacgtcattttgaggTATGATATGTGTGG
CGTCATTGTGTGTATGAGGAGGCGTGTTTTGTATTGTAACATTGATACAG
AATTGACGCACAAAATGAGGTCGAGTAAAAACTACCCTGCGCATGTTATA
AGAACTCAACGAAATGAACAATCACAAAACAATGAACAATCACAAAACAA
TGAAATCCATATTTCTAGATATTTTTATGCAAAAACTTAGCgagtcttta
attttttttcaaaacatagcAAGTCTTCATTTCATACGCGAATTATACTT
CTCAAGGCTAGATTATTATTATTCCGATTTTGTTTTGTACTCCTAATCCT
TTTATGAGATTAAGTATCCATTCTGACACTACAGGAAAACAcgctttttt
ggacctaccccggtggaggtcctataaattaacctttgtc
Run BLAST on NCBI

transcript from alignment at sc0000067:167033..175057+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006399 ID=TCONS_00006399|Name=TCONS_00006399|organism=Clytia hemisphaerica|type=transcript|length=8025bp|location=Sequence derived from alignment at sc0000067:167033..175057+ (Clytia hemisphaerica)
TCAACCATCAACAGGAACGCCCGGTGCCACCAAAGATGAGCACAAGAAGA
AACTTTCACATCTGAAGAATATCGATCGCAAATTTATTGATATGATTCTC
AACGAAGCTGTTGAAGAGTAAGTCAGAGGGAGGGACTCGGATTGAGTATT
TCACACTATATCATTGGTCAAAATAAGTTCTTTTAGTCAAAGAAAGTTCG
GGCTAGATCTTATTGAGGCCCGAATGATGTCAAATAATTGAAGCAATTGT
TGCATTGAGGGCAGAATTACATCAGGTATGGATATTATTCAAACCTAGTA
TGtattgaacggtgaaaaagaatgcagcTATTataatttgattgattgat
agcAGTAGTAAGTATATTAGTAAGTTCGAACTTTCAGAAGGTAATATAAA
TGTATTGTTGCTACAACTAAAATGTTTACTTTTGCTTATCATTGCAATTT
TCTCCTTCGGTGTTTATTTCAGTGACCGTAAAGTTACATTCGACGATATT
GGTAtgttatttacaaattttctcaaaaaggaAATAATTCTGCCGCTCTT
TTTAACAAGACCCAACGATTTTTACTTTCTAAGAGAAAAGTAAATCAAGT
GAAATGTTTggcttaaatatttttttgggcttgtatcttaaaaaatttca
gagctTTTATCATTGCCATTCTCTAACAAGACTGGAATTCTTTTCAGGTG
GTATGGATTTGCCGAAAGAACTTTTAACAGAAATGGTCATTTTACCATCA
GAAAGACCCGAGGTGAGcttaaaaaaatttgggttgttTTCTTAAATAGT
CTTTGCTGCGATTGAttcaagaatttctttttagttcTTTTCAATAGTTC
TTTTTACCTGATTTTACTCGTCAAGTATGAGGTCATGGCATGAACCAGAC
AGgagacaaacaaaaaaattgttttttaacgaGTGTCATCGCTTTTCTTC
ATCAGCCATTCTCTGTTTTTCTTTCCAGCTTTTCCAAGGGCTTCGTTCAC
CAGCCCGTGGTCTGCTTCTCTTTGGTCCCCCTGGTAACGGGAAGACATTA
CTGGCAAAAGCACTAGCCTCTGAAGCAAAAGCAGTCTTTTTCAACATCAG
TGCTGCTACTCTCACTTCAAAATGGGTAAGTTATTCGTTCATTTATGAAT
GCCTATAAACCAGCAAAAAAAGGGCTACGCCAATTtactgttttcttttt
taaagctaatttttcattatttttttatacaaggtgtcttgaaaaaatgt
gaaaatttaacgaaatgttttgattttttcctttttttaggaCACCCTGT
ATGACATGCAGATAATATTGATGATACTTTATGATCACTATATTTTAGAT
TGGCGAGGGAGAGAAAACTGTCCGTGCATTGTTCGCTGTTGCTCGAGAAC
TTCAACCGGCCATCATTTTCATCGGTGAGTGCACACTATTGTAActatga
tgaaaaatgaaataacttTTGGTTcgaaaaccaaaaaaataataacttga
aaaaaataaccgTAGATTTCCCAATGTTTGCCGTTAAAGAGTCTTACTGA
CTTATAataatacacacttttttataagaatatttatgatgaaatcgGTC
TTAAAATTAAGGATATGGTAAGAATACCACCATCgtggaatttggcaact
gaacctaagaataccatttttagagcattttcggTGTTTTGGGTCGAAAA
TTTCCAGGTGGGATTTGAAAATGTTCAGGTTTCaggtgggagaaacaagt
taaggtggggattaatttctttaggtgggatttttagtgttttgataaaa
gttaatgttagttttttcttatttccaaattaattataattttttctaaa
ttttatagTCTGTAAATACTTCTTTTACTATACTAAACTTTCctcctttt
tattattatactGTAGGAATTTTTGTTTCGTTCCTCGAAAtagtataatt
tttttgtggGGATAGCATTTTTAGCTGAGATCTGGGAGTCTGGACTGAGG
GTGGGAATTTAAGGGCTAGGTAGGACCTGAATTTTTAGATGGGACCTGAA
ACCCCCTTGCATACTATGGAATATTTCAGCATAATTTTCctcaataagta
atagttatcacacGAGTGGGAtaggctcggaaaatatgacgaaaagtctg
aattcgaaaaatatatccaacattgataactggtttatcgtcaatttgaa
aaatataaaaaaaagtgaccctgaatgggactgaaattccaaaatttcct
caaactttctacttttccccccaaattttccaaaaaaaggcaccctacga
gggactgatctttcattttggtgtttttgcgaccctacctgggacttctg
gaggttaaaaaaggtaccctgaccagcggcgtattcccgtaacccatttt
gccctagtatttatgtacacgtttttagccaatcagattgctcatatttt
tcattttgatgatAAGTTAAGACTATTcataatgaattgaaaaaacacca
ttcttaaaaaaaaagcggcaattatattttgaattttgttttttttacag
acGAGATCGACTCGTTGTTAACAGCACGTAAAGAGAACGAACACGAAGCT
TCCAGGAGAATGAAAACTGAATTCTTAACTTCCATGGATGGGGTAAGTTT
GCTTCCTTCAGATCTTTTAATAAAGAAGCTTTAAAAGTCTTCTCTAGACT
AACAGACAGTGTACCATAGATGGttttaataagaatatattCTTTCTGGT
GTCAAATTGATGACGTAAAACACGAGAAAAAACTCGTAAATTGTTAAAAT
TAGCTCGTAAAATATTTTGTGTAACATTTCGTGTGGTATTACGAACATTT
ATCTAAACGTTTGCTCCATCAAGTAAATTGGGTATAATTTGTACAACTTT
TTTGAGAATGATTGCAACatgcaaaagattttttcaaattttcaaatttg
ccAAGCATTTACCCCGGCAGTTAAAAAACGTAATAAAAATTTCGGTCCTA
AAAGATACAAATTTAGTAGGTAGCTAGTTACctcctttgatttttttcaa
tggNTAAAAGATACAAATTTAGTAGGTAGCTAGTTACCtccttagatttt
ttttcattgataATTTTGTTTAGATGAGTGCTGAGCAGGGCGAACGAATT
CTGGTGCTGGGCGCGACGAACGTCCCTTGGGAGCTGGATACTGCTGCTCT
CAGGTAAGGGGGTCATAAAGATGTTTAAAAACACATAAAGTCTTTGACTC
TTTCTTTTCTGACCCCCAATCTAGAGATGAGATCCTTGATTTACTTAAGA
CAAAAGTCAGATTTTATTTACCATTTCGAATTTAAACCAAGCTGATGACA
GCATCTTGGCTCTCTAAGTACAAGCTGCtcgaaaattttcaatcatattc
TGGTTCTTTTGGATGTCTGTTATAGCTgttaaattttaagattttaatct
GATAAAGTCACTACACACTACAgtatcatttttttgtttcaggcGACTAC
CAAAACGAGTGTACGCTCCACTACCTGATCATAATGTAAGAAGACGTCAT
TTTCCTTTGCTGTTTATCGTCTTATCTTGGATAATTTCTTTTCAACAAAT
AAAACCCAATTTTTTCACTTCTCAATATTTATAGTAATGCATATGTATTT
TTGCGAATATCGCTTGAATTATTCAATACTTACATTCGTTGTTAGCTTCT
CACTTTTTCTTTGCGGATTTCTGTATAAGAAACAATTACCTTTTATCGGT
AGAAATTTTGTCGGTGAAAAGTTTCGTCGGTAAAATATTTCGTCATTAAG
CgattttttcgtcactttttaccGTCTTTCTTTTGCCCATTTCTATGATG
AAAACATTCCTTCATTTTTTAGACGCGGAAAGATATTCTGAAAAAGACGA
TGCGAAAACAAAATAACGTCCTTTCTGAAAAAGACTACGACAAAATTTCA
AGGTATAGTGAACTATGAGTTACTACAGACCCTCCCTTACTCTGTAAAGA
ATATAATGCCGAGAATGACTACTTTTCTTTATTGatcaaaatctaaaatc
tttgattttatcTTCCAGTGCTGCAGAAGGTTATTCGGGCAGTGATTTGG
CTGCTTTAGCGAGCGATGCGGCACAGCAACCAATACGAGGTGATTAAACT
TTATCTATAAATCTCAGTAGTTTTTGTCAAGGTTCTGATTAAATGTGCTA
TCCATTTCAATGTgagaaataataataaaagaaacaagattacttattac
acgaatattactaggcaagtattcaacggccttgaaatcaACACTctaaa
aattaacacgaattttatagctttttcaaggacaccatgaccggttttaa
ttaagggggtttctattaacacgaaatttttcaattcgtgttaataaaat
gactagtaatgtTCGtgtaatacatgttttttttataagcataacgttta
taagcataccgagacctgaatttgtctaaaaaataagcatattacaagca
tattactgagcttgcttttgaggtgtgtaagtgaaaattttaaacgCGGT
AATCGTTCACAACTTTCCTGAAAAATCTTTGTGTCATTAACTATTTCCCT
ATCCTCATGTATAGCAGCaacagattttggaaaaaattgaagactcaaat
ttttcggaaaaataagcatatgataAACATAATTCGAGCCTGAGTCTAAA
ATATCTCTAAGCATACCTGAGCTTGTTTCCCAAaaaacatatgcttataa
aaagaaaaacatgtaaggTAGTTACCGTTTTACCTTAATTTTGCTTCATT
ACTGAGGTTGTTTTGCCTACATCTGAACTACTGTATTATCTACTGATAAA
CGGCTCTAAATATGTCTTTTTGGGGCCACACCGCATATGTCGTTAAATgg
tattttgacgttttttttgtAGAATTAACACGCGAAGAACTGCGCTCCAT
CCCAGCTGATAAGGTACCTTTAGAAGACTTTCTTTTAGTGAATGATATCA
TGACCGTTTTACGATGACAAAATAAATATTAGAAGATATTTGAGGGTGAC
TGGAGAAATGCAACCTTTCTGGAGAAACCTTTCGTCCGGTGTTCTTATTC
TCAATCAAGccttcatttttttgaaaaagtcatctctcaaattttgatat
tataaTCATAGAACATGTTAGATTTCTCCTCCTTTGAAATGGACATATTT
TTAGATCAACTTATATAATTTTGCGAATGTATAATgcgtaaaaaaatttg
atttgtgTGTGActaattttgaacatttttgatcATAAAACTGTATATTT
GTCAGGTTCGAGGCGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAAC
GTTTCAAAGAGTGTCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAA
CAAAGAATTCGGTAGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATG
TATGACGTCATCCTGAGGTATggaatttatgacgtcattttgaggTATGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNttcgttcgttcgttcgttattagctttcctcatgattggctcgt
tagttttttctgattttttgcacaaagatgcataactataaaccctctaa
TGTGACGGAggccgattttcaaaaaaaaaaattttgtgcaaatttgggcc
aaaaaacggctaaaaaacgggttttttggactttgtgaaaaataaggtcg
ttaattttttctgattttttttgcatgaaagtagagtaccatcgtaggta
aaagatggcttaagcagatttttgcaaaaaaattttgttggctcaaaaaa
cgcatgtttatatataagaatcactattataagcatacatcaatgttcat
agtcaaattactcaatttttttatgaaatatatgtttttttttgctcagg
agggcttacttttaaagaatatgtgtgtttcgacatgaaattttggttgc
ttggcgtgtttttataaaaaaactggccaaattcgatatttttttataag
caaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATA
AATATTAGAAGATATTTGAGGGTGACTGGAGAAATGCAACATTTCTGGAG
AAACCTTTCGTCCGGTGTTCTTATTCTCAATCAAGccttcatttttttga
aaaagtcatctctcaaattttgatattataaTCATAGAACATGTTAGATT
TCTCCTCCTTTGAAATGGACATATTTTTAGATCAACTTATATAATTTTGC
GAATGTATAATgcgtaaaaaaatttgatttgtgtgtgactaattttgaaa
atttttgatcatAAAACTGTATATTTGTCAGGTTCGAGGCGTAAAACTAG
AAGACTTTTACAGCTCGTTGAAAAACGTTTCAAAAAGTGTCTCAAGCGAC
CATCTTTCGAAATTCGTCGACTGGAACAAAGAATTCGGTAGCAGTGGTTC
ATGACGTCATCCTGAGGTACAAGATGTATGACGTCATCCTGAGGTATgga
atttatgacgtcattttgaggTATGATATGTGTGGCGTCATTGTGTGTAT
GAGGAGGCGTGTTTTGTATTGTAACATTGATACAGAATTGACGCACAAAA
TGAGGTCGAGTAAAAACTACCCTGCGCATGTTATAAGAACTCAACGAAAT
GAACAATCACAAAACAATGAACAATCACAAAACAATGAAATCCATATTTC
TAGATATTTTTATGCAAAAACTTAGCgagtctttaattttttttcaaaac
atagcAAGTCTTCATTTCATACGCGAATTATACTTCTCAAGGCTAGATTA
TTATTATTCCGATTTTGTTTTGTACTCCTAATCCTTTTATGAGATTAAGT
ATCCATTCTGACACTACAGGAAAACAcgcttttttggacctaccccggtg
gaggtcctataaattaacctttgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003654XLOC_003654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006399-exon-sc0000067-1491911889:167033..167533TCONS_00006399-exon-sc0000067-1491911889:167033..167533Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:167033..167533TCONS_00006399-exon-sc0000067-1510915933:167033..167533Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:167033..167533TCONS_00006399-exon-sc0000067-1575043694:167033..167533Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:167730..167794TCONS_00006399-exon-sc0000067-1491911889:167730..167794Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:167730..167794TCONS_00006399-exon-sc0000067-1510915933:167730..167794Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:167730..167794TCONS_00006399-exon-sc0000067-1575043694:167730..167794Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:168011..168157TCONS_00006399-exon-sc0000067-1491911889:168011..168157Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:168011..168157TCONS_00006399-exon-sc0000067-1510915933:168011..168157Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:168011..168157TCONS_00006399-exon-sc0000067-1575043694:168011..168157Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:168381..168456TCONS_00006399-exon-sc0000067-1491911889:168381..168456Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:168381..168456TCONS_00006399-exon-sc0000067-1510915933:168381..168456Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:168381..168456TCONS_00006399-exon-sc0000067-1575043694:168381..168456Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:169583..169674TCONS_00006399-exon-sc0000067-1491911889:169583..169674Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:169583..169674TCONS_00006399-exon-sc0000067-1510915933:169583..169674Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:169583..169674TCONS_00006399-exon-sc0000067-1575043694:169583..169674Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:170156..170235TCONS_00006399-exon-sc0000067-1491911889:170156..170235Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:170156..170235TCONS_00006399-exon-sc0000067-1510915933:170156..170235Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:170156..170235TCONS_00006399-exon-sc0000067-1575043694:170156..170235Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:170525..170567TCONS_00006399-exon-sc0000067-1491911889:170525..170567Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:170525..170567TCONS_00006399-exon-sc0000067-1510915933:170525..170567Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:170525..170567TCONS_00006399-exon-sc0000067-1575043694:170525..170567Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:170905..170984TCONS_00006399-exon-sc0000067-1491911889:170905..170984Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:170905..170984TCONS_00006399-exon-sc0000067-1510915933:170905..170984Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:170905..170984TCONS_00006399-exon-sc0000067-1575043694:170905..170984Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:171101..171171TCONS_00006399-exon-sc0000067-1491911889:171101..171171Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:171101..171171TCONS_00006399-exon-sc0000067-1510915933:171101..171171Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:171101..171171TCONS_00006399-exon-sc0000067-1575043694:171101..171171Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:171955..171995TCONS_00006399-exon-sc0000067-1491911889:171955..171995Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:171955..171995TCONS_00006399-exon-sc0000067-1510915933:171955..171995Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:171955..171995TCONS_00006399-exon-sc0000067-1575043694:171955..171995Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1491911889:174464..175057TCONS_00006399-exon-sc0000067-1491911889:174464..175057Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1510915933:174464..175057TCONS_00006399-exon-sc0000067-1510915933:174464..175057Clytia hemisphaericaexon
TCONS_00006399-exon-sc0000067-1575043694:174464..175057TCONS_00006399-exon-sc0000067-1575043694:174464..175057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:167033..175057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.847776	0.891711	1.0347	0.443583	0.463499	0.519708	1.73907	2.98335	1.2431	1.01635	2.34146	1.27616	2.52059	1.92553	3.16634	3.46052	1.75179	3.22283	1.07641	2.69372	3.87586	2.87122	1.21404	2.16296	2.25933	1.55422	2.92165	1.89395	2.726	1.27055
Blast
[Close]
BLAST of TCONS_00006399 vs. Swiss-Prot (Human)
Match: SPAST (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.026e-85
Identity = 166/276 (60.14%), Postives = 212/276 (76.81%), Query Frame = 3 
Query:  483 VTFDDIGGMDLPKELLTEMVILPSERPELFQGLRSPARGLLLFGPPGNGXXXXXXXXXXXXXXVFFNISAATLTSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRMKTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDHNTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGXXXXXXXXXXXXXPIRELTREELRSIPADKVRGVKLEDFYXXXXXXXXXXXXDHLSKFVDWNKEFGSS 1310
            V FDDI G DL K+ L E+VILPS RPELF GLR+PARGLLLFGPPGNGKT+LAKA+A+E+ A FFNISAA+LTSK++GEGEK VRALFAVARELQP+IIFIDE+DSLL  R+E EH+ASRR+KTEFL   DG+ +   +R+LV+GATN P ELD A LRR  KRVY  LP+  TR  +LK  + KQ + L++K+  +++   +GYSGSDL ALA DAA  PIREL  E+++++ A ++R ++L DF  SLK + +SVS   L  ++ WNK+FG +
Sbjct:  339 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 614
The following BLAST results are available for this feature:
BLAST of TCONS_00006399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAST1.026e-8560.14Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
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