TCONS_00006394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006394
Unique NameTCONS_00006394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006394 ID=TCONS_00006394|Name=TCONS_00006394|organism=Clytia hemisphaerica|type=transcript|length=2136bp
tttactttcactttcaaaaatCCCATGtctagcaaaatatttttttacca
aaCTGCAAAGCTCTGCAACTTTTTCTTCACAACTTGTCCTCAACTGTACA
CATAGCAGCAGAGATGGCTGAGAGGAAAGAAGACCCAAAAACAAacgaaa
atgtacaaaaagttcGAAAACATGCAAAAATTGGGGCAAAATATATCAAT
GATGCAATGGGAATTGAAGAAAAAGGAGaTGAATGTATTTTACCAGATTT
TAAACAAGCAAAAAGACTGTATGAGCAAGGTGTAGGTGAATTAAGGAATG
CTATTGGAATCAAGCTCGAAGGTCAAGATGAAGAGGTTGGCAGAGGAAGA
AAGcttcaagaaaaaatgaaatccaacaTGTCCAACGCTCAATCCAGGAT
TGCATTTCTAACTGTCAGGATTGAAGAAGGAGAActcgaaattgaaaatg
aaaagaagaaatccAATGACAAAACAAAAGTACAAACTACNaattgaaaa
tgaaaagaagaaatccAATGACAAAACAAAAGTACCAACTAAAACAGCTC
CAAAGGAAACAAAGAAACCAGCTGGCCCAAGCAGGCCGACCAAGCCAATC
ACTAAGAAATCAGTGCCAGGTCTAGGGCCATCATCCAGGAGCCATGTGCC
AGCCAAAAGGATCACTCCAGCGTCAACAACATCGATCAAAATGACACGAG
GTCAACCATCAACAGGAACGCCCGGTGCCACCAAAGATGAGCACAAGAAG
AAACTTTCACATCTGAAGAATATCGATCGCAAATTTATTGATATGATTCT
CAACGAAGCTGTTGAAGATGACCGTAAAGTTACATTCGACGATATTGGTG
GTATGGATTTGCCGAAAGAACTTTTAACAGAAATGGTCATTTTACCATCA
GAAAGACCCGAGCTTTTCCAAGGGCTTCGTTCACCAGCCCGTGGTCTGCT
TCTCTTTGGTCCCCCTGGTAACGGGAAGACATTACTGGCAAAAGCACTAG
CCTCTGAAGCAAAAGCAGTCTTTTTCAACATCAGTGCTGCTACTCTCACT
TCAAAATGGATTGGCGAGGGAGAGAAAACTGTCCGTGCATTGTTCGCTGT
TGCTCGAGAACTTCAACCGGCCATCATTTTCATCGacGAGATCGACTCGT
TGTTAACAGCACGTAAAGAGAACGAACACGAAGCTTCCAGGAGAATGAAA
ACTGAATTCTTAACTTCCATGGATGGGATGAGTGCTGAGCAGGGCGAACG
AATTCTGGTGCTGGGCGCGACGAACGTCCCTTGGGAGCTGGATACTGCTG
CTCTCAGgcGACTACCAAAACGAGTGTACGCTCCACTACCTGATCATAAT
ACGCGGAAAGATATTCTGAAAAAGACGATGCGAAAACAAAATAACGTCCT
TTCTGAAAAAGACTACGACAAAATTTCAAGTGCTGCAGAAGGTTATTCGG
GCAGTGATTTGGCTGCTTTAGCGAGCGATGCGGCACAGCAACCAATACGA
GAATTAACACGCGAAGAACTGCGCTCCATCCCAGCTGATAAGGTTCGAGG
CGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAACGTTTCAAAAAGTG
TCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAACAAAGAATTCGGT
AGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATGTATGACGTCATCC
TGAGGTATggaatttatgacgtcattttgaggTATGATATGTGTGGCGTC
ATTGTGTGTATGAGGAGGCGTGTTTTGTATTGTAACATTGATACAGAATT
GACGCACAAAATGAGGTCGAGTAAAAACTACCCTGCGCATGTTATAAGAA
CTCAACGAAATGAACAATCACAAAACAATGAACAATCACAAAACAATGAA
ATCCATATTTCTAGATATTTTTATGCAAAAACTTAGCgagtctttaattt
tttttcaaaacatagcAAGTCTTCATTTCATACGCGAATTATACTTCTCA
AGGCTAGATTATTATTATTCCGATTTTGTTTTGTACTCCTAATCCTTTTA
TGAGATTAAGTATCCATTCTGACACTACAGGAAAACAcgcttttttggac
ctaccccggtggaggtcctataaattaacctttgtc
Run BLAST on NCBI

transcript from alignment at sc0000067:160442..175057+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006394 ID=TCONS_00006394|Name=TCONS_00006394|organism=Clytia hemisphaerica|type=transcript|length=14616bp|location=Sequence derived from alignment at sc0000067:160442..175057+ (Clytia hemisphaerica)
tttactttcactttcaaaaatCCCATGtctagcaaaatatttttttacca
aaCTGCAAAGCTCTGCAACTTTTTCTTCACAACTTGTCCTCAACTGTACA
CATAGGTATGTATATGATTTTTCCATACTGTCTATCCTCTAGTGCAGTCT
TTTATTGCTATGAATTGCTTATTTTAGGGCTATTTTTGATCatgttcaaa
aatagtgtgacatttactgaactcaaaaatatagtatttcttgaataact
tgaaaaatatttcaaatataacgTTGAAATTTTATATGATGATCGGTATT
TACACAAAGAACATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTGAAAAAATAAACGGTTAGCcaccaaaaatactc
attttattaacataattgtcagccaactttgaaaatgtcacaaaacaggc
ctttatttttgaacacgATCTTTTATAATATAATGCcagttttcagagca
tgtcatTGGTTGCCCCAAGGAAAATTTATAACATAAAACTTCGCTCCTAA
GATCCGTTTCCCACCACAAAAAAGCCAGAAAAACAGGTTAATATAGCcag
ttttcaatgattttgccCCTGCTGAACTGGTCTGAACTGTAACGtgagtt
ggtctaatctcgacatacgtcttccaatctcgacaccggatctgtaaaat
aatcaaaacaaaccttgaatgaaattcttggtatcattcttatcgaacaa
gttcatccatcaaactagaagttcagtaaacattgcaatcctttcaatta
aaaaaacagccaaattatataaagcagttttacacaaaacacgaaacgca
tgcaaacttccttgtaactttctcgtgtccatcattaaaattttacaaca
agtcacatgataaaaataatttgcgcgcttagtcgacctggtttccattt
ccttattatttattgcaagcacacgctctaggcgctagaAGGCTGCGTTA
AACTTCTAGAcgccgcacctagcacacccagtcccttttcaaattcataa
ggaaaccgggttcttttaattattttcggtNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGAgagagagtacaatttagtgattga
ttgataactttggtatgtatttgtttatgtttgattttttatttcgaaga
ccagcctacagctatgtcgagattggaAGAGGTATGTCGAGATTAGGCGA
TCCTACAGTAGATATTATTACCCGTGATATTATTATTACCCACTTAAAGC
GCCCCCCAAACCCCCAGCTCGATTTTTCTCCCTCGCTCCATTCGCTCGTT
GTCCCGCATTTCCATTCTCATAAGTTGGCAACTATGttatattttgactg
aattcTGACATCTAGGTACTATGGTTTGAGATCATAATAGTCTCATTATC
AAACAAGGCACCTTATCTCTAAAAAATGTGTCCCATATTTACCCCGTAGT
CAAATCTTAATTTTAGGGTAATTATAGGACACTAAAGTTTGAGTTTGAag
tgattattttttaaaagaaaactacaaacttgattttctaGTTAAATGGA
ATCATAACTACACTCTAAGTCTTTCAAAACCTGCAATGGTTTGCATCTAA
ATTTACTCCAGTTGGTCTAGATTGCTCTATACAAATATTACTGTTTGAAG
TGTCCCGTTATTACCCCCAAATGGGAAAAACTGGGATAAAAATGGGACAC
TGTCAGGCCGACCCTAAAAATTTTttcgtttccggtccaccgggtgacga
aaaaaaaagtgATGCGGGCGGCcgggaaagatttttttttggtcctttct
aatagaaaaaattaggaagaaaaaaattcatctctCTGGCTGTTAGTGTT
AAAGAAAGTATATTGCCACACATTCTGTcccctttttttctctttcactG
AAAGAAATCTGTTGTTATTAATTACAAAAAGCTGATTGAGTGTTGAATGA
GTTTATTAGTTGTGCTTACTTTGTgatctttttttctaagaatcaaCAAA
CCTTTCATTCTAATAAATTCATTTAATATGCATAAcattatttatttgat
ctttaacgTTCCGAAAGCCTCCTAgacaaacaaatattttcttcactcat
ttaaatatgcataacactatttatttgatctttaatATCCAGAAAGCATG
CTAAACAAACAAACCTTTTTGAAGAGTGCAAGTGTTATAAAGCAACGATG
TAacagcccagctggcacacaacattgtttcaacgtccatctaacattca
taacgtctttttaacgtNGTGCCAGCTGGGAGTTTAAATGAGTAAAGGTT
TTTAAGAAGAAAGTTTCCTCTGTTATCTatttggttcttatgaaaaaaaa
atgcggccgggtgacgatgaaaaatatttcacccggccggtgaaccggaa
acttttttttttttaaggtcGGCCTCAAtaaatttgttgaaagtccttta
aatgatagcacttggatttgaagtcatcaagtggatgcaaaacctcaaat
atcatgaccttttggaaagatatctggatttttcaataactttttataCC
TGTCCATTATTTACCCCGAGGGTGTCCTGTAATTACCCCAAAATGCAGGG
TATCTACGGGACACCTTTGAAATACATTTTAGGAACATCtactaaatttc
aagaaaaagtaataaatctTGTGTAAAGGTCATACTTTTatgaataaaat
atcaaaagattgAATTTAATGTTTACAAGATTCTTGACAATATTCTTGTT
TTTGAATTATGACattgcggttattaattttgttccATCTGACAAATCCA
TGTTtgtgagtgcactttattatttTGAGACCTTCCTTTTGATGACTCTT
ATTCTGGTTTCCATATTTGTTATGTTTTCATTCTTAGCAGCAGAGATGGC
TGAGAGGAAAGAAGACCCAAAAACAAacgaaaatgtacaaaaagttcGAA
AACATGCAAAAATTGGGGCAAAATATATCAATGATGCAATGGGAATTGAA
GAAAAAGGAGGCAAGATTTTTATCAagaattttgctaaattttgaattta
tctaTTAAGATTGTTAATCATTGATATTATAGACTAACTATAGACTTTTA
AGTCCagctttatttttcttatattttgtttttcagaTGAATGTATTTTA
CCAGATTTTAAACAAGCAAAAAGACTGTATGAGCAAGGTGTAGGTGAATT
AAGGAATGCTATTGGAATCAAGCTCGAAGGTCAAGGTAAAAACACGAAAT
GTTGTTATTTGATCTTACTAGTGGGTGGCCAAATTATTATATCTTTTCTA
GGACACAACcattcaaaaaatatatgtatATTTAGTCATTTGAGGTGAGG
CTCTGCTGCTATAAGGCCTggccaaaagttttttttggtcAAAGTCTGAT
GTTACATCAGAtgccatagtgtcctcccccctggattcaggggggaatgg
gttttgaggtcaaaaggacgtataggggggaaagacttttttttgaagcc
aggggGGGGGAAAACGAggggggatggaaaattttcattctaggcatggg
ggggaactcaccaaaatcaattcaaaattgaaaaacatctggttttatga
gatgatatagcataatgcttagttttattaatattatggtTTAAAAATAA
CCATCCTTTCCATACattcttgaattagaactaccttagggaaaacaata
agcgttaagttcatcaaattacagctttttaattttatgcttgagggggg
gggacagaaaattttttggaggcagggtggggaaaaatgaggggggggga
atggaaaattttcattctaggcatgagggggaagagaccctgaaggacac
tatggATGCAAAACTGAAGTCAAAAGAGcaacaaaagatttttgaacTNA
GATTTTAAACAAGCAAAAAGACTGTATGAGCAAGGTGTAGGTGAATTAAG
GAATGCTATTGGAATCAAGCTCGAAGGTCAAGGTAAAAACACGAAATGTT
GTTATTTGATCTTACTAGTGGGTGGCCAAATTATTATATCTTTTCTAGGA
CACAACcattcaaaaaatatatgtatATTTAGTCATTTGAGGTGAGGCTC
TGCTGCTATAAGGCCTggccaaaagttttttttggtcAAAGTCTGATGTT
ACATCAGAtgccatagtgtcctcccccctggattcaggggggaaTGGGTN
TTACATGATGGTCTTCATATACACTTGTTAAATTTGAGATGCTATGTTTG
CTAGATTTTCATGAGGTTTTTTCGGCAAgaaatttatttgaaagtcaatt
caattcaattcccCTCCTTTGGAATATATTCTGTACCATTCATTTTATTG
TCTCTTAGATGAAGAGGTTGGCAGAGGAAGAAAGcttcaagaaaaaatga
aatccaacaTGTCCAACGCTCAATCCAGGATTGCATTTCTAAGTACAAAC
TTAtctagttttatttttttcaaattccccGCTGTTTGTTTTACATTCGA
ACAATTGATATGCTTTAGAGGTTTTTGCATAAACACAATAATAGCGAGTA
TCTACACTTTTGAGGATGGTGgagtgactgaaacgatttggaaaaaccaa
gGATAGTATAAGGGCTGATTCatcgtcgtcctcagtcagtcagcaTATGG
AAAAATCAAAAGCTGATTGACATTGCCACAGAAAAAAACGCATACATTTG
AATGTAGCCCGACATTGGTTGAAGTTTTCAATAAAAGAAGGGTTCATTgg
tctttttctgattttacaCTCGCCTTATCAATTTCAGCTGTCAGGATTGA
AGAAGGAGAActcgaaattgaaaatgaaaagaagaaatccAATGACAAAA
CAAAAGTACAAACTACNaattgaaaatgaaaagaagaaatccAATGACAA
AACAAAAGTACCAACTAAAACAGCTCCAAAGGAAACAAAGAAACCAGCTG
GCCCAAGCAGGCCGACCAAGCCAATCACTAAGAAATCAGTGCCAGGTCTA
GGGCCATCATCCAGGAGCCATGTGCCAGCCAAAAGGATCACTCCAGCGTC
AACAACATCGATCAAAATGGTTTGTGGTCTTAGTTTGATACCTTTACGTA
GTTTCACAATATCTATAGTGTGGAAATCATTAAATATATTCAAGACTTTT
TGTTGAGCTAACATTAAAGTTATTAAGATTGAAGAAAACCCCTAAGGAAA
CTATAGGAATCAGTTTCTGTAATTGTGTTGTATACCCATCCACAGAAAGG
GGCTGATAAACATAAATCATTGAAAGCAAAGGAACAATTCTATTGAAATC
TCAGTTGAAATGTAGTTATTCATTGTGTGCATAACATCATATATATTTCT
TTTAACATACTTACACTATTCTCCAATCCAGGTGGATAAAACATCTGTTT
CTGTAGTATTGATGTGCACATTaatagaaaacatttttcagaTATTCTCA
TATTCACAGTTTTATTAATatctttcaaaagttatttcGATATTACATCA
CCTCAGCCCATCACTTGTTGGCTGTTATCTGAGCACATCAGTTCCCAATG
ATAATGAATGATGAATGTCAATTTCTTTTGTAGACACGAGGTCAACCATC
AACAGGAACGCCCGGTGCCACCAAAGATGAGCACAAGAAGAAACTTTCAC
ATCTGAAGAATATCGATCGCAAATTTATTGATATGATTCTCAACGAAGCT
GTTGAAGAGTAAGTCAGAGGGAGGGACTCGGATTGAGTATTTCACACTAT
ATCATTGGTCAAAATAAGTTCTTTTAGTCAAAGAAAGTTCGGGCTAGATC
TTATTGAGGCCCGAATGATGTCAAATAATTGAAGCAATTGTTGCATTGAG
GGCAGAATTACATCAGGTATGGATATTATTCAAACCTAGTATGtattgaa
cggtgaaaaagaatgcagcTATTataatttgattgattgatagcAGTAGT
AAGTATATTAGTAAGTTCGAACTTTCAGAAGGTAATATAAATGTATTGTT
GCTACAACTAAAATGTTTACTTTTGCTTATCATTGCAATTTTCTCCTTCG
GTGTTTATTTCAGTGACCGTAAAGTTACATTCGACGATATTGGTAtgtta
tttacaaattttctcaaaaaggaAATAATTCTGCCGCTCTTTTTAACAAG
ACCCAACGATTTTTACTTTCTAAGAGAAAAGTAAATCAAGTGAAATGTTT
ggcttaaatatttttttgggcttgtatcttaaaaaatttcagagctTTTA
TCATTGCCATTCTCTAACAAGACTGGAATTCTTTTCAGGTGGTATGGATT
TGCCGAAAGAACTTTTAACAGAAATGGTCATTTTACCATCAGAAAGACCC
GAGGTGAGcttaaaaaaatttgggttgttTTCTTAAATAGTCTTTGCTGC
GATTGAttcaagaatttctttttagttcTTTTCAATAGTTCTTTTTACCT
GATTTTACTCGTCAAGTATGAGGTCATGGCATGAACCAGACAGgagacaa
acaaaaaaattgttttttaacgaGTGTCATCGCTTTTCTTCATCAGCCAT
TCTCTGTTTTTCTTTCCAGCTTTTCCAAGGGCTTCGTTCACCAGCCCGTG
GTCTGCTTCTCTTTGGTCCCCCTGGTAACGGGAAGACATTACTGGCAAAA
GCACTAGCCTCTGAAGCAAAAGCAGTCTTTTTCAACATCAGTGCTGCTAC
TCTCACTTCAAAATGGGTAAGTTATTCGTTCATTTATGAATGCCTATAAA
CCAGCAAAAAAAGGGCTACGCCAATTtactgttttcttttttaaagctaa
tttttcattatttttttatacaaggtgtcttgaaaaaatgtgaaaattta
acgaaatgttttgattttttcctttttttaggaCACCCTGTATGACATGC
AGATAATATTGATGATACTTTATGATCACTATATTTTAGATTGGCGAGGG
AGAGAAAACTGTCCGTGCATTGTTCGCTGTTGCTCGAGAACTTCAACCGG
CCATCATTTTCATCGGTGAGTGCACACTATTGTAActatgatgaaaaatg
aaataacttTTGGTTcgaaaaccaaaaaaataataacttgaaaaaaataa
ccgTAGATTTCCCAATGTTTGCCGTTAAAGAGTCTTACTGACTTATAata
atacacacttttttataagaatatttatgatgaaatcgGTCTTAAAATTA
AGGATATGGTAAGAATACCACCATCgtggaatttggcaactgaacctaag
aataccatttttagagcattttcggTGTTTTGGGTCGAAAATTTCCAGGT
GGGATTTGAAAATGTTCAGGTTTCaggtgggagaaacaagttaaggtggg
gattaatttctttaggtgggatttttagtgttttgataaaagttaatgtt
agttttttcttatttccaaattaattataattttttctaaattttatagT
CTGTAAATACTTCTTTTACTATACTAAACTTTCctcctttttattattat
actGTAGGAATTTTTGTTTCGTTCCTCGAAAtagtataatttttttgtgg
GGATAGCATTTTTAGCTGAGATCTGGGAGTCTGGACTGAGGGTGGGAATT
TAAGGGCTAGGTAGGACCTGAATTTTTAGATGGGACCTGAAACCCCCTTG
CATACTATGGAATATTTCAGCATAATTTTCctcaataagtaatagttatc
acacGAGTGGGAtaggctcggaaaatatgacgaaaagtctgaattcgaaa
aatatatccaacattgataactggtttatcgtcaatttgaaaaatataaa
aaaaagtgaccctgaatgggactgaaattccaaaatttcctcaaactttc
tacttttccccccaaattttccaaaaaaaggcaccctacgagggactgat
ctttcattttggtgtttttgcgaccctacctgggacttctggaggttaaa
aaaggtaccctgaccagcggcgtattcccgtaacccattttgccctagta
tttatgtacacgtttttagccaatcagattgctcatatttttcattttga
tgatAAGTTAAGACTATTcataatgaattgaaaaaacaccattcttaaaa
aaaaagcggcaattatattttgaattttgttttttttacagacGAGATCG
ACTCGTTGTTAACAGCACGTAAAGAGAACGAACACGAAGCTTCCAGGAGA
ATGAAAACTGAATTCTTAACTTCCATGGATGGGGTAAGTTTGCTTCCTTC
AGATCTTTTAATAAAGAAGCTTTAAAAGTCTTCTCTAGACTAACAGACAG
TGTACCATAGATGGttttaataagaatatattCTTTCTGGTGTCAAATTG
ATGACGTAAAACACGAGAAAAAACTCGTAAATTGTTAAAATTAGCTCGTA
AAATATTTTGTGTAACATTTCGTGTGGTATTACGAACATTTATCTAAACG
TTTGCTCCATCAAGTAAATTGGGTATAATTTGTACAACTTTTTTGAGAAT
GATTGCAACatgcaaaagattttttcaaattttcaaatttgccAAGCATT
TACCCCGGCAGTTAAAAAACGTAATAAAAATTTCGGTCCTAAAAGATACA
AATTTAGTAGGTAGCTAGTTACctcctttgatttttttcaatggNTAAAA
GATACAAATTTAGTAGGTAGCTAGTTACCtccttagattttttttcattg
ataATTTTGTTTAGATGAGTGCTGAGCAGGGCGAACGAATTCTGGTGCTG
GGCGCGACGAACGTCCCTTGGGAGCTGGATACTGCTGCTCTCAGGTAAGG
GGGTCATAAAGATGTTTAAAAACACATAAAGTCTTTGACTCTTTCTTTTC
TGACCCCCAATCTAGAGATGAGATCCTTGATTTACTTAAGACAAAAGTCA
GATTTTATTTACCATTTCGAATTTAAACCAAGCTGATGACAGCATCTTGG
CTCTCTAAGTACAAGCTGCtcgaaaattttcaatcatattcTGGTTCTTT
TGGATGTCTGTTATAGCTgttaaattttaagattttaatctGATAAAGTC
ACTACACACTACAgtatcatttttttgtttcaggcGACTACCAAAACGAG
TGTACGCTCCACTACCTGATCATAATGTAAGAAGACGTCATTTTCCTTTG
CTGTTTATCGTCTTATCTTGGATAATTTCTTTTCAACAAATAAAACCCAA
TTTTTTCACTTCTCAATATTTATAGTAATGCATATGTATTTTTGCGAATA
TCGCTTGAATTATTCAATACTTACATTCGTTGTTAGCTTCTCACTTTTTC
TTTGCGGATTTCTGTATAAGAAACAATTACCTTTTATCGGTAGAAATTTT
GTCGGTGAAAAGTTTCGTCGGTAAAATATTTCGTCATTAAGCgatttttt
cgtcactttttaccGTCTTTCTTTTGCCCATTTCTATGATGAAAACATTC
CTTCATTTTTTAGACGCGGAAAGATATTCTGAAAAAGACGATGCGAAAAC
AAAATAACGTCCTTTCTGAAAAAGACTACGACAAAATTTCAAGGTATAGT
GAACTATGAGTTACTACAGACCCTCCCTTACTCTGTAAAGAATATAATGC
CGAGAATGACTACTTTTCTTTATTGatcaaaatctaaaatctttgatttt
atcTTCCAGTGCTGCAGAAGGTTATTCGGGCAGTGATTTGGCTGCTTTAG
CGAGCGATGCGGCACAGCAACCAATACGAGGTGATTAAACTTTATCTATA
AATCTCAGTAGTTTTTGTCAAGGTTCTGATTAAATGTGCTATCCATTTCA
ATGTgagaaataataataaaagaaacaagattacttattacacgaatatt
actaggcaagtattcaacggccttgaaatcaACACTctaaaaattaacac
gaattttatagctttttcaaggacaccatgaccggttttaattaaggggg
tttctattaacacgaaatttttcaattcgtgttaataaaatgactagtaa
tgtTCGtgtaatacatgttttttttataagcataacgtttataagcatac
cgagacctgaatttgtctaaaaaataagcatattacaagcatattactga
gcttgcttttgaggtgtgtaagtgaaaattttaaacgCGGTAATCGTTCA
CAACTTTCCTGAAAAATCTTTGTGTCATTAACTATTTCCCTATCCTCATG
TATAGCAGCaacagattttggaaaaaattgaagactcaaatttttcggaa
aaataagcatatgataAACATAATTCGAGCCTGAGTCTAAAATATCTCTA
AGCATACCTGAGCTTGTTTCCCAAaaaacatatgcttataaaaagaaaaa
catgtaaggTAGTTACCGTTTTACCTTAATTTTGCTTCATTACTGAGGTT
GTTTTGCCTACATCTGAACTACTGTATTATCTACTGATAAACGGCTCTAA
ATATGTCTTTTTGGGGCCACACCGCATATGTCGTTAAATggtattttgac
gttttttttgtAGAATTAACACGCGAAGAACTGCGCTCCATCCCAGCTGA
TAAGGTACCTTTAGAAGACTTTCTTTTAGTGAATGATATCATGACCGTTT
TACGATGACAAAATAAATATTAGAAGATATTTGAGGGTGACTGGAGAAAT
GCAACCTTTCTGGAGAAACCTTTCGTCCGGTGTTCTTATTCTCAATCAAG
ccttcatttttttgaaaaagtcatctctcaaattttgatattataaTCAT
AGAACATGTTAGATTTCTCCTCCTTTGAAATGGACATATTTTTAGATCAA
CTTATATAATTTTGCGAATGTATAATgcgtaaaaaaatttgatttgtgTG
TGActaattttgaacatttttgatcATAAAACTGTATATTTGTCAGGTTC
GAGGCGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAACGTTTCAAAG
AGTGTCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAACAAAGAATT
CGGTAGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATGTATGACGTC
ATCCTGAGGTATggaatttatgacgtcattttgaggTATGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttc
gttcgttcgttcgttattagctttcctcatgattggctcgttagtttttt
ctgattttttgcacaaagatgcataactataaaccctctaaTGTGACGGA
ggccgattttcaaaaaaaaaaattttgtgcaaatttgggccaaaaaacgg
ctaaaaaacgggttttttggactttgtgaaaaataaggtcgttaattttt
tctgattttttttgcatgaaagtagagtaccatcgtaggtaaaagatggc
ttaagcagatttttgcaaaaaaattttgttggctcaaaaaacgcatgttt
atatataagaatcactattataagcatacatcaatgttcatagtcaaatt
actcaatttttttatgaaatatatgtttttttttgctcaggagggcttac
ttttaaagaatatgtgtgtttcgacatgaaattttggttgcttggcgtgt
ttttataaaaaaactggccaaattcgatatttttttataagcaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAATATTAGA
AGATATTTGAGGGTGACTGGAGAAATGCAACATTTCTGGAGAAACCTTTC
GTCCGGTGTTCTTATTCTCAATCAAGccttcatttttttgaaaaagtcat
ctctcaaattttgatattataaTCATAGAACATGTTAGATTTCTCCTCCT
TTGAAATGGACATATTTTTAGATCAACTTATATAATTTTGCGAATGTATA
ATgcgtaaaaaaatttgatttgtgtgtgactaattttgaaaatttttgat
catAAAACTGTATATTTGTCAGGTTCGAGGCGTAAAACTAGAAGACTTTT
ACAGCTCGTTGAAAAACGTTTCAAAAAGTGTCTCAAGCGACCATCTTTCG
AAATTCGTCGACTGGAACAAAGAATTCGGTAGCAGTGGTTCATGACGTCA
TCCTGAGGTACAAGATGTATGACGTCATCCTGAGGTATggaatttatgac
gtcattttgaggTATGATATGTGTGGCGTCATTGTGTGTATGAGGAGGCG
TGTTTTGTATTGTAACATTGATACAGAATTGACGCACAAAATGAGGTCGA
GTAAAAACTACCCTGCGCATGTTATAAGAACTCAACGAAATGAACAATCA
CAAAACAATGAACAATCACAAAACAATGAAATCCATATTTCTAGATATTT
TTATGCAAAAACTTAGCgagtctttaattttttttcaaaacatagcAAGT
CTTCATTTCATACGCGAATTATACTTCTCAAGGCTAGATTATTATTATTC
CGATTTTGTTTTGTACTCCTAATCCTTTTATGAGATTAAGTATCCATTCT
GACACTACAGGAAAACAcgcttttttggacctaccccggtggaggtccta
taaattaacctttgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003654XLOC_003654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006394-exon-sc0000067-1491911889:160442..160546TCONS_00006394-exon-sc0000067-1491911889:160442..160546Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:160442..160546TCONS_00006394-exon-sc0000067-1510915933:160442..160546Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:160442..160546TCONS_00006394-exon-sc0000067-1575043694:160442..160546Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:164329..164451TCONS_00006394-exon-sc0000067-1491911889:164329..164451Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:164329..164451TCONS_00006394-exon-sc0000067-1510915933:164329..164451Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:164329..164451TCONS_00006394-exon-sc0000067-1575043694:164329..164451Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:164578..164676TCONS_00006394-exon-sc0000067-1491911889:164578..164676Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:164578..164676TCONS_00006394-exon-sc0000067-1510915933:164578..164676Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:164578..164676TCONS_00006394-exon-sc0000067-1575043694:164578..164676Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:165800..165883TCONS_00006394-exon-sc0000067-1491911889:165800..165883Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:165800..165883TCONS_00006394-exon-sc0000067-1510915933:165800..165883Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:165800..165883TCONS_00006394-exon-sc0000067-1575043694:165800..165883Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:166229..166510TCONS_00006394-exon-sc0000067-1491911889:166229..166510Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:166229..166510TCONS_00006394-exon-sc0000067-1510915933:166229..166510Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:166229..166510TCONS_00006394-exon-sc0000067-1575043694:166229..166510Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:167025..167149TCONS_00006394-exon-sc0000067-1491911889:167025..167149Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:167025..167149TCONS_00006394-exon-sc0000067-1510915933:167025..167149Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:167025..167149TCONS_00006394-exon-sc0000067-1575043694:167025..167149Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:167505..167533TCONS_00006394-exon-sc0000067-1491911889:167505..167533Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:167505..167533TCONS_00006394-exon-sc0000067-1510915933:167505..167533Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:167505..167533TCONS_00006394-exon-sc0000067-1575043694:167505..167533Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:167730..167794TCONS_00006394-exon-sc0000067-1491911889:167730..167794Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:167730..167794TCONS_00006394-exon-sc0000067-1510915933:167730..167794Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:167730..167794TCONS_00006394-exon-sc0000067-1575043694:167730..167794Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:168011..168157TCONS_00006394-exon-sc0000067-1491911889:168011..168157Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:168011..168157TCONS_00006394-exon-sc0000067-1510915933:168011..168157Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:168011..168157TCONS_00006394-exon-sc0000067-1575043694:168011..168157Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:168381..168456TCONS_00006394-exon-sc0000067-1491911889:168381..168456Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:168381..168456TCONS_00006394-exon-sc0000067-1510915933:168381..168456Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:168381..168456TCONS_00006394-exon-sc0000067-1575043694:168381..168456Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:169583..169674TCONS_00006394-exon-sc0000067-1491911889:169583..169674Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:169583..169674TCONS_00006394-exon-sc0000067-1510915933:169583..169674Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:169583..169674TCONS_00006394-exon-sc0000067-1575043694:169583..169674Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:170156..170235TCONS_00006394-exon-sc0000067-1491911889:170156..170235Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:170156..170235TCONS_00006394-exon-sc0000067-1510915933:170156..170235Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:170156..170235TCONS_00006394-exon-sc0000067-1575043694:170156..170235Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:170525..170567TCONS_00006394-exon-sc0000067-1491911889:170525..170567Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:170525..170567TCONS_00006394-exon-sc0000067-1510915933:170525..170567Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:170525..170567TCONS_00006394-exon-sc0000067-1575043694:170525..170567Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:170905..170984TCONS_00006394-exon-sc0000067-1491911889:170905..170984Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:170905..170984TCONS_00006394-exon-sc0000067-1510915933:170905..170984Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:170905..170984TCONS_00006394-exon-sc0000067-1575043694:170905..170984Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:171101..171171TCONS_00006394-exon-sc0000067-1491911889:171101..171171Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:171101..171171TCONS_00006394-exon-sc0000067-1510915933:171101..171171Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:171101..171171TCONS_00006394-exon-sc0000067-1575043694:171101..171171Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:171955..171995TCONS_00006394-exon-sc0000067-1491911889:171955..171995Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:171955..171995TCONS_00006394-exon-sc0000067-1510915933:171955..171995Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:171955..171995TCONS_00006394-exon-sc0000067-1575043694:171955..171995Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1491911889:174464..175057TCONS_00006394-exon-sc0000067-1491911889:174464..175057Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1510915933:174464..175057TCONS_00006394-exon-sc0000067-1510915933:174464..175057Clytia hemisphaericaexon
TCONS_00006394-exon-sc0000067-1575043694:174464..175057TCONS_00006394-exon-sc0000067-1575043694:174464..175057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:160442..175057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12441	4.93374	8.97459	12.6363	1.87305	2.27688	0.000519022	2.56224	2.32344	0.476878	1.59414e-05	4.51777	1.37233	0.0292094	0.0125051	0.00364193	0.00275137	7.47585	0.00114668	0.774572	4.55849	3.05728	0.238085	1.03795	2.64624	0.358373	0.471763	0.00149269	1.24792	6.23007
Blast
[Close]
BLAST of TCONS_00006394 vs. Swiss-Prot (Human)
Match: SPAST (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.030e-94
Identity = 187/346 (54.05%), Postives = 246/346 (71.10%), Query Frame = 1 
Query:  619 GLGPSSRSHVPAKRITPASTTSIKMTRGQPSTGTPGATKDEHKKKLSHLKNIDRKFIDMILNEAVEDDRKVTFDDIGGMDLPKELLTEMVILPSERPELFQGLRSPARGLLLFGPPGNGXXXXXXXXXXXXXXVFFNISAATLTSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRMKTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDHNTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGXXXXXXXXXXXXXPIRELTREELRSIPADKVRGVKLEDFYXXXXXXXXXXXXDHLSKFVDWNKEFGSS 1656
            G GP+  +H    + TP +  + K     PST T   T    KK L + +N+D    ++I+NE V++   V FDDI G DL K+ L E+VILPS RPELF GLR+PARGLLLFGPPGNGKT+LAKA+A+E+ A FFNISAA+LTSK++GEGEK VRALFAVARELQP+IIFIDE+DSLL  R+E EH+ASRR+KTEFL   DG+ +   +R+LV+GATN P ELD A LRR  KRVY  LP+  TR  +LK  + KQ + L++K+  +++   +GYSGSDL ALA DAA  PIREL  E+++++ A ++R ++L DF  SLK + +SVS   L  ++ WNK+FG +
Sbjct:  281 GSGPAPTTH----KGTPKTNRTNK-----PSTPT---TATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 614
The following BLAST results are available for this feature:
BLAST of TCONS_00006394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAST3.030e-9454.05Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
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